lineage | Count |
---|---|
140 | |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage3 | 8 |
lineage4 | 49 |
lineage4.6.1.1 | 2 |
lineage2.2.1 | 27 |
lineage4.4.1.1 | 2 |
lineage4.9 | 45 |
lineage4.3.3 | 5 |
lineage2.2.1.1 | 5 |
lineage1.2.1.2 | 1 |
lineage3.1 | 2 |
lineage2 | 3 |
lineage1.1.1 | 1 |
lineage4.1.1.3 | 5 |
lineage4.3.4.1 | 1 |
lineage4.5 | 2 |
lineage2.1 | 4 |
lineage2.2 | 4 |
lineage4.4.2 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.8 | 13 |
lineage4;lineage2.2 | 1 |
lineage2.2.1;La3 | 1 |
La1.2 | 2 |
lineage4.9;La3 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.1.1.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.1 | 2 |
lineage4.1.2.1 | 16 |
lineage4.3.4.2.1 | 5 |
lineage1.1.2 | 3 |
La1.8.1 | 6 |
lineage4.2.2.2 | 1 |
lineage4.1.2 | 2 |
lineage4.7 | 2 |
lineage4.1.2.1.1 | 1 |
lineage5.2 | 2 |
lineage4.2.1 | 1 |
La2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.4.1.2 | 1 |
lineage3;La3 | 1 |
La1 | 1 |
lineage4.6.2.2 | 3 |
lineage6.1.1 | 2 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
lineage3.1.2 | 2 |
lineage1.2.2.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.9.1 | 1 |
lineage4.3.4 | 1 |
lineage4.1 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
spoligotype | Count |
---|---|
None | 394 |
ID | Drug resistance | Lineage | Country iso2 | SRR1169194 | Other | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR990545 | Other | lineage3 | None | SRR10809074 | Sensitive | lineage4 | None | ERR987722 | HR-TB | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9896144 | Other | lineage3 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173400 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173384 | Other | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1175049 | RR-TB | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1175513 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR12416824 | HR-TB | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13837613 | Sensitive | lineage4.9 | None | SRR13837614 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR15368973 | Other | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR20969652 | Sensitive | lineage4.4.2 | None | SRR25827682 | Other | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR11081258 | Other | lineage4.8 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR11081257 | Other | lineage4.8 | None | SRR8692879 | HR-TB | lineage4.9 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692854 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR8692771 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692824 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692818 | Other | lineage4.9 | None | SRR8692855 | Other | lineage4.9 | None | SRR8692828 | Other | lineage4.9 | None | SRR8692776 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692878 | Other | lineage4.9 | None | SRR8692867 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692899 | Other | lineage4.9 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR23961549 | Other | La1.2 | None | SRR22249687 | Sensitive | lineage4.8 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26159043 | Other | lineage4.9 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR176779 | HR-TB | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR176778 | HR-TB | None | ERR4815604 | HR-TB | None | ERR2179785 | Sensitive | lineage4.5 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR176651 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR176740 | HR-TB | None | ERR181887 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR4816999 | Other | None | ERR2229542 | Other | lineage4.8 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675572 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4816760 | Sensitive | lineage4.1.2.1 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR245716 | Sensitive | lineage2.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4819051 | Other | lineage4 | None | ERR4818929 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341453 | Sensitive | None | SRR5007188 | Other | lineage4 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2514692 | Other | None | SRR5341313 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341315 | Sensitive | None | ERR4819932 | Other | lineage4.7 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR5341461 | Sensitive | lineage4 | None | ERR2446570 | Sensitive | lineage4.8 | nl | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517514 | Sensitive | lineage4.8 | None | SRR5341469 | Other | lineage4 | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR2693254 | Other | None | ERR2693230 | Other | None | ERR2693257 | Other | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045526 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046397 | Other | None | SRR6046385 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046644 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046540 | HR-TB | None | ERR4972483 | Pre-XDR-TB | lineage4.1.2.1.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR7496517 | Other | None | SRR6789626 | Other | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | ERR323039 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323053 | HR-TB | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR323085 | Sensitive | lineage4 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR1063862 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1034634 | HR-TB | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR1063896 | Sensitive | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283025 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283027 | HR-TB | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3445503 | HR-TB | None | ERR3797014 | Other | None | ERR3470647 | Other | lineage3 | None | ERR3797024 | Other | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797017 | Other | None | ERR3797044 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797061 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797068 | Other | La1.8.1 | None | ERR3797069 | Other | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4024991 | Other | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4407452 | Sensitive | lineage3 | None | ERR4407463 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797037 | Pre-XDR-TB | lineage3.1.2 | None | ERR4796577 | MDR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4798504 | Other | lineage3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798099 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799378 | Sensitive | lineage4 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR6866639 | Other | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6866022 | Other | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR702406 | HR-TB | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR736865 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736848 | HR-TB | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR7821185 | Sensitive | lineage4.1.1.3 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786440 | Other | lineage4.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786619 | Sensitive | lineage4.8 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787165 | Other | lineage6 | None | ERR9786671 | Other | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None |
---|