Run ID: ERR9786619
Sample name:
Date: 02-04-2023 12:38:54
Number of reads: 5787540
Percentage reads mapped: 91.32
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.97 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7017 | p.Ala593Val | missense_variant | 0.91 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.14 |
gyrA | 7661 | c.360C>T | synonymous_variant | 0.13 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.14 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.15 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.15 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.15 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.15 |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.15 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.15 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.15 |
rpoC | 764576 | p.Ser403Thr | missense_variant | 0.13 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.16 |
rpoC | 764618 | c.1249C>T | synonymous_variant | 0.16 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.15 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.14 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.14 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.14 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.14 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.16 |
rpoC | 765928 | c.2559C>G | synonymous_variant | 0.17 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.16 |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.15 |
rpoC | 765982 | c.2613C>T | synonymous_variant | 0.15 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.13 |
rpoC | 766085 | p.Pro906Ala | missense_variant | 0.98 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1460992 | c.-53A>C | upstream_gene_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473944 | n.287G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473966 | n.309T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473971 | n.314G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474036 | n.379G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474040 | n.383G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474054 | n.397T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475013 | n.1356G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475201 | n.1544G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475267 | n.1610G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476299 | n.2642C>T | non_coding_transcript_exon_variant | 0.13 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.15 |
rpsA | 1834531 | c.990C>T | synonymous_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 0.56 |
whiB7 | 3568503 | c.177G>T | synonymous_variant | 0.98 |
alr | 3840764 | c.657G>C | synonymous_variant | 0.99 |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.14 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.15 |
rpoA | 3878276 | c.232C>T | synonymous_variant | 0.16 |
rpoA | 3878284 | p.Glu75Ala | missense_variant | 0.17 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.15 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.15 |
rpoA | 3878304 | c.204G>T | synonymous_variant | 0.15 |
rpoA | 3878307 | c.201C>G | synonymous_variant | 0.15 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.15 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.16 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.15 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.14 |
clpC1 | 4038917 | c.1788C>T | synonymous_variant | 0.13 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.14 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.14 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.14 |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.15 |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 0.15 |
clpC1 | 4039574 | p.Ala377Gly | missense_variant | 0.15 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.15 |
clpC1 | 4039592 | c.1113G>T | synonymous_variant | 0.16 |
clpC1 | 4039610 | c.1095G>T | synonymous_variant | 0.17 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.16 |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249511 | p.Met1000Leu | missense_variant | 0.97 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |