EBG00000313339 - n.242A>C
Drug resistance types
20 Sensitive
14 RR-TB
67 HR-TB
45 MDR-TB
5 Pre-XDR-TB
2 XDR-TB
75 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage5.2 | 2 |
| 9 | |
| lineage4.1.2.1 | 18 |
| lineage2.2.1 | 16 |
| lineage4.9 | 27 |
| La1.7.1 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.4.1.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 16 |
| lineage4.8 | 5 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.1.3 | 7 |
| La3;M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 9 |
| lineage4.1.2 | 2 |
| lineage4.6.4 | 2 |
| lineage4.9.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 9 |
| lineage2.2.2 | 2 |
| lineage4 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.6.2.2 | 4 |
| lineage1.2.2.2 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage4.1.2.1.1 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage4.3.3 | 3 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage1.1.1 | 1 |
| M.canetti;lineage2.2 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.8.1 | 1 |
| lineage4.5 | 1 |
| lineage4.8.1 | 1 |
| lineage2.1 | 1 |
| lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.1;lineage4.8 | 2 |
| lineage2.2 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| La1.2.BCG | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 228 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786843 | Other | None | ERR212001 | HR-TB | None | ERR234659 | Other | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1162864 | Other | lineage4.1.2.1 | None | SRR1181136 | Sensitive | lineage2.2.1 | None | SRR13861304 | Other | lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | ERR2446118 | Other | lineage4.1.2.1 | nl | SRR1640750 | Other | None | SRR3675572 | Other | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR3275196 | Other | lineage2.2.1 | nl | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR6981912 | Sensitive | lineage4.3.2.1 | None | SRR6982138 | Sensitive | lineage4.1.1.3 | None | ERR3468607 | Other | lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR2517514 | Sensitive | lineage4.8 | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SAMN02585942 | Sensitive | lineage4.1.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR4821053 | RR-TB | lineage3 | None | SRR7496517 | Other | None | ERR9896144 | Other | lineage3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675448 | Other | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR2027263 | Other | lineage4 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR9786619 | Sensitive | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR2446144 | Other | lineage3 | nl | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | ERR3275215 | RR-TB | lineage4.1.2.1 | nl | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1181319 | Sensitive | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SAMN02350446 | Sensitive | lineage2.2.1 | None | SRR6044815 | Other | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9787061 | Sensitive | lineage6.2.3 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6785267 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | ERR8665994 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR3797083 | RR-TB | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323036 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2693228 | RR-TB | lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR13861381 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR1791696 | Other | La1.8.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR990545 | Other | lineage3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2446570 | Sensitive | lineage4.8 | nl | SRR13423544 | Other | lineage4.5 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR13861332 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR2517528 | RR-TB | lineage3 | nl | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR6044925 | Sensitive | lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675507 | Other | lineage4.9 | None | ERR3275220 | Other | lineage3 | nl | SRR1183049 | RR-TB | lineage2.2 | None | SRR1181085 | Sensitive | lineage4.1.2 | None | SRR3675482 | Other | lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR13861176 | Other | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1166821 | Other | lineage4.1.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR5341430 | Other | lineage3 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786391 | Other | lineage4.1.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR760877 | MDR-TB | lineage4.1.2.1.1 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR3675549 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR7496509 | Other | None | ERR6198317 | Other | La1.2 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1011488 | Sensitive | lineage2.2.1 | None | SRR1510066 | RR-TB | lineage1.2.1.2.1 | None | SRR3675311 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None |
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