TB-Profiler result

Run: SRR6785267
Summary

Run ID: SRR6785267

Sample name:

Date: 04-04-2023 15:41:12

Number of reads: 2294590

Percentage reads mapped: 82.17

Strain: lineage2.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.99
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.98
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781687 p.Lys43Arg missense_variant 0.83 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6136 c.897G>A synonymous_variant 0.15
gyrB 6139 c.900G>C synonymous_variant 0.15
gyrB 6238 c.999G>A synonymous_variant 0.19
gyrB 6242 p.Arg335Lys missense_variant 0.19
gyrB 6250 c.1011A>G synonymous_variant 0.18
gyrB 6256 c.1017G>A synonymous_variant 0.17
gyrB 6268 c.1029C>G synonymous_variant 0.14
gyrB 6280 c.1041T>C synonymous_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7427 c.126G>C synonymous_variant 0.15
gyrA 7442 c.141G>C synonymous_variant 0.19
gyrA 7451 c.150C>G synonymous_variant 0.18
gyrA 7457 c.156T>C synonymous_variant 0.19
gyrA 7475 c.174A>G synonymous_variant 0.16
gyrA 7480 p.Phe60Tyr missense_variant 0.16
gyrA 7484 c.183T>C synonymous_variant 0.16
gyrA 7523 c.222C>A synonymous_variant 0.15
gyrA 7532 c.231T>C synonymous_variant 0.17
gyrA 7541 c.240C>G synonymous_variant 0.21
gyrA 7547 c.246C>T synonymous_variant 0.21
gyrA 7562 c.261C>T synonymous_variant 0.15
gyrA 7571 c.270G>C synonymous_variant 0.14
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7710 c.409_411delTTGinsCTC synonymous_variant 0.14
gyrA 7715 c.414G>C synonymous_variant 0.14
gyrA 7725 c.424C>T synonymous_variant 0.14
gyrA 8090 c.789C>A synonymous_variant 0.14
gyrA 8096 c.795T>A synonymous_variant 0.15
gyrA 8111 c.810G>C synonymous_variant 0.15
gyrA 8121 c.820T>C synonymous_variant 0.15
gyrA 8129 c.828T>C synonymous_variant 0.14
gyrA 8135 c.834C>G synonymous_variant 0.14
gyrA 8528 c.1227G>C synonymous_variant 0.15
gyrA 8531 c.1230G>C synonymous_variant 0.14
gyrA 8543 c.1242C>G synonymous_variant 0.17
gyrA 8546 c.1245T>C synonymous_variant 0.16
gyrA 8553 c.1252C>A synonymous_variant 0.14
gyrA 8561 c.1260A>C synonymous_variant 0.14
gyrA 8897 c.1596T>C synonymous_variant 0.14
gyrA 8903 c.1602T>C synonymous_variant 0.17
gyrA 8933 c.1632G>C synonymous_variant 0.18
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.15
gyrA 8966 c.1665C>G synonymous_variant 0.15
gyrA 8967 p.Ala556Arg missense_variant 0.15
gyrA 9143 c.1842T>C synonymous_variant 0.13
gyrA 9227 c.1926C>G synonymous_variant 0.13
gyrA 9230 c.1929T>C synonymous_variant 0.17
gyrA 9233 c.1932C>G synonymous_variant 0.17
gyrA 9267 p.Asn656Gly missense_variant 0.17
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 0.13
gyrA 9335 c.2034G>C synonymous_variant 0.15
fgd1 491259 c.477T>C synonymous_variant 0.15
fgd1 491289 c.507C>G synonymous_variant 0.14
fgd1 491292 c.510G>C synonymous_variant 0.14
fgd1 491295 c.513C>G synonymous_variant 0.14
fgd1 491296 p.Val172Ile missense_variant 0.14
fgd1 491307 c.525C>G synonymous_variant 0.13
fgd1 491742 c.960T>C synonymous_variant 0.98
mshA 575719 c.372C>T synonymous_variant 0.13
mshA 575907 p.Ala187Val missense_variant 0.9
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760101 c.295T>C synonymous_variant 0.15
rpoB 760112 c.306T>C synonymous_variant 0.15
rpoB 760118 c.312T>G synonymous_variant 0.16
rpoB 760121 c.315T>C synonymous_variant 0.16
rpoB 760130 p.Asp108Glu missense_variant 0.15
rpoB 760139 c.333A>G synonymous_variant 0.15
rpoB 760142 c.336C>G synonymous_variant 0.15
rpoB 760181 c.375T>C synonymous_variant 0.14
rpoB 760184 c.378A>G synonymous_variant 0.14
rpoB 760310 c.504G>C synonymous_variant 0.14
rpoB 760340 c.534G>T synonymous_variant 0.13
rpoB 760376 p.Asp190Glu missense_variant 0.16
rpoB 760380 p.Thr192Leu missense_variant 0.15
rpoB 760406 c.600G>C synonymous_variant 0.14
rpoB 760412 c.606C>G synonymous_variant 0.15
rpoB 760424 c.618C>G synonymous_variant 0.16
rpoB 760430 c.624T>C synonymous_variant 0.16
rpoB 760475 c.669A>G synonymous_variant 0.17
rpoB 760481 c.675G>C synonymous_variant 0.17
rpoB 760484 c.678A>G synonymous_variant 0.17
rpoB 761006 c.1200C>G synonymous_variant 0.15
rpoB 761015 c.1209G>C synonymous_variant 0.15
rpoB 761021 c.1215G>C synonymous_variant 0.13
rpoB 761027 c.1221A>G synonymous_variant 0.13
rpoB 761036 c.1230G>C synonymous_variant 0.13
rpoB 761102 c.1296A>G synonymous_variant 0.14
rpoB 761195 c.1389G>C synonymous_variant 0.13
rpoB 761373 p.Val523His missense_variant 0.14
rpoB 761408 c.1602G>C synonymous_variant 0.14
rpoB 761588 c.1782C>T synonymous_variant 0.13
rpoB 761606 c.1800C>G synonymous_variant 0.17
rpoB 761612 c.1806G>C synonymous_variant 0.16
rpoB 761615 c.1809A>C synonymous_variant 0.15
rpoB 761636 c.1830G>T synonymous_variant 0.15
rpoB 761645 c.1839C>G synonymous_variant 0.15
rpoB 761648 c.1842T>C synonymous_variant 0.14
rpoB 761657 c.1851C>G synonymous_variant 0.13
rpoB 762008 c.2202C>T synonymous_variant 0.14
rpoB 762014 c.2208C>T synonymous_variant 0.14
rpoB 762017 c.2211A>G synonymous_variant 0.16
rpoB 762083 c.2277T>C synonymous_variant 0.14
rpoB 762086 c.2280G>C synonymous_variant 0.14
rpoB 762101 c.2295C>G synonymous_variant 0.17
rpoB 762114 p.Ile770Val missense_variant 0.17
rpoB 762131 c.2325C>G synonymous_variant 0.14
rpoB 762140 c.2334G>C synonymous_variant 0.13
rpoB 762167 c.2361T>C synonymous_variant 0.16
rpoB 762176 c.2370T>C synonymous_variant 0.13
rpoB 762185 c.2379G>C synonymous_variant 0.13
rpoC 763031 c.-339T>C upstream_gene_variant 0.98
rpoC 763148 c.-222G>C upstream_gene_variant 0.15
rpoC 763158 c.-212C>T upstream_gene_variant 0.13
rpoC 763190 c.-180C>T upstream_gene_variant 0.15
rpoC 763528 c.159G>A synonymous_variant 0.17
rpoC 763546 c.177A>G synonymous_variant 0.21
rpoC 763570 c.201G>C synonymous_variant 0.24
rpoC 763573 c.204G>C synonymous_variant 0.24
rpoC 763594 c.225C>T synonymous_variant 0.31
rpoC 763603 c.234C>T synonymous_variant 0.31
rpoC 763636 c.267T>C synonymous_variant 0.28
rpoC 763660 c.291T>G synonymous_variant 0.29
rpoC 763675 c.306C>G synonymous_variant 0.27
rpoC 763696 c.327T>C synonymous_variant 0.2
rpoC 763702 c.333C>G synonymous_variant 0.2
rpoC 763717 c.348T>C synonymous_variant 0.18
rpoC 763723 c.354G>C synonymous_variant 0.14
rpoC 763741 c.372C>T synonymous_variant 0.14
rpoC 763744 c.375G>C synonymous_variant 0.16
rpoC 763765 c.396T>C synonymous_variant 0.2
rpoC 763774 c.405G>C synonymous_variant 0.2
rpoC 763807 c.438T>C synonymous_variant 0.21
rpoC 763816 c.447C>G synonymous_variant 0.19
rpoC 763835 p.Ala156Met missense_variant 0.15
rpoC 763853 p.Val162Ile missense_variant 0.21
rpoC 763858 c.489A>G synonymous_variant 0.2
rpoC 763872 p.Gly168Ala missense_variant 0.21
rpoC 763876 p.Glu169Asp missense_variant 0.22
rpoC 763879 c.510A>G synonymous_variant 0.21
rpoC 763888 c.519G>C synonymous_variant 0.2
rpoC 763891 c.522G>C synonymous_variant 0.17
rpoC 763894 c.525A>G synonymous_variant 0.17
rpoC 763900 c.531G>C synonymous_variant 0.19
rpoC 763936 c.567C>G synonymous_variant 0.19
rpoC 763939 c.570G>A synonymous_variant 0.2
rpoC 763942 c.573C>G synonymous_variant 0.19
rpoC 763948 c.579G>A synonymous_variant 0.18
rpoC 763949 c.580C>A synonymous_variant 0.18
rpoC 763954 c.585C>G synonymous_variant 0.17
rpoC 763963 c.594C>T synonymous_variant 0.15
rpoC 764266 c.897T>C synonymous_variant 0.14
rpoC 764269 c.900G>C synonymous_variant 0.15
rpoC 764272 c.903G>C synonymous_variant 0.16
rpoC 764278 c.909A>G synonymous_variant 0.16
rpoC 764446 c.1077T>C synonymous_variant 0.14
rpoC 764449 c.1080G>C synonymous_variant 0.14
rpoC 764452 c.1083T>C synonymous_variant 0.14
rpoC 764458 c.1089G>C synonymous_variant 0.14
rpoC 764911 c.1542A>G synonymous_variant 0.14
rpoC 764932 c.1563C>A synonymous_variant 0.18
rpoC 764935 c.1566T>C synonymous_variant 0.18
rpoC 764948 c.1579T>C synonymous_variant 0.17
rpoC 764968 c.1599T>C synonymous_variant 0.2
rpoC 764995 c.1626C>G synonymous_variant 0.17
rpoC 765034 c.1665T>C synonymous_variant 0.13
rpoC 765478 c.2109T>C synonymous_variant 0.13
rpoC 765499 c.2130C>G synonymous_variant 0.15
rpoC 765529 c.2160C>T synonymous_variant 0.16
rpoC 765541 c.2172C>G synonymous_variant 0.16
rpoC 765553 c.2184C>T synonymous_variant 0.18
rpoC 765556 c.2187G>C synonymous_variant 0.18
rpoC 765559 c.2190G>C synonymous_variant 0.18
rpoC 765580 c.2211G>C synonymous_variant 0.17
rpoC 765700 c.2331T>C synonymous_variant 0.17
rpoC 765772 c.2403C>G synonymous_variant 0.13
rpoC 765784 c.2415C>G synonymous_variant 0.13
rpoC 765793 c.2424C>G synonymous_variant 0.13
rpoC 765796 c.2427C>T synonymous_variant 0.14
rpoC 765811 c.2442T>C synonymous_variant 0.13
rpoC 765814 c.2445A>G synonymous_variant 0.13
rpoC 765835 c.2466C>T synonymous_variant 0.16
rpoC 765883 c.2514C>G synonymous_variant 0.15
rpoC 765886 c.2517C>G synonymous_variant 0.15
rpoC 765892 c.2523T>C synonymous_variant 0.18
rpoC 765937 c.2568T>C synonymous_variant 0.19
rpoC 765967 c.2598C>T synonymous_variant 0.18
rpoC 765982 c.2613C>G synonymous_variant 0.2
rpoC 765994 c.2625A>T synonymous_variant 0.21
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.17
rpoC 766021 c.2652G>C synonymous_variant 0.16
rpoC 766027 c.2658G>C synonymous_variant 0.16
rpoC 766043 p.Gln892Glu missense_variant 0.15
rpoC 766462 c.3093G>C synonymous_variant 0.14
rpoC 766483 c.3114G>C synonymous_variant 0.16
rpoC 766484 p.Val1039Ile missense_variant 0.16
rpoC 766492 c.3123T>C synonymous_variant 0.16
rpoC 766645 p.Glu1092Asp missense_variant 0.92
rpoC 766765 c.3396A>C synonymous_variant 0.13
rpoC 766774 c.3405T>C synonymous_variant 0.15
rpoC 766801 c.3432C>G synonymous_variant 0.19
rpoC 766804 c.3435A>G synonymous_variant 0.19
rpoC 766861 c.3492G>C synonymous_variant 0.17
rpoC 766864 c.3495G>C synonymous_variant 0.14
rpoC 766933 c.3564A>G synonymous_variant 0.13
rpoC 766963 c.3594T>C synonymous_variant 0.18
rpoC 766972 c.3603G>C synonymous_variant 0.21
rpoC 766996 c.3627C>T synonymous_variant 0.21
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.22
rpoC 767014 c.3645G>C synonymous_variant 0.22
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.18
rpoC 767059 c.3690T>G synonymous_variant 0.17
rpoC 767062 c.3693C>A synonymous_variant 0.17
rpoC 767098 c.3729T>C synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 0.99
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781700 c.141G>C synonymous_variant 0.14
rpsL 781703 c.144G>T synonymous_variant 0.14
rpsL 781715 c.156T>C synonymous_variant 0.15
rpsL 781728 c.169T>C synonymous_variant 0.15
rpsL 781754 c.195G>C synonymous_variant 0.14
rpsL 781760 c.201T>C synonymous_variant 0.16
rpsL 781772 c.213C>A synonymous_variant 0.16
rpsL 781808 c.249C>T synonymous_variant 0.16
rpsL 781811 c.252C>T synonymous_variant 0.17
rpsL 781832 c.273T>C synonymous_variant 0.2
rpsL 781838 c.279G>C synonymous_variant 0.14
rpsL 781841 c.282C>G synonymous_variant 0.14
rpsL 781865 c.306G>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.16
rpsL 781877 c.318T>C synonymous_variant 0.16
rpsL 781892 c.333A>G synonymous_variant 0.21
rpsL 781898 c.339A>T synonymous_variant 0.18
rpsL 781916 c.357T>C synonymous_variant 0.16
rpsL 781929 p.Gly124Ser missense_variant 0.15
rplC 800703 c.-106T>C upstream_gene_variant 0.14
rplC 800715 c.-94A>C upstream_gene_variant 0.19
rplC 800720 c.-89T>C upstream_gene_variant 0.19
rplC 800723 c.-86C>G upstream_gene_variant 0.18
rplC 800747 c.-62C>G upstream_gene_variant 0.21
rplC 800771 c.-38C>T upstream_gene_variant 0.17
rplC 800794 c.-15A>G upstream_gene_variant 0.16
rplC 800796 c.-13A>G upstream_gene_variant 0.16
rplC 800798 c.-10_-9delGG upstream_gene_variant 0.16
rplC 800814 c.6A>G synonymous_variant 0.19
rplC 800817 c.9A>T synonymous_variant 0.18
fbiC 1303914 c.984C>G synonymous_variant 0.13
fbiC 1303920 c.990C>T synonymous_variant 0.14
fbiC 1303947 c.1017T>G synonymous_variant 0.14
fbiC 1303948 p.Gly340Arg missense_variant 0.14
fbiC 1303953 p.Asp341Glu missense_variant 0.15
fbiC 1303956 c.1026A>G synonymous_variant 0.14
fbiC 1303961 p.Arg344Leu missense_variant 0.14
fbiC 1303971 c.1041T>C synonymous_variant 0.15
fbiC 1303980 c.1050G>A synonymous_variant 0.16
fbiC 1303998 c.1068T>G synonymous_variant 0.19
fbiC 1304004 c.1074A>G synonymous_variant 0.19
fbiC 1304008 c.1078T>C synonymous_variant 0.16
fbiC 1304022 c.1092T>C synonymous_variant 0.14
fbiC 1304031 c.1101C>G synonymous_variant 0.15
fbiC 1304034 c.1104A>G synonymous_variant 0.16
fbiC 1304040 c.1110C>G synonymous_variant 0.15
fbiC 1304046 c.1116C>G synonymous_variant 0.13
fbiC 1304049 c.1119T>C synonymous_variant 0.14
fbiC 1304050 c.1120T>C synonymous_variant 0.14
fbiC 1304893 p.Gly655Ser missense_variant 0.12
fbiC 1304910 c.1980G>C synonymous_variant 0.14
fbiC 1304916 c.1986T>C synonymous_variant 0.15
fbiC 1304928 c.1998T>C synonymous_variant 0.13
fbiC 1304937 c.2007G>C synonymous_variant 0.15
fbiC 1304958 c.2028T>G synonymous_variant 0.14
Rv1258c 1406760 c.580_581insC frameshift_variant 0.95
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472300 n.455C>T non_coding_transcript_exon_variant 0.13
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.16
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.16
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.19
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.18
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.23
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.24
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.21
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.15
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.15
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.2
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.21
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.2
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.14
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.15
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.13
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.17
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.14
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.13
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.13
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.13
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.18
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.13
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.15
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.15
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.13
rrl 1475013 n.1356G>A non_coding_transcript_exon_variant 0.13
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.23
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.24
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.25
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.24
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.22
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.21
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.16
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.16
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.16
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.17
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.14
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.15
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.15
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.19
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.14
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.14
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.15
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.2
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.18
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.25
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.14
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.15
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.15
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.14
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.14
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.15
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.16
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.14
fabG1 1673380 c.-60C>G upstream_gene_variant 0.19
fabG1 1673710 p.Leu91Ile missense_variant 0.15
fabG1 1673716 p.Ala93Lys missense_variant 0.17
fabG1 1673733 p.Met98Ile missense_variant 0.13
rpsA 1833661 c.120A>G synonymous_variant 0.15
rpsA 1833667 c.126C>G synonymous_variant 0.16
rpsA 1833724 c.183C>G synonymous_variant 0.14
rpsA 1833727 c.186G>C synonymous_variant 0.14
rpsA 1833802 c.261A>G synonymous_variant 0.14
rpsA 1833811 c.270G>T synonymous_variant 0.15
rpsA 1833838 c.297G>C synonymous_variant 0.16
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833847 c.306C>G synonymous_variant 0.19
rpsA 1833856 c.315A>G synonymous_variant 0.19
rpsA 1833874 c.333T>C synonymous_variant 0.19
rpsA 1833886 c.345C>G synonymous_variant 0.14
rpsA 1833928 c.387G>C synonymous_variant 0.18
rpsA 1833940 c.399C>G synonymous_variant 0.17
rpsA 1833971 c.430C>T synonymous_variant 0.18
rpsA 1833979 c.438T>C synonymous_variant 0.16
rpsA 1834000 c.459G>C synonymous_variant 0.17
rpsA 1834021 c.480C>T synonymous_variant 0.15
rpsA 1834030 c.489C>G synonymous_variant 0.16
rpsA 1834177 c.636A>C synonymous_variant 0.96
rpsA 1834303 c.762T>C synonymous_variant 0.18
rpsA 1834306 c.765T>C synonymous_variant 0.18
rpsA 1834348 c.807T>C synonymous_variant 0.19
rpsA 1834366 c.825A>G synonymous_variant 0.15
rpsA 1834396 c.855G>C synonymous_variant 0.2
rpsA 1834411 c.870T>C synonymous_variant 0.2
rpsA 1834417 c.876G>C synonymous_variant 0.19
rpsA 1834423 c.882G>C synonymous_variant 0.13
rpsA 1834465 c.924T>C synonymous_variant 0.14
rpsA 1834468 c.927A>G synonymous_variant 0.14
rpsA 1834489 c.948T>C synonymous_variant 0.19
rpsA 1834513 c.972C>G synonymous_variant 0.26
rpsA 1834528 c.987T>C synonymous_variant 0.22
rpsA 1834540 c.999G>C synonymous_variant 0.19
rpsA 1834546 c.1005T>C synonymous_variant 0.19
rpsA 1834555 c.1014T>G synonymous_variant 0.17
rpsA 1834609 c.1068T>C synonymous_variant 0.15
rpsA 1834618 c.1077G>C synonymous_variant 0.15
rpsA 1834633 c.1092A>G synonymous_variant 0.19
rpsA 1834639 c.1098T>C synonymous_variant 0.19
rpsA 1834654 p.Glu371Asp missense_variant 0.17
rpsA 1834732 c.1191T>C synonymous_variant 0.14
rpsA 1834733 p.Ala398Ser missense_variant 0.14
rpsA 1834738 c.1197A>G synonymous_variant 0.15
rpsA 1834753 c.1212T>C synonymous_variant 0.14
rpsA 1834765 p.Glu408Asp missense_variant 0.13
rpsA 1834775 p.Ala412Thr missense_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101920 c.1123A>C synonymous_variant 0.14
ndh 2101924 c.1119T>G synonymous_variant 0.14
ndh 2103088 c.-46T>G upstream_gene_variant 0.98
katG 2154724 p.Arg463Leu missense_variant 0.95
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289997 c.-756G>C upstream_gene_variant 0.13
pncA 2290015 c.-774A>C upstream_gene_variant 0.15
pncA 2290024 c.-783C>G upstream_gene_variant 0.14
pncA 2290030 c.-791_-789delAATinsCAC upstream_gene_variant 0.17
pncA 2290033 c.-792C>G upstream_gene_variant 0.18
pncA 2290038 c.-797G>A upstream_gene_variant 0.17
pncA 2290042 c.-801T>C upstream_gene_variant 0.17
pncA 2290069 c.-828C>A upstream_gene_variant 0.14
pncA 2290072 c.-831T>C upstream_gene_variant 0.13
Rv2752c 3065109 p.Arg361Ser missense_variant 0.13
thyX 3067295 c.651C>T synonymous_variant 0.14
thyX 3067316 c.630A>G synonymous_variant 0.19
thyX 3067325 c.621A>G synonymous_variant 0.24
thyX 3067349 c.597G>C synonymous_variant 0.23
thyX 3067355 c.591A>C synonymous_variant 0.21
thyX 3067367 c.579G>C synonymous_variant 0.2
thyX 3067373 c.573C>G synonymous_variant 0.18
thyX 3067376 c.570G>A synonymous_variant 0.2
thyX 3067391 c.555G>C synonymous_variant 0.19
thyX 3067394 c.552G>C synonymous_variant 0.19
thyX 3067439 c.507A>G synonymous_variant 0.19
thyX 3067445 c.501C>G synonymous_variant 0.18
thyX 3067457 c.489C>G synonymous_variant 0.18
thyX 3067465 p.Ile161Val missense_variant 0.2
thyX 3067475 c.471A>G synonymous_variant 0.17
thyX 3067490 c.456C>G synonymous_variant 0.2
thyX 3067493 c.453A>G synonymous_variant 0.2
thyX 3067515 p.Ser144Thr missense_variant 0.22
thyX 3067530 p.Ala139Ser missense_variant 0.19
thyX 3067545 p.Glu134Ala missense_variant 0.22
thyX 3067549 p.Thr133Ala missense_variant 0.19
thyX 3067556 p.His130Gln missense_variant 0.24
thyX 3067559 c.387C>G synonymous_variant 0.26
thyX 3067565 p.Asp127Glu missense_variant 0.26
thyX 3067570 p.Ala126Pro missense_variant 0.26
thyX 3067577 c.369G>A synonymous_variant 0.24
thyX 3067583 c.363C>G synonymous_variant 0.22
thyX 3067601 p.Arg115His missense_variant 0.26
thyX 3067611 p.Lys112Thr missense_variant 0.31
thyX 3067619 c.327A>C synonymous_variant 0.31
thyX 3067631 c.315C>G synonymous_variant 0.31
thyX 3067634 c.312C>G synonymous_variant 0.31
thyX 3067652 c.294T>C synonymous_variant 0.28
thyX 3067661 c.285C>G synonymous_variant 0.28
thyX 3067685 c.261A>C synonymous_variant 0.29
thyX 3067691 p.Ile85Leu missense_variant 0.28
thyX 3067694 c.252G>C synonymous_variant 0.3
thyX 3067718 c.228C>G synonymous_variant 0.27
thyX 3067721 c.225T>C synonymous_variant 0.28
thyX 3067727 c.219A>C synonymous_variant 0.27
thyX 3067736 p.Phe70Leu missense_variant 0.26
thyX 3067739 c.207T>C synonymous_variant 0.25
thyX 3067761 p.Arg62Lys missense_variant 0.23
thyX 3067765 p.Leu61Ile missense_variant 0.23
thyX 3067772 c.174C>G synonymous_variant 0.21
thyX 3067781 c.165C>A synonymous_variant 0.23
thyX 3067793 c.153T>C synonymous_variant 0.2
thyX 3067799 c.147G>A synonymous_variant 0.2
thyX 3067802 c.144C>G synonymous_variant 0.2
thyX 3067814 c.132T>C synonymous_variant 0.18
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
clpC1 4039397 c.1308A>G synonymous_variant 0.14
clpC1 4039409 c.1296T>C synonymous_variant 0.15
clpC1 4039412 c.1293T>G synonymous_variant 0.14
clpC1 4039415 p.Glu430Asp missense_variant 0.13
clpC1 4039430 c.1275T>C synonymous_variant 0.14
clpC1 4040021 c.684A>C synonymous_variant 0.13
clpC1 4040024 c.681A>G synonymous_variant 0.15
clpC1 4040363 c.342A>T synonymous_variant 0.14
clpC1 4040369 c.336C>G synonymous_variant 0.14
clpC1 4040380 c.325T>C synonymous_variant 0.14
clpC1 4040393 c.312G>C synonymous_variant 0.14
clpC1 4040411 c.294T>C synonymous_variant 0.24
clpC1 4040423 c.282A>G synonymous_variant 0.24
clpC1 4040426 c.279T>C synonymous_variant 0.24
clpC1 4040431 c.274T>C synonymous_variant 0.3
clpC1 4040444 c.261C>T synonymous_variant 0.32
clpC1 4040450 c.255A>G synonymous_variant 0.3
clpC1 4040459 c.246C>G synonymous_variant 0.29
clpC1 4040465 c.240T>C synonymous_variant 0.28
clpC1 4040471 c.234T>C synonymous_variant 0.27
clpC1 4040477 c.228G>C synonymous_variant 0.25
clpC1 4040480 c.225T>G synonymous_variant 0.26
clpC1 4040501 c.204C>T synonymous_variant 0.21
clpC1 4040522 c.183T>C synonymous_variant 0.22
clpC1 4040528 c.177G>C synonymous_variant 0.23
clpC1 4040531 c.174T>C synonymous_variant 0.21
clpC1 4040534 c.171A>G synonymous_variant 0.21
clpC1 4040537 c.168G>C synonymous_variant 0.2
clpC1 4040546 c.159G>C synonymous_variant 0.18
clpC1 4040551 c.154T>C synonymous_variant 0.16
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 0.98
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0