Rv0001 - c.645A>C
Drug resistance types
3 Sensitive
3 RR-TB
34 HR-TB
49 MDR-TB
53 Pre-XDR-TB
17 XDR-TB
83 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 106 |
| lineage4.9 | 38 |
| lineage4.9;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1 | 5 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.1;lineage4.9 | 11 |
| lineage3 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| lineage1.1.3.1 | 1 |
| 12 | |
| M.canetti;lineage2.2 | 2 |
| La1.2.BCG | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage4.9 | 6 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1 | 2 |
| lineage4 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.2.2 | 2 |
| lineage3.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;lineage1.1.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage4.3.2 | 1 |
| La3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;lineage4 | 1 |
| La1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 242 |
Geographic prevalence
Country level data for this variant is available for 28 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR4034389 | MDR-TB | lineage4.1.2.1 | za | SRR6045548 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046066 | Other | lineage4.9 | None | ERR9992678 | XDR-TB | lineage4.1.2.1 | None | ERR2516091 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR2515583 | MDR-TB | lineage4.1.2.1 | za | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR4831595 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR4809252 | MDR-TB | lineage4.1.2.1 | za | SRR9971183 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR8025355 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR10610164 | MDR-TB | lineage4.1.2.1 | None | ERR2515361 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR5918116 | XDR-TB | lineage4.1.2.1 | za | ERR11488762 | MDR-TB | lineage4.1.2.1 | None | ERR8976096 | MDR-TB | lineage4.1.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR833194 | MDR-TB | lineage4.1.2.1 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR6207282 | MDR-TB | lineage4.1.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SAMN02053753 | MDR-TB | lineage4.1.2.1 | za | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR9787197 | Other | None | SRR3675236 | Other | None | ERR11775345 | MDR-TB | lineage4.1.2.1 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675275 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | HR-TB | lineage3 | None | ERR2515542 | MDR-TB | lineage4.1.2.1 | za | ERR9992702 | XDR-TB | lineage4.1.2.1 | None | ERR2515588 | Pre-XDR-TB | lineage4.1.2.1 | za | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1180181 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797069 | Other | lineage4.9 | None | SRR10315618 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR9992645 | XDR-TB | lineage4.1.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR2516045 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2515982 | MDR-TB | lineage4.1.2.1 | za | SRR4034393 | MDR-TB | lineage4.1.2.1 | None | ERR9992692 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1180419 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2027263 | Other | lineage4 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR9993148 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10610161 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR9971281 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR7737652 | MDR-TB | lineage4.1.2.1 | None | ERR10748222 | MDR-TB | lineage4.1.2.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SAMN02585961 | Pre-XDR-TB | lineage4.1.2.1 | za | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR9971367 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9993017 | XDR-TB | lineage4.1.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR9971236 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR2101482 | MDR-TB | lineage4.1.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9992701 | XDR-TB | lineage4.1.2.1 | None | ERR11488651 | MDR-TB | lineage4.1.2.1 | None | SRR833075 | MDR-TB | lineage4.1.2.1 | None | SRR1181171 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR2515135 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR8975696 | XDR-TB | lineage4.1.2.1 | None | ERR9806949 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6044875 | Other | lineage4.9 | None | SRR4034386 | MDR-TB | lineage4.1.2.1 | za | ERR11488567 | MDR-TB | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR8975760 | XDR-TB | lineage4.1.2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR4034390 | MDR-TB | lineage4.1.2.1 | za | ERR10748250 | XDR-TB | lineage4.1.2.1 | None | SRR833038 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR833128 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806894 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR2515739 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR7737696 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6045053 | Other | lineage4 | None | SRR7496509 | Other | None | ERR11773741 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR9786671 | Other | None | ERR9786843 | Other | None | ERR11252736 | Other | lineage4.9 | None | ERR11773716 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1196768 | MDR-TB | None | SRR4034388 | MDR-TB | lineage4.1.2.1 | za | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR2516023 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR833131 | MDR-TB | lineage4.1.2.1 | None | ERR9993049 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR9992693 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10315628 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR10315617 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR833032 | MDR-TB | lineage4.1.2.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9806812 | MDR-TB | lineage4.1.2.1 | None | ERR176741 | Other | lineage4.9 | None | SAMN02053783 | MDR-TB | lineage4.1.2.1 | za | SRR4034387 | MDR-TB | lineage4.1.2.1 | za | SRR6045555 | Other | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9806800 | MDR-TB | lineage4.1.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR9992674 | XDR-TB | lineage4.1.2.1 | None | ERR2515199 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR9993086 | XDR-TB | lineage4.1.2.1 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1183124 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR6896523 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9992670 | XDR-TB | lineage4.1.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR2101360 | MDR-TB | lineage4.1.2.1 | None | SRR9971071 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5987408 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR832981 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1063895 | MDR-TB | lineage4.1.2.1 | None | SRR6982216 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1172728 | RR-TB | La3 | None | SAMN02585972 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR3797064 | Other | La3;lineage4.9 | None | ERR2515667 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR9992907 | XDR-TB | lineage4.1.2.1 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR2515264 | Pre-XDR-TB | lineage4.1.2.1 | za | SRR21732547 | MDR-TB | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR6896411 | MDR-TB | lineage4.1.2.1 | None | ERR11488403 | MDR-TB | lineage4.1.2.1 | None | SRR3675457 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9971101 | XDR-TB | lineage4.1.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR1181279 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1172817 | Other | La3 | None | ERR7911682 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR4769450 | Other | lineage4.9 | None | ERR9993034 | MDR-TB | lineage4.1.2.1 | None | SRR1181092 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR3675311 | Other | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR10610314 | MDR-TB | lineage4.1.2.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR9971345 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR9992854 | XDR-TB | lineage4.1.2.1 | None | ERR10748163 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR7737700 | MDR-TB | lineage4.1.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | SRR3675572 | Other | None | ERR9786604 | Other | None | ERR9117709 | Other | None | SRR6789626 | Other | None | SRR18213713 | HR-TB | None | ERR553053 | MDR-TB | lineage4.1.2.1 | sz | SRR2101574 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1181284 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1196583 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR553216 | MDR-TB | lineage4.1.2.1 | sz | SRR3675549 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2516017 | MDR-TB | lineage4.1.2.1 | za | SRR1180276 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None |
|---|
