Rv0001 - c.645A>C


Drug resistance types
3 Sensitive 3 RR-TB 34 HR-TB 49 MDR-TB 53 Pre-XDR-TB 17 XDR-TB 83 Other
lineage Counts
lineage Count
lineage4.9 38
lineage4.1.2.1 106
M.canetti;lineage4.9 1
lineage4.1.3 2
lineage2.1;lineage4.9 11
La3;lineage2 1
lineage2.1 2
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9;lineage6.3 8
La3;lineage4.9 6
M.canetti;lineage2.2 2
12
La1.2.BCG 1
lineage2.2.1 5
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9 1
La1.7.1 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1 1
lineage2.1;lineage4.3.2;lineage4.9 1
M.canetti;lineage1 1
lineage4.6.3;lineage4.9 1
lineage4.3.2 1
lineage4.9;lineage7 1
La1.7;M.canetti;lineage4.9 2
La3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;lineage4 1
lineage4 2
lineage3 3
La3;lineage1.1.2 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.6.2.2 2
lineage4.1.1.1 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage1.1.3.1 1
La1;lineage4.9 1
La3;lineage2.1;lineage6.3 1
lineage4.9;lineage6.3 2
La3;M.canetti;lineage2.2.1 1
La3;lineage2.1;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.2 1
spoligotype Counts
spoligotype Count
None 242
Geographic prevalence
Country level data for this variant is available for 28 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4769474 HR-TB lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR9971071 Pre-XDR-TB lineage4.1.2.1 None
ERR2515361 Pre-XDR-TB lineage4.1.2.1 za
ERR5987408 Pre-XDR-TB lineage4.1.2.1 None
ERR2515135 Pre-XDR-TB lineage4.1.2.1 za
ERR8975696 XDR-TB lineage4.1.2.1 None
ERR1063895 MDR-TB lineage4.1.2.1 None
SRR6982216 Pre-XDR-TB lineage4.1.2.1 None
ERR8976096 MDR-TB lineage4.1.2.1 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
ERR2515264 Pre-XDR-TB lineage4.1.2.1 za
ERR9786611 HR-TB lineage4.1.3 None
SRR6896411 MDR-TB lineage4.1.2.1 None
SRR3675457 Other lineage4.9 None
ERR473332 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR1181279 Pre-XDR-TB lineage4.1.2.1 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
SRR4034390 MDR-TB lineage4.1.2.1 za
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4769450 Other lineage4.9 None
SRR1181092 Pre-XDR-TB lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR9992854 XDR-TB lineage4.1.2.1 None
ERR10748163 Pre-XDR-TB lineage4.1.2.1 None
SRR7496509 Other None
ERR11773741 Pre-XDR-TB lineage4.1.2.1 None
ERR9786671 Other None
ERR11773716 Pre-XDR-TB lineage4.1.2.1 None
ERR11775345 MDR-TB lineage4.1.2.1 None
SRR2101574 Pre-XDR-TB lineage4.1.2.1 None
SRR3675275 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR4798493 MDR-TB lineage2.2.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR2515542 MDR-TB lineage4.1.2.1 za
SRR833131 MDR-TB lineage4.1.2.1 None
ERR9993049 Pre-XDR-TB lineage4.1.2.1 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR6046141 Other lineage4.9 None
ERR3283031 Other La3;lineage4.9 None
ERR2516045 Pre-XDR-TB lineage4.1.2.1 za
SRR6045242 Other lineage2.1;lineage4.9 None
ERR2515982 MDR-TB lineage4.1.2.1 za
SRR4034393 MDR-TB lineage4.1.2.1 None
ERR176741 Other lineage4.9 None
SAMN02053783 MDR-TB lineage4.1.2.1 za
SRR4034389 MDR-TB lineage4.1.2.1 za
SRR4034387 MDR-TB lineage4.1.2.1 za
SRR6045555 Other lineage4.9 None
SRR6045548 Other lineage4.9 None
ERR067712 Sensitive lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR9992674 XDR-TB lineage4.1.2.1 None
ERR2515199 Pre-XDR-TB lineage4.1.2.1 za
ERR9993086 XDR-TB lineage4.1.2.1 None
ERR9993148 Pre-XDR-TB lineage4.1.2.1 None
ERR10610161 Pre-XDR-TB lineage4.1.2.1 None
SRR6045347 Other lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
ERR4831595 Pre-XDR-TB lineage4.1.2.1 None
SRR9971367 Pre-XDR-TB lineage4.1.2.1 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR9993017 XDR-TB lineage4.1.2.1 None
SRR15014655 Other M.canetti;lineage1 None
ERR3283011 Other La3;lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR9971236 Pre-XDR-TB lineage4.1.2.1 None
SRR4034391 MDR-TB lineage4.1.2.1 None
ERR9117805 Other lineage4.3.2 None
ERR3797070 Other lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9992701 XDR-TB lineage4.1.2.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR6896523 Pre-XDR-TB lineage4.1.2.1 None
SRR1181171 Pre-XDR-TB lineage4.1.2.1 None
ERR108471 HR-TB lineage4.9 None
SRR2101360 MDR-TB lineage4.1.2.1 None
SRR832981 Pre-XDR-TB lineage4.1.2.1 None
SRR1172728 RR-TB La3 None
SRR833194 MDR-TB lineage4.1.2.1 None
SAMN02585972 Pre-XDR-TB lineage4.1.2.1 za
ERR3797064 Other La3;lineage4.9 None
ERR9992907 XDR-TB lineage4.1.2.1 None
ERR3283042 HR-TB lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR21732547 MDR-TB lineage4.1.2.1 None
ERR11488403 MDR-TB lineage4.1.2.1 None
ERR3797047 MDR-TB lineage4.9 None
SRR6785267 Other lineage2.2.1 None
ERR11488567 MDR-TB lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR7911682 Pre-XDR-TB lineage4.1.2.1 za
SRR833038 Pre-XDR-TB lineage4.1.2.1 None
SRR3675311 Other lineage4.9 None
ERR9806894 Pre-XDR-TB lineage4.1.2.1 None
ERR2515739 Pre-XDR-TB lineage4.1.2.1 za
SRR9971345 Pre-XDR-TB lineage4.1.2.1 None
SAMN02053753 MDR-TB lineage4.1.2.1 za
ERR7737700 MDR-TB lineage4.1.2.1 None
ERR3283028 Other La3;lineage4 None
ERR7737696 Pre-XDR-TB lineage4.1.2.1 None
SRR6045053 Other lineage4 None
ERR9117709 Other None
SRR6789626 Other None
SRR3675236 Other None
SRR1196768 MDR-TB None
SRR28044873 Pre-XDR-TB lineage3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR9992702 XDR-TB lineage4.1.2.1 None
ERR553216 MDR-TB lineage4.1.2.1 sz
ERR2515588 Pre-XDR-TB lineage4.1.2.1 za
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR10315628 Pre-XDR-TB lineage4.1.2.1 None
ERR2516017 MDR-TB lineage4.1.2.1 za
SRR10315617 Pre-XDR-TB lineage4.1.2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR9806800 MDR-TB lineage4.1.2.1 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR1180419 Pre-XDR-TB lineage4.1.2.1 None
SRR6046593 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR10748222 MDR-TB lineage4.1.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4809252 MDR-TB lineage4.1.2.1 za
ERR3283047 Sensitive La3;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR2446566 Other lineage4.9 None
SRR9971183 Pre-XDR-TB lineage4.1.2.1 None
ERR11488651 MDR-TB lineage4.1.2.1 None
SRR1172951 Other lineage4.9 None
ERR9992670 XDR-TB lineage4.1.2.1 None
ERR8025355 Pre-XDR-TB lineage4.1.2.1 None
SRR833075 MDR-TB lineage4.1.2.1 None
ERR10610164 MDR-TB lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
ERR9806949 Pre-XDR-TB lineage4.1.2.1 None
ERR5918116 XDR-TB lineage4.1.2.1 za
ERR11488762 MDR-TB lineage4.1.2.1 None
ERR2515667 Pre-XDR-TB lineage4.1.2.1 za
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR4034386 MDR-TB lineage4.1.2.1 za
SRR9971101 XDR-TB lineage4.1.2.1 None
ERR3797046 HR-TB lineage4.9 None
ERR8975760 XDR-TB lineage4.1.2.1 None
ERR4797588 MDR-TB lineage3 None
ERR10748250 XDR-TB lineage4.1.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1172817 Other La3 None
ERR9993034 MDR-TB lineage4.1.2.1 None
SRR6207282 MDR-TB lineage4.1.2.1 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR833128 Pre-XDR-TB lineage4.1.2.1 None
ERR3283018 HR-TB lineage4.9 None
ERR10610314 MDR-TB lineage4.1.2.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR3675572 Other None
SRR1184381 MDR-TB None
ERR9786604 Other None
ERR9786843 Other None
ERR11252736 Other lineage4.9 None
SRR18213713 HR-TB None
ERR9787197 Other None
ERR553053 MDR-TB lineage4.1.2.1 sz
SRR1181284 Pre-XDR-TB lineage4.1.2.1 None
SRR1196583 Other lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
SRR4034388 MDR-TB lineage4.1.2.1 za
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4800341 HR-TB lineage3 None
ERR2516023 Pre-XDR-TB lineage4.1.2.1 za
SRR3675549 Other lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR1180181 Pre-XDR-TB lineage4.1.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046046 Other lineage4.9 None
ERR9992693 Pre-XDR-TB lineage4.1.2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR3797069 Other lineage4.9 None
SRR1180276 Pre-XDR-TB lineage4.1.2.1 None
SRR833032 MDR-TB lineage4.1.2.1 None
ERR4817896 HR-TB lineage2.2.1 None
SRR10315618 Pre-XDR-TB lineage4.1.2.1 None
ERR3797048 Other La3;lineage4.9 None
ERR9992645 XDR-TB lineage4.1.2.1 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9806812 MDR-TB lineage4.1.2.1 None
ERR9992692 Pre-XDR-TB lineage4.1.2.1 None
SRR1184312 Other lineage2.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR9992678 XDR-TB lineage4.1.2.1 None
SRR6046133 HR-TB lineage4.9 None
ERR2516091 Pre-XDR-TB lineage4.1.2.1 za
SRR9971281 Pre-XDR-TB lineage4.1.2.1 None
ERR7737652 MDR-TB lineage4.1.2.1 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SAMN02585961 Pre-XDR-TB lineage4.1.2.1 za
ERR3804169 HR-TB lineage4.1.3 None
SRR1183124 Pre-XDR-TB lineage4.1.2.1 None
ERR2515583 MDR-TB lineage4.1.2.1 za
ERR9786986 HR-TB lineage4.1.2.1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR2101482 MDR-TB lineage4.1.2.1 None
SRR7496472 Other lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4799513 HR-TB lineage2.2 None
SRR6046540 Other lineage2.1;lineage4.9 None