SAMN02053783
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR2515361
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR9806949
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675574
|
Other
|
lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR2515264
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
SRR6046066
|
Other
|
lineage4.9
|
None
|
SRR1180419
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
ERR10748222
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6789626
|
Other
|
|
None
|
ERR4872119
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR4797588
|
MDR-TB
|
lineage3
|
None
|
SRR9971367
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR15014655
|
Other
|
M.canetti;lineage1
|
None
|
SRR1196546
|
Other
|
lineage4.9
|
None
|
SRR3675236
|
Other
|
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
ERR13289025
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage4.3.4.2.1
|
None
|
SRR1181171
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR3804169
|
HR-TB
|
lineage4.1.3
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
ERR5987408
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4800341
|
Other
|
lineage3
|
None
|
ERR1063895
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02585972
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
SRR3675549
|
Other
|
lineage4.9
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR3675581
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
SRR1181092
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR7496509
|
Other
|
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4798493
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13286118
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675311
|
Other
|
lineage4.9
|
None
|
SRR1184294
|
Other
|
lineage4.9
|
None
|
SRR833038
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR9992907
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR3797070
|
Other
|
lineage4.9
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR8976096
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9787197
|
Other
|
|
None
|
ERR6359045
|
Other
|
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3
|
None
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13289321
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9786671
|
Other
|
|
None
|
SRR833131
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2515542
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR7911670
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR1180276
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR19295647
|
Sensitive
|
lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
SRR6046397
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR6045380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR6045242
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR3283042
|
Other
|
lineage4.9
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR10748163
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675275
|
Other
|
lineage4.9
|
None
|
SRR4034386
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR11252736
|
Other
|
lineage4.9
|
None
|
SRR18213713
|
HR-TB
|
|
None
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
ERR3283019
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1180181
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9992678
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR833032
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR9992692
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
ERR11773741
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
ERR9806800
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3283031
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR9992674
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9993086
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6896411
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6896523
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR10610164
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9119525
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR11775345
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4831595
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR2101482
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
SRR1184380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR6046644
|
HR-TB
|
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9806812
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488403
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675524
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR2516023
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR9117805
|
Other
|
lineage4.3.2
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
SRR2101360
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6982216
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR5918116
|
XDR-TB
|
lineage4.1.2.1
|
za
|
ERR11488762
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9993017
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
SRR1172817
|
Other
|
La3
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
ERR2516045
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
SRR4034393
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10610314
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR10748250
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR1184346
|
HR-TB
|
lineage3.1
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR13286133
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
SRR6046485
|
Other
|
lineage4.9
|
None
|
ERR9992854
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR7737700
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9786843
|
Other
|
|
None
|
SRR1184381
|
MDR-TB
|
|
None
|
ERR11773716
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR28044873
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR13286066
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
SRR10315618
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR13289396
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
SRR9971281
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR4034391
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR833194
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675572
|
Other
|
|
None
|
SRR3675457
|
Other
|
lineage4.9
|
None
|
ERR10610161
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR3283036
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR13289284
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4818021
|
Other
|
La1.2.BCG;La1.8.1
|
None
|
ERR8975696
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9786986
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR13288870
|
MDR-TB
|
lineage2.2.2;lineage4.1.2.1
|
None
|
SRR1181284
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1196583
|
Other
|
lineage4.9
|
None
|
SRR4034388
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR6785267
|
Other
|
lineage2.2.1
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
ERR2515135
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
SRR9971101
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR3283028
|
Other
|
La3;lineage4
|
None
|
ERR9993049
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR2515667
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR2515982
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR9993148
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2516017
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR1181279
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR10315617
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR3797069
|
Other
|
lineage4.9
|
None
|
ERR7911682
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR9117721
|
HR-TB
|
La3;lineage1.1.2
|
None
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR7737696
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6044790
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR13289058
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
SRR9971183
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR4034389
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR2515739
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
SRR4034387
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR26331632
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13288945
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1184312
|
Other
|
lineage2.2.1
|
None
|
SRR29055668
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13288920
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR7737652
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
SRR6207282
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SAMN02585961
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR9806894
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1183124
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR9992701
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2515583
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR2516091
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
ERR4809252
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR9971345
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488651
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9992670
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR8025355
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR833075
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1165699
|
Other
|
lineage4.9
|
None
|
SRR9971236
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR832981
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1172728
|
RR-TB
|
La3
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR9117709
|
Other
|
|
None
|
ERR11488567
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
ERR8975760
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
ERR9993034
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR4034390
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR13289376
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR833128
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR7496472
|
Other
|
lineage4.9
|
None
|
ERR2515588
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
SAMN02053753
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR13289276
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR10315628
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
ERR9992645
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9786604
|
Other
|
|
None
|
ERR4831545
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR553053
|
MDR-TB
|
lineage4.1.2.1
|
sz
|
SRR21732547
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1172951
|
Other
|
lineage4.9
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1196768
|
MDR-TB
|
|
None
|
SRR2101574
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR9992702
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR553216
|
MDR-TB
|
lineage4.1.2.1
|
sz
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR9992693
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4817896
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR29056355
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
ERR2515199
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
SRR9971071
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|