Rv0001 - c.645A>C


Drug resistance types
9 Sensitive 2 RR-TB 31 HR-TB 54 MDR-TB 59 Pre-XDR-TB 20 XDR-TB 83 Other
lineage Counts
lineage Count
lineage4.1.2.1 120
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.9 38
lineage4 2
12
lineage4.6.2.2 2
lineage3 3
M.canetti;lineage1 1
lineage4.1.1.1 1
lineage4.1.2.1;lineage4.3.4.2.1 1
lineage4.1.3 2
La3;lineage4.9 6
lineage2.1;lineage6.3 2
lineage2.1;lineage4.9 11
La1.7.1;La1.7.X-unk4;lineage7 1
lineage2.1 2
lineage2.2.1 5
La3;lineage2.1;lineage4.9;lineage6.3 4
La1.2.BCG 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9;lineage6.3 8
M.canetti;lineage2.2 2
lineage4.9;lineage7 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage2 1
La3;lineage2.1;lineage4.9 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.9;lineage6.3 2
lineage4.3.2 1
La3 2
lineage2.2 1
lineage3.1 1
La1.7;M.canetti;lineage4.9 2
La1.2.BCG;La1.8.1 1
lineage2.2.2;lineage4.1.2.1 1
lineage4.6.1.1 1
La3;lineage4 1
La3;M.canetti;lineage2.2.1 1
La3;lineage1.1.2 1
lineage4.6.3;lineage4.9 1
lineage1.1.3.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1;lineage4.9 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9 1
La1.7.1 1
M.canetti;lineage4.9 1
spoligotype Counts
spoligotype Count
None 258
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SAMN02053783 MDR-TB lineage4.1.2.1 za
ERR2515361 Pre-XDR-TB lineage4.1.2.1 za
ERR9806949 Pre-XDR-TB lineage4.1.2.1 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR2515264 Pre-XDR-TB lineage4.1.2.1 za
SRR6046066 Other lineage4.9 None
SRR1180419 Pre-XDR-TB lineage4.1.2.1 None
ERR2027263 Other lineage4 None
ERR10748222 MDR-TB lineage4.1.2.1 None
SRR6789626 Other None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4769474 HR-TB lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR9971367 Pre-XDR-TB lineage4.1.2.1 None
SRR15014655 Other M.canetti;lineage1 None
SRR1196546 Other lineage4.9 None
SRR3675236 Other None
ERR176793 Other lineage4.1.1.1 None
ERR13289025 Pre-XDR-TB lineage4.1.2.1;lineage4.3.4.2.1 None
SRR1181171 Pre-XDR-TB lineage4.1.2.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR108471 HR-TB lineage4.9 None
ERR5987408 Pre-XDR-TB lineage4.1.2.1 None
ERR4800341 Other lineage3 None
ERR1063895 MDR-TB lineage4.1.2.1 None
SAMN02585972 Pre-XDR-TB lineage4.1.2.1 za
ERR3797064 Other La3;lineage4.9 None
SRR3675549 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR1181092 Pre-XDR-TB lineage4.1.2.1 None
SRR7496509 Other None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR13286118 Pre-XDR-TB lineage4.1.2.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR833038 Pre-XDR-TB lineage4.1.2.1 None
ERR4798262 HR-TB La1.2.BCG None
ERR9992907 XDR-TB lineage4.1.2.1 None
ERR3797070 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR8976096 MDR-TB lineage4.1.2.1 None
ERR9787197 Other None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR13289321 Pre-XDR-TB lineage4.1.2.1 None
ERR9786671 Other None
SRR833131 MDR-TB lineage4.1.2.1 None
ERR2515542 MDR-TB lineage4.1.2.1 za
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180276 Pre-XDR-TB lineage4.1.2.1 None
SRR19295647 Sensitive lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR10748163 Pre-XDR-TB lineage4.1.2.1 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675275 Other lineage4.9 None
SRR4034386 MDR-TB lineage4.1.2.1 za
ERR11252736 Other lineage4.9 None
SRR18213713 HR-TB None
SRR20969677 HR-TB La3;lineage2 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR1180181 Pre-XDR-TB lineage4.1.2.1 None
ERR9992678 XDR-TB lineage4.1.2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR833032 MDR-TB lineage4.1.2.1 None
ERR176741 Other lineage4.9 None
ERR9992692 Pre-XDR-TB lineage4.1.2.1 None
ERR067712 Sensitive lineage4.9 None
ERR11773741 Pre-XDR-TB lineage4.1.2.1 None
SRR6045526 Other lineage4.9 None
ERR9806800 MDR-TB lineage4.1.2.1 None
ERR3283031 Sensitive La3;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR9992674 XDR-TB lineage4.1.2.1 None
ERR9993086 XDR-TB lineage4.1.2.1 None
SRR6896411 MDR-TB lineage4.1.2.1 None
SRR6896523 Pre-XDR-TB lineage4.1.2.1 None
ERR10610164 MDR-TB lineage4.1.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR11775345 MDR-TB lineage4.1.2.1 None
ERR4831595 Pre-XDR-TB lineage4.1.2.1 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR2101482 MDR-TB lineage4.1.2.1 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR6458423 HR-TB lineage2.2.1 None
ERR9806812 MDR-TB lineage4.1.2.1 None
ERR11488403 MDR-TB lineage4.1.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR2516023 Pre-XDR-TB lineage4.1.2.1 za
ERR9117805 Other lineage4.3.2 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283021 HR-TB lineage4.9 None
SRR2101360 MDR-TB lineage4.1.2.1 None
SRR6982216 Pre-XDR-TB lineage4.1.2.1 None
ERR5918116 XDR-TB lineage4.1.2.1 za
ERR11488762 MDR-TB lineage4.1.2.1 None
ERR9993017 XDR-TB lineage4.1.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR3797047 MDR-TB lineage4.9 None
SRR1172817 Other La3 None
ERR473332 Other lineage4.9 None
ERR2516045 Pre-XDR-TB lineage4.1.2.1 za
SRR4034393 MDR-TB lineage4.1.2.1 None
ERR10610314 MDR-TB lineage4.1.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR10748250 XDR-TB lineage4.1.2.1 None
ERR4799513 HR-TB lineage2.2 None
SRR1184346 HR-TB lineage3.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR13286133 MDR-TB lineage4.1.2.1 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR9992854 XDR-TB lineage4.1.2.1 None
ERR7737700 MDR-TB lineage4.1.2.1 None
ERR9786843 Other None
SRR1184381 MDR-TB None
ERR11773716 Pre-XDR-TB lineage4.1.2.1 None
SRR28044873 Pre-XDR-TB lineage3 None
ERR13286066 Pre-XDR-TB lineage4.1.2.1 None
ERR3283055 HR-TB lineage4.9 None
SRR10315618 Pre-XDR-TB lineage4.1.2.1 None
ERR13289396 Pre-XDR-TB lineage4.1.2.1 None
SRR6045555 Other lineage4.9 None
SRR9971281 Pre-XDR-TB lineage4.1.2.1 None
SRR4034391 MDR-TB lineage4.1.2.1 None
SRR833194 MDR-TB lineage4.1.2.1 None
SRR3675572 Other None
SRR3675457 Other lineage4.9 None
ERR10610161 Pre-XDR-TB lineage4.1.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR13289284 MDR-TB lineage4.1.2.1 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR8975696 XDR-TB lineage4.1.2.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR13288870 MDR-TB lineage2.2.2;lineage4.1.2.1 None
SRR1181284 Pre-XDR-TB lineage4.1.2.1 None
SRR1196583 Other lineage4.9 None
SRR4034388 MDR-TB lineage4.1.2.1 za
SRR6785267 Other lineage2.2.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR2515135 Pre-XDR-TB lineage4.1.2.1 za
SRR6044875 Sensitive lineage4.9 None
SRR9971101 XDR-TB lineage4.1.2.1 None
ERR3283028 Other La3;lineage4 None
ERR9993049 Pre-XDR-TB lineage4.1.2.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2515667 Pre-XDR-TB lineage4.1.2.1 za
ERR2515982 MDR-TB lineage4.1.2.1 za
ERR9993148 Pre-XDR-TB lineage4.1.2.1 None
ERR2516017 MDR-TB lineage4.1.2.1 za
SRR1181279 Pre-XDR-TB lineage4.1.2.1 None
SRR10315617 Pre-XDR-TB lineage4.1.2.1 None
ERR3797069 Other lineage4.9 None
ERR7911682 Pre-XDR-TB lineage4.1.2.1 za
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR6046046 Other lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR7737696 Pre-XDR-TB lineage4.1.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR13289058 Pre-XDR-TB lineage4.1.2.1 None
SRR6045548 Sensitive lineage4.9 None
SRR9971183 Pre-XDR-TB lineage4.1.2.1 None
SRR4034389 MDR-TB lineage4.1.2.1 za
ERR2515739 Pre-XDR-TB lineage4.1.2.1 za
SRR4034387 MDR-TB lineage4.1.2.1 za
SRR26331632 MDR-TB lineage4.1.2.1 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR13288945 XDR-TB lineage4.1.2.1 None
SRR1184312 Other lineage2.2.1 None
SRR29055668 MDR-TB lineage4.1.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR13288920 XDR-TB lineage4.1.2.1 None
ERR7737652 MDR-TB lineage4.1.2.1 None
ERR2446566 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR6207282 MDR-TB lineage4.1.2.1 None
SRR6045347 Other lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SAMN02585961 Pre-XDR-TB lineage4.1.2.1 za
ERR9806894 Pre-XDR-TB lineage4.1.2.1 None
SRR1183124 Pre-XDR-TB lineage4.1.2.1 None
ERR4769450 Other lineage4.9 None
ERR9992701 XDR-TB lineage4.1.2.1 None
ERR2515583 MDR-TB lineage4.1.2.1 za
ERR2516091 Pre-XDR-TB lineage4.1.2.1 za
ERR3283011 Other La3;lineage4.9 None
ERR4809252 MDR-TB lineage4.1.2.1 za
SRR9971345 Pre-XDR-TB lineage4.1.2.1 None
ERR11488651 MDR-TB lineage4.1.2.1 None
ERR9992670 XDR-TB lineage4.1.2.1 None
ERR8025355 Pre-XDR-TB lineage4.1.2.1 None
SRR833075 MDR-TB lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
SRR9971236 Pre-XDR-TB lineage4.1.2.1 None
SRR832981 Pre-XDR-TB lineage4.1.2.1 None
SRR1172728 RR-TB La3 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117709 Other None
ERR11488567 MDR-TB lineage4.1.2.1 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR8975760 XDR-TB lineage4.1.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR9993034 MDR-TB lineage4.1.2.1 None
SRR4034390 MDR-TB lineage4.1.2.1 za
ERR13289376 MDR-TB lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR833128 Pre-XDR-TB lineage4.1.2.1 None
SRR7496472 Other lineage4.9 None
ERR2515588 Pre-XDR-TB lineage4.1.2.1 za
SAMN02053753 MDR-TB lineage4.1.2.1 za
ERR13289276 XDR-TB lineage4.1.2.1 None
SRR10315628 Pre-XDR-TB lineage4.1.2.1 None
ERR4769497 Other La1;lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
ERR9992645 XDR-TB lineage4.1.2.1 None
ERR9786604 Other None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR6046141 Other lineage4.9 None
ERR553053 MDR-TB lineage4.1.2.1 sz
SRR21732547 MDR-TB lineage4.1.2.1 None
SRR1172951 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1196768 MDR-TB None
SRR2101574 Pre-XDR-TB lineage4.1.2.1 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9992702 XDR-TB lineage4.1.2.1 None
ERR553216 MDR-TB lineage4.1.2.1 sz
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR9992693 Pre-XDR-TB lineage4.1.2.1 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR29056355 MDR-TB lineage4.1.2.1 None
SRR1792478 HR-TB La1.7.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045053 Other lineage4 None
ERR3797048 Other La3;lineage4.9 None
ERR2515199 Pre-XDR-TB lineage4.1.2.1 za
SRR9971071 Pre-XDR-TB lineage4.1.2.1 None
ERR3797028 HR-TB M.canetti;lineage4.9 None