Run ID: SRR6207282
Sample name:
Date: 02-08-2023 15:09:28
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage4.1.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.99 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761139 | p.His445Tyr | missense_variant | 1.0 | rifampicin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289031 | p.His71Tyr | missense_variant | 1.0 | pyrazinamide |
ald | 3086951 | c.133delA | frameshift_variant | 1.0 | cycloserine |
embA | 4243217 | c.-16C>G | upstream_gene_variant | 1.0 | ethambutol |
embB | 4247728 | p.Glu405Asp | missense_variant | 1.0 | ethambutol |
gid | 4407802 | p.Ala134Glu | missense_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575447 | p.Ser34Pro | missense_variant | 0.17 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576089 | c.750_769delTGATCGGCGCGCGGCCCGGG | frameshift_variant | 0.13 |
ccsA | 619876 | c.-15C>G | upstream_gene_variant | 0.11 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 761477 | c.1671C>A | synonymous_variant | 0.13 |
rpoB | 761721 | p.Glu639Lys | missense_variant | 0.1 |
rpoB | 762577 | c.2774_2780dupTTTTGGA | frameshift_variant | 0.25 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406813 | c.528T>C | synonymous_variant | 1.0 |
Rv1258c | 1406898 | p.Ala148Glu | missense_variant | 0.1 |
embR | 1417267 | c.80delC | frameshift_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.21 |
inhA | 1674490 | p.Phe97Leu | missense_variant | 0.22 |
rpsA | 1834273 | c.732C>T | synonymous_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918617 | p.Lys226Asn | missense_variant | 0.12 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.44 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.29 |
PPE35 | 2170298 | c.315A>G | synonymous_variant | 0.17 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
pepQ | 2860008 | c.411C>T | synonymous_variant | 0.15 |
ald | 3086646 | c.-174G>T | upstream_gene_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087088 | p.Ile90Asn | missense_variant | 0.11 |
ald | 3087102 | c.283T>C | synonymous_variant | 0.11 |
fbiD | 3339175 | p.Ala20Ser | missense_variant | 0.14 |
Rv3083 | 3448808 | p.Leu102Pro | missense_variant | 0.17 |
Rv3083 | 3449458 | p.Asp319Asn | missense_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568513 | p.Ala56Val | missense_variant | 0.1 |
fbiB | 3642018 | c.485_489delATGCC | frameshift_variant | 0.33 |
fbiB | 3642027 | c.494delT | frameshift_variant | 0.33 |
fbiB | 3642031 | p.Gly166Ala | missense_variant | 0.33 |
alr | 3840259 | p.Tyr388Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4247068 | c.555T>C | synonymous_variant | 0.18 |
embB | 4247738 | p.Ala409Pro | missense_variant | 1.0 |
embB | 4249488 | p.Leu992Ser | missense_variant | 0.15 |
ethA | 4326842 | p.Tyr211Ser | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |