Rv1258c - c.528T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
51 MDR-TB
62 Pre-XDR-TB
19 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 128 |
| lineage4.1.2.1;lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.2.2;lineage4.1.2.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 132 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1181171 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9971236 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9993034 | MDR-TB | lineage4.1.2.1 | None | SRR6982216 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11488762 | MDR-TB | lineage4.1.2.1 | None | SRR4034393 | MDR-TB | lineage4.1.2.1 | None | SRR9971101 | XDR-TB | lineage4.1.2.1 | None | ERR9806802 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR833128 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR26331632 | MDR-TB | lineage4.1.2.1 | None | SRR833038 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR4034386 | MDR-TB | lineage4.1.2.1 | za | ERR11773716 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4809252 | MDR-TB | lineage4.1.2.1 | za | ERR7911682 | Pre-XDR-TB | lineage4.1.2.1 | za | SAMN02053753 | MDR-TB | lineage4.1.2.1 | za | ERR2515982 | MDR-TB | lineage4.1.2.1 | za | ERR2515542 | MDR-TB | lineage4.1.2.1 | za | ERR2515583 | MDR-TB | lineage4.1.2.1 | za | ERR2516017 | MDR-TB | lineage4.1.2.1 | za | ERR2515588 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2515667 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2516023 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2515135 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2516045 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR553053 | MDR-TB | lineage4.1.2.1 | sz | SRR833194 | MDR-TB | lineage4.1.2.1 | None | SRR21732547 | MDR-TB | lineage4.1.2.1 | None | SAMN02585961 | Pre-XDR-TB | lineage4.1.2.1 | za | SAMN02585972 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR13289025 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4.2.1 | None | ERR13289347 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13289321 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13289396 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13289058 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13289376 | MDR-TB | lineage4.1.2.1 | None | ERR13289282 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13286066 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13286133 | MDR-TB | lineage4.1.2.1 | None | ERR9992670 | XDR-TB | lineage4.1.2.1 | None | ERR13286038 | XDR-TB | lineage4.1.2.1 | None | ERR9992693 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9993148 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9992701 | XDR-TB | lineage4.1.2.1 | None | ERR9992702 | XDR-TB | lineage4.1.2.1 | None | ERR8975760 | XDR-TB | lineage4.1.2.1 | None | ERR9992678 | XDR-TB | lineage4.1.2.1 | None | ERR2515264 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR5918116 | XDR-TB | lineage4.1.2.1 | za | ERR7737696 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9992692 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9992674 | XDR-TB | lineage4.1.2.1 | None | SRR6207282 | MDR-TB | lineage4.1.2.1 | None | ERR10748222 | MDR-TB | lineage4.1.2.1 | None | ERR11775345 | MDR-TB | lineage4.1.2.1 | None | SRR29055668 | MDR-TB | lineage4.1.2.1 | None | SRR2101360 | MDR-TB | lineage4.1.2.1 | None | SRR29056355 | MDR-TB | lineage4.1.2.1 | None | ERR9993017 | XDR-TB | lineage4.1.2.1 | None | ERR11488567 | MDR-TB | lineage4.1.2.1 | None | SRR1181092 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR4034389 | MDR-TB | lineage4.1.2.1 | za | SRR4034388 | MDR-TB | lineage4.1.2.1 | za | SRR4034390 | MDR-TB | lineage4.1.2.1 | za | ERR9992907 | XDR-TB | lineage4.1.2.1 | None | ERR8975696 | XDR-TB | lineage4.1.2.1 | None | ERR9992645 | XDR-TB | lineage4.1.2.1 | None | SRR10315618 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1180276 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR2101574 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR553216 | MDR-TB | lineage4.1.2.1 | sz | ERR10610161 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1180181 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13286118 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13289284 | MDR-TB | lineage4.1.2.1 | None | ERR2515361 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2516091 | Pre-XDR-TB | lineage4.1.2.1 | za | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR1181279 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10315617 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11773741 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR7737652 | MDR-TB | lineage4.1.2.1 | None | SRR29055908 | MDR-TB | lineage4.1.2.1 | None | ERR9993086 | XDR-TB | lineage4.1.2.1 | None | ERR9806894 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10610164 | MDR-TB | lineage4.1.2.1 | None | SRR6896197 | MDR-TB | lineage4.1.2.1 | None | ERR4831595 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806812 | MDR-TB | lineage4.1.2.1 | None | ERR11488403 | MDR-TB | lineage4.1.2.1 | None | ERR11488651 | MDR-TB | lineage4.1.2.1 | None | ERR13288945 | XDR-TB | lineage4.1.2.1 | None | ERR5987408 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR832981 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1063895 | MDR-TB | lineage4.1.2.1 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | ERR10610314 | MDR-TB | lineage4.1.2.1 | None | SRR10315629 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29056348 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10748250 | XDR-TB | lineage4.1.2.1 | None | SRR4034387 | MDR-TB | lineage4.1.2.1 | za | ERR7737700 | MDR-TB | lineage4.1.2.1 | None | SRR10315628 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR833131 | MDR-TB | lineage4.1.2.1 | None | ERR8976096 | MDR-TB | lineage4.1.2.1 | None | SRR9971281 | Pre-XDR-TB | lineage4.1.2.1 | None | SAMN02053783 | MDR-TB | lineage4.1.2.1 | za | ERR10748163 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1181284 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9992854 | XDR-TB | lineage4.1.2.1 | None | ERR9993049 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13289276 | XDR-TB | lineage4.1.2.1 | None | ERR13289265 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2515199 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2515739 | Pre-XDR-TB | lineage4.1.2.1 | za | SRR833032 | MDR-TB | lineage4.1.2.1 | None | SRR9971071 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9971183 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806949 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806800 | MDR-TB | lineage4.1.2.1 | None | SRR1180419 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6896411 | MDR-TB | lineage4.1.2.1 | None | SRR6896523 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1183124 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13288920 | XDR-TB | lineage4.1.2.1 | None | SRR9971367 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR2101482 | MDR-TB | lineage4.1.2.1 | None | ERR13288870 | MDR-TB | lineage2.2.2;lineage4.1.2.1 | None | SRR9971345 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR8025355 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR833075 | MDR-TB | lineage4.1.2.1 | None |
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