Rv3457c - c.-455G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
58 Sensitive
3 RR-TB
19 HR-TB
9 MDR-TB
3 Pre-XDR-TB
2 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| 17 | |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage2.2.1 | 12 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| M.canetti | 58 |
| lineage4.9 | 25 |
| lineage6.1.1 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4.7 | 3 |
| lineage4.3.4.2 | 2 |
| lineage4.9;lineage6.3 | 7 |
| La3;lineage4.9 | 2 |
| La3 | 2 |
| lineage1.1.2 | 4 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.1.1 | 2 |
| lineage2.1;lineage4.9 | 8 |
| La3;lineage2.2.1 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;M.canetti | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage3.1;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage3 | 3 |
| lineage2.2.2;lineage4 | 1 |
| lineage6.3.1 | 1 |
| lineage4 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 192 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR266106 | Sensitive | M.canetti | None | ERR4811075 | Other | None | ERR4811142 | RR-TB | None | SRR28119753 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR3675236 | Other | None | SRR29096900 | Sensitive | lineage4.3.4.2 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR18289196 | Sensitive | M.canetti | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR266120 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | ERR266109 | Sensitive | M.canetti | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR28119777 | Other | lineage4.9 | None | SRR10177258 | Other | M.canetti | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | ERR552305 | Sensitive | M.canetti | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | SRR7496509 | Other | None | SRR5818676 | Other | M.canetti | dj | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR24061598 | Sensitive | M.canetti | None | SRR29050928 | Other | lineage4.9 | None | SRR10177260 | Other | M.canetti | None | SRR7496472 | Other | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SAMEA6086630 | Sensitive | M.canetti | None | SAMEA2533665 | Sensitive | M.canetti | None | SAMEA2534556 | Sensitive | M.canetti | None | SRR3675221 | Other | lineage4.9 | None | SRR1173118 | Other | lineage2.2.1 | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3597003 | Sensitive | M.canetti | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR551055 | Sensitive | M.canetti | None | ERR9125475 | Sensitive | M.canetti | None | ERR9125480 | Sensitive | M.canetti | None | SRR1169194 | Other | lineage4.9 | None | SRR5818614 | Sensitive | M.canetti | dj | ERR313116 | Sensitive | M.canetti | None | ERR313114 | Sensitive | M.canetti | None | SRR7496517 | Other | None | ERR313117 | Sensitive | M.canetti | None | ERR4815361 | Other | M.canetti | None | ERR313113 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | ERR551056 | Sensitive | M.canetti | None | SRR1196494 | MDR-TB | None | SRR6650709 | Sensitive | M.canetti | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | SRR6789626 | Other | None | ERR4797201 | Other | None | ERR4816999 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR4798504 | RR-TB | lineage3 | None | ERR9786515 | Other | lineage4.1.2.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR29093909 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3283044 | Other | lineage4 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR9117709 | Other | None | SRR10177263 | Sensitive | M.canetti | None | SRR3675549 | Other | lineage4.9 | None | SRR5818661 | Other | M.canetti | dj | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | ERR3797070 | Other | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR10177262 | Sensitive | M.canetti | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR28044634 | Other | lineage3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5818668 | Sensitive | M.canetti | dj | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR7496523 | Other | lineage4.7 | None | ERR266121 | Sensitive | M.canetti | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR28046307 | Sensitive | lineage1.1.2 | None | SRR3675457 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | ERR3597005 | Sensitive | M.canetti | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR266123 | Sensitive | M.canetti | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR28045990 | Sensitive | lineage1.1.2 | None | SRR3675275 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR5818567 | Other | M.canetti | dj | ERR4815604 | Other | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR266107 | Other | M.canetti | None | ERR313115 | Sensitive | M.canetti | None | ERR3597001 | Sensitive | M.canetti | None | ERR3597002 | Sensitive | M.canetti | None | ERR3597007 | Sensitive | M.canetti | None | SRR28044839 | Sensitive | lineage1.1.2 | None | ERR4817181 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR4821046 | Sensitive | M.canetti | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR551057 | Sensitive | M.canetti | None | ERR552307 | Sensitive | M.canetti | None | ERR552304 | Sensitive | M.canetti | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR10177261 | Sensitive | M.canetti | None | SRR22179528 | Sensitive | M.canetti | None | SRR16058668 | Sensitive | M.canetti | None | SRR16058674 | Sensitive | M.canetti | None | ERR266110 | Other | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | SRR29056248 | Sensitive | M.canetti | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR10177259 | Other | M.canetti | None | SRR1184312 | Other | lineage2.2.1 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR29126968 | Sensitive | lineage4.7 | None | ERR2027263 | Other | lineage4 | None | SRR29016901 | Other | La3;lineage4.9 | None |
|---|
