TB-Profiler result

Run: ERR2514390

Summary

Run ID: ERR2514390

Sample name:

Date: 31-03-2023 20:18:40

Number of reads: 2134244

Percentage reads mapped: 80.83

Strain: lineage4.9;lineage3.1.2.1

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 0.89
lineage4 Euro-American LAM;T;S;X;H None 0.09
lineage4.9 Euro-American (H37Rv-like) T1 None 0.06
lineage3.1 East-African-Indian Non-CAS1-Delhi RD750 0.16
lineage3.1.2 East-African-Indian CAS;CAS2 RD750 0.09
lineage3.1.2.1 East-African-Indian CAS2 RD750 0.13
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6670 c.-632G>C upstream_gene_variant 0.15
gyrA 6676 c.-626T>G upstream_gene_variant 0.15
gyrA 6700 c.-602T>C upstream_gene_variant 0.15
gyrA 6703 c.-599G>C upstream_gene_variant 0.15
gyrA 6949 c.-353A>G upstream_gene_variant 0.15
gyrB 7124 p.Ser629Thr missense_variant 0.15
gyrA 7141 c.-161T>C upstream_gene_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 0.88
gyrA 7451 c.150C>G synonymous_variant 0.17
gyrA 7457 c.156T>C synonymous_variant 0.15
gyrA 7475 c.174A>G synonymous_variant 0.21
gyrA 7480 p.Phe60Tyr missense_variant 0.2
gyrA 7484 c.183T>C synonymous_variant 0.19
gyrA 7514 c.213C>G synonymous_variant 0.16
gyrA 7523 c.222C>A synonymous_variant 0.15
gyrA 7547 c.246C>T synonymous_variant 0.13
gyrA 7562 c.261C>T synonymous_variant 0.16
gyrA 7571 c.270G>C synonymous_variant 0.15
gyrA 7585 p.Ser95Thr missense_variant 0.94
gyrA 7637 c.336C>G synonymous_variant 0.17
gyrA 7658 c.357A>G synonymous_variant 0.17
gyrA 7664 c.363T>C synonymous_variant 0.18
gyrA 7670 c.369A>G synonymous_variant 0.18
gyrA 7676 c.375G>C synonymous_variant 0.17
gyrA 7683 c.382_384delAGGinsCGC synonymous_variant 0.17
gyrA 7694 c.393A>G synonymous_variant 0.16
gyrA 7697 c.396C>A synonymous_variant 0.14
gyrA 8543 c.1242C>G synonymous_variant 0.16
gyrA 8546 c.1245T>C synonymous_variant 0.16
gyrA 8553 c.1252C>A synonymous_variant 0.15
gyrA 8561 c.1260A>C synonymous_variant 0.14
gyrA 8772 p.Gly491Ser missense_variant 0.79
gyrA 8786 c.1485T>C synonymous_variant 0.14
gyrA 8807 c.1506C>T synonymous_variant 0.13
gyrA 8810 c.1509A>G synonymous_variant 0.15
gyrA 8816 c.1515C>G synonymous_variant 0.15
gyrA 8818 p.Ser506Asn missense_variant 0.16
gyrA 8828 c.1527T>C synonymous_variant 0.17
gyrA 8829 c.1528T>C synonymous_variant 0.17
gyrA 8852 c.1551T>C synonymous_variant 0.2
gyrA 8867 c.1566A>G synonymous_variant 0.15
gyrA 8870 c.1569G>C synonymous_variant 0.15
gyrA 8891 c.1590G>A synonymous_variant 0.16
gyrA 8897 c.1596T>C synonymous_variant 0.15
gyrA 9304 p.Gly668Asp missense_variant 0.84
fgd1 491742 c.960T>C synonymous_variant 0.9
mshA 575283 c.-65C>G upstream_gene_variant 0.78
mshA 575659 c.312A>G synonymous_variant 0.14
mshA 575662 c.315C>G synonymous_variant 0.14
mshA 575665 c.318G>A synonymous_variant 0.15
mshA 575674 c.327G>C synonymous_variant 0.14
mshA 575830 c.483C>G synonymous_variant 0.15
mshA 575833 c.486C>G synonymous_variant 0.16
mshA 575845 c.498C>T synonymous_variant 0.16
ccsA 620362 p.Ala158Thr missense_variant 0.16
ccsA 620682 c.792G>A synonymous_variant 0.14
ccsA 620688 c.798G>C synonymous_variant 0.19
ccsA 620710 p.Val274Ile missense_variant 0.21
ccsA 620718 c.828G>C synonymous_variant 0.18
ccsA 620721 c.831G>C synonymous_variant 0.17
ccsA 620733 c.843G>C synonymous_variant 0.17
ccsA 620734 c.844C>A synonymous_variant 0.17
ccsA 620739 c.849A>G synonymous_variant 0.17
ccsA 620742 c.852G>C synonymous_variant 0.17
ccsA 620745 c.855G>C synonymous_variant 0.17
ccsA 620748 c.858T>A synonymous_variant 0.19
ccsA 620763 c.873G>A synonymous_variant 0.21
ccsA 620769 c.879C>G synonymous_variant 0.2
ccsA 620778 c.888T>C synonymous_variant 0.17
ccsA 620784 c.894C>G synonymous_variant 0.16
rpoB 759746 c.-61C>T upstream_gene_variant 0.97
rpoB 760181 c.375T>C synonymous_variant 0.17
rpoB 760184 c.378A>G synonymous_variant 0.17
rpoB 760196 c.390C>G synonymous_variant 0.16
rpoB 760223 c.417T>C synonymous_variant 0.19
rpoB 760235 c.429T>C synonymous_variant 0.17
rpoB 760283 c.477G>C synonymous_variant 0.15
rpoB 760298 c.492G>C synonymous_variant 0.15
rpoB 760307 c.501T>C synonymous_variant 0.15
rpoB 760310 c.504G>C synonymous_variant 0.15
rpoB 760328 c.522G>C synonymous_variant 0.15
rpoB 760340 c.534G>T synonymous_variant 0.14
rpoB 760982 c.1176G>C synonymous_variant 0.16
rpoB 760985 c.1179G>C synonymous_variant 0.16
rpoB 760991 c.1185G>C synonymous_variant 0.17
rpoB 761006 c.1200C>G synonymous_variant 0.16
rpoB 761021 c.1215G>C synonymous_variant 0.15
rpoB 761027 c.1221A>G synonymous_variant 0.15
rpoB 761036 c.1230G>C synonymous_variant 0.2
rpoB 761037 c.1231T>C synonymous_variant 0.21
rpoB 761057 c.1251G>C synonymous_variant 0.22
rpoB 761102 c.1296A>G synonymous_variant 0.17
rpoB 762185 c.2379G>C synonymous_variant 0.14
rpoB 762206 c.2400C>G synonymous_variant 0.17
rpoB 762233 c.2427G>C synonymous_variant 0.15
rpoC 762434 c.-936T>G upstream_gene_variant 0.85
rpoC 762926 c.-444C>T upstream_gene_variant 0.17
rpoC 762929 c.-441G>C upstream_gene_variant 0.17
rpoC 763031 c.-339T>C upstream_gene_variant 0.95
rpoC 763115 c.-255T>C upstream_gene_variant 0.17
rpoC 763136 c.-234C>T upstream_gene_variant 0.14
rpoC 763486 c.117T>G synonymous_variant 0.14
rpoC 763594 c.225C>T synonymous_variant 0.14
rpoC 763741 c.372C>T synonymous_variant 0.14
rpoC 763765 c.396T>C synonymous_variant 0.18
rpoC 763774 c.405G>C synonymous_variant 0.18
rpoC 763807 c.438T>C synonymous_variant 0.17
rpoC 763816 c.447C>G synonymous_variant 0.17
rpoC 763987 c.618C>T synonymous_variant 0.14
rpoC 764002 c.633C>G synonymous_variant 0.15
rpoC 764005 c.636G>C synonymous_variant 0.15
rpoC 764041 p.Ser224Arg missense_variant 0.14
rpoC 764044 c.675T>C synonymous_variant 0.15
rpoC 764059 c.690G>T synonymous_variant 0.13
rpoC 764098 c.729A>G synonymous_variant 0.14
rpoC 764102 p.Val245Ile missense_variant 0.14
rpoC 764112 p.Tyr248Phe missense_variant 0.16
rpoC 764116 c.747C>T synonymous_variant 0.15
rpoC 764338 c.969G>A synonymous_variant 0.2
rpoC 764353 c.984G>C synonymous_variant 0.2
rpoC 764365 c.996C>T synonymous_variant 0.21
rpoC 764380 c.1011G>C synonymous_variant 0.19
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.16
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.16
rpoC 764405 c.1036A>C synonymous_variant 0.19
rpoC 764419 c.1050C>G synonymous_variant 0.21
rpoC 764428 c.1059G>C synonymous_variant 0.2
rpoC 764431 c.1062G>C synonymous_variant 0.21
rpoC 764434 c.1065A>G synonymous_variant 0.21
rpoC 764446 c.1077T>C synonymous_variant 0.19
rpoC 764449 c.1080G>C synonymous_variant 0.18
rpoC 764452 c.1083T>C synonymous_variant 0.18
rpoC 764458 c.1089G>C synonymous_variant 0.19
rpoC 764461 c.1092A>G synonymous_variant 0.22
rpoC 764497 c.1128A>G synonymous_variant 0.16
rpoC 764527 c.1158C>T synonymous_variant 0.14
rpoC 764554 c.1185C>T synonymous_variant 0.15
rpoC 764566 c.1197C>G synonymous_variant 0.16
rpoC 764575 c.1206T>G synonymous_variant 0.15
rpoC 764581 c.1212T>C synonymous_variant 0.16
rpoC 764593 c.1224C>T synonymous_variant 0.16
rpoC 764611 c.1242G>T synonymous_variant 0.19
rpoC 764650 c.1281G>C synonymous_variant 0.2
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.2
rpoC 764752 c.1383G>C synonymous_variant 0.15
rpoC 765019 c.1650A>G synonymous_variant 0.18
rpoC 765034 c.1665T>C synonymous_variant 0.16
rpoC 765040 c.1671T>C synonymous_variant 0.15
rpoC 765053 p.Ser562Thr missense_variant 0.13
rpoC 765383 p.Met672Leu missense_variant 0.17
rpoC 765404 p.Leu679Val missense_variant 0.22
rpoC 765409 c.2040T>C synonymous_variant 0.22
rpoC 765421 c.2052C>G synonymous_variant 0.24
rpoC 765478 c.2109T>C synonymous_variant 0.2
rpoC 765499 c.2130C>G synonymous_variant 0.22
rpoC 765529 c.2160C>T synonymous_variant 0.23
rpoC 765541 c.2172C>G synonymous_variant 0.23
rpoC 765553 c.2184C>T synonymous_variant 0.21
rpoC 765556 c.2187G>C synonymous_variant 0.21
rpoC 765559 c.2190G>C synonymous_variant 0.17
rpoC 765580 c.2211G>C synonymous_variant 0.19
rpoC 765613 p.His748Gln missense_variant 0.19
rpoC 765625 c.2256C>G synonymous_variant 0.15
rpoC 765631 p.Asp754Glu missense_variant 0.17
rpoC 765700 c.2331T>C synonymous_variant 0.18
rpoC 766027 c.2658G>C synonymous_variant 0.15
rpoC 766030 c.2661C>G synonymous_variant 0.15
rpoC 766390 c.3021C>T synonymous_variant 0.14
rpoC 766408 c.3039C>G synonymous_variant 0.17
rpoC 766411 c.3042C>G synonymous_variant 0.17
rpoC 766426 c.3057C>T synonymous_variant 0.17
rpoC 766447 c.3078T>C synonymous_variant 0.17
rpoC 766607 p.Ile1080Leu missense_variant 0.16
rpoC 766630 c.3261G>C synonymous_variant 0.15
rpoC 766657 c.3288A>G synonymous_variant 0.19
rpoC 766660 c.3291G>C synonymous_variant 0.19
rpoC 766672 c.3303T>C synonymous_variant 0.19
rpoC 766673 p.Gly1102Asn missense_variant 0.18
rpoC 766726 c.3357T>C synonymous_variant 0.22
rpoC 766738 c.3369G>C synonymous_variant 0.22
rpoC 766765 c.3396A>C synonymous_variant 0.2
rpoC 766774 c.3405T>C synonymous_variant 0.21
rpoC 766801 c.3432C>G synonymous_variant 0.2
rpoC 766804 c.3435A>G synonymous_variant 0.22
rpoC 766861 c.3492G>C synonymous_variant 0.21
rpoC 766864 c.3495G>C synonymous_variant 0.2
rpoC 766876 c.3507C>T synonymous_variant 0.22
rpoC 766882 c.3513C>T synonymous_variant 0.22
rpoC 766894 c.3525T>C synonymous_variant 0.22
rpoC 766895 c.3526T>C synonymous_variant 0.22
rpoC 766900 c.3531T>C synonymous_variant 0.21
rpoC 766933 c.3564A>G synonymous_variant 0.17
rpoC 766945 c.3576A>G synonymous_variant 0.15
rpoC 766972 c.3603G>C synonymous_variant 0.17
rpoC 766996 c.3627C>T synonymous_variant 0.19
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.15
rpoC 767014 c.3645G>C synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 0.93
mmpL5 776100 p.Thr794Ile missense_variant 0.91
rpsL 781395 c.-165T>C upstream_gene_variant 0.96
rpsL 781700 c.141G>C synonymous_variant 0.16
rpsL 781703 c.144G>T synonymous_variant 0.15
rpsL 781772 c.213C>A synonymous_variant 0.15
rpsL 781808 c.249C>T synonymous_variant 0.15
rpsL 781811 c.252C>T synonymous_variant 0.14
rpsL 781841 c.282C>G synonymous_variant 0.14
rpsL 781877 c.318T>C synonymous_variant 0.15
rplC 800693 c.-116A>G upstream_gene_variant 0.16
fbiC 1303695 c.765T>C synonymous_variant 0.15
fbiC 1303704 c.774T>C synonymous_variant 0.14
fbiC 1303728 c.798G>A synonymous_variant 0.14
fbiC 1303737 c.807G>A synonymous_variant 0.15
fbiC 1303746 c.816T>C synonymous_variant 0.15
fbiC 1303752 c.822A>G synonymous_variant 0.15
fbiC 1303755 c.825T>C synonymous_variant 0.14
fbiC 1303761 c.831T>C synonymous_variant 0.15
fbiC 1303789 p.Ile287Val missense_variant 0.14
fbiC 1303797 c.867A>G synonymous_variant 0.14
fbiC 1303860 c.930A>C synonymous_variant 0.16
fbiC 1304613 c.1683T>C synonymous_variant 0.21
fbiC 1304634 c.1704C>G synonymous_variant 0.27
fbiC 1304640 c.1710A>C synonymous_variant 0.27
fbiC 1304646 c.1716T>C synonymous_variant 0.28
fbiC 1304658 c.1728C>G synonymous_variant 0.27
fbiC 1304661 c.1731C>T synonymous_variant 0.26
fbiC 1304670 c.1740G>C synonymous_variant 0.22
fbiC 1304671 p.Val581Thr missense_variant 0.22
fbiC 1304675 p.Gly582Asp missense_variant 0.22
fbiC 1304691 c.1761G>C synonymous_variant 0.21
fbiC 1304694 c.1764A>C synonymous_variant 0.21
fbiC 1304703 c.1773C>G synonymous_variant 0.21
fbiC 1304711 p.Ala594Glu missense_variant 0.18
fbiC 1304715 c.1785G>C synonymous_variant 0.18
fbiC 1304724 c.1794A>G synonymous_variant 0.21
fbiC 1304727 c.1797A>G synonymous_variant 0.22
fbiC 1304739 c.1809C>T synonymous_variant 0.2
fbiC 1304742 c.1812T>C synonymous_variant 0.2
fbiC 1304757 c.1827A>G synonymous_variant 0.19
fbiC 1304778 c.1848T>C synonymous_variant 0.17
fbiC 1304784 c.1854T>C synonymous_variant 0.15
fbiC 1304787 c.1857T>G synonymous_variant 0.16
fbiC 1304808 c.1878C>G synonymous_variant 0.21
fbiC 1304811 c.1881C>G synonymous_variant 0.21
fbiC 1304817 c.1887T>C synonymous_variant 0.26
fbiC 1304829 c.1899T>C synonymous_variant 0.32
fbiC 1304832 c.1902C>T synonymous_variant 0.32
fbiC 1304856 c.1926C>G synonymous_variant 0.75
fbiC 1304862 c.1932G>A synonymous_variant 0.42
fbiC 1304869 c.1939C>T synonymous_variant 0.38
fbiC 1304875 p.Ile649Val missense_variant 0.35
fbiC 1304883 p.Glu651Asp missense_variant 0.32
fbiC 1304891 p.Ile654Thr missense_variant 0.31
fbiC 1304893 p.Gly655Ser missense_variant 0.32
fbiC 1304907 c.1977C>G synonymous_variant 0.36
fbiC 1304910 c.1980G>C synonymous_variant 0.36
fbiC 1304916 c.1986T>C synonymous_variant 0.38
fbiC 1304928 c.1998T>C synonymous_variant 0.34
fbiC 1304937 c.2007G>C synonymous_variant 0.31
fbiC 1304958 c.2028T>G synonymous_variant 0.28
fbiC 1304983 c.2053C>T synonymous_variant 0.25
fbiC 1304994 c.2064A>G synonymous_variant 0.22
fbiC 1304995 p.Leu689Met missense_variant 0.22
fbiC 1305006 c.2076A>G synonymous_variant 0.22
fbiC 1305012 c.2082G>C synonymous_variant 0.21
fbiC 1305015 c.2085G>C synonymous_variant 0.21
fbiC 1305021 c.2091C>G synonymous_variant 0.17
fbiC 1305030 c.2100G>C synonymous_variant 0.15
embR 1416814 c.534G>A synonymous_variant 0.72
atpE 1461132 p.Val30Ile missense_variant 0.16
atpE 1461149 c.105T>G synonymous_variant 0.15
atpE 1461150 p.Ile36Val missense_variant 0.16
atpE 1461158 c.114T>G synonymous_variant 0.16
atpE 1461159 p.Val39Ile missense_variant 0.16
atpE 1461185 c.141G>T synonymous_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
fabG1 1673615 p.Glu59Val missense_variant 0.16
inhA 1673619 c.-583T>C upstream_gene_variant 0.16
fabG1 1673633 p.Ser65Asn missense_variant 0.17
inhA 1673679 c.-523T>C upstream_gene_variant 0.15
rpsA 1833667 c.126C>G synonymous_variant 0.14
rpsA 1833724 c.183C>G synonymous_variant 0.15
rpsA 1833787 c.246C>G synonymous_variant 0.15
rpsA 1833790 c.249T>C synonymous_variant 0.16
rpsA 1833802 c.261A>G synonymous_variant 0.18
rpsA 1833811 c.270G>T synonymous_variant 0.17
rpsA 1833838 c.297G>C synonymous_variant 0.15
rpsA 1833847 c.306C>G synonymous_variant 0.17
rpsA 1833856 c.315A>G synonymous_variant 0.18
rpsA 1833874 c.333T>C synonymous_variant 0.19
rpsA 1833886 c.345C>G synonymous_variant 0.24
rpsA 1833928 c.387G>C synonymous_variant 0.24
rpsA 1833940 c.399C>G synonymous_variant 0.26
rpsA 1833971 c.430C>T synonymous_variant 0.2
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1834000 c.459G>C synonymous_variant 0.17
rpsA 1834021 c.480C>T synonymous_variant 0.14
rpsA 1834249 c.708T>C synonymous_variant 0.15
rpsA 1834303 c.762T>C synonymous_variant 0.23
rpsA 1834306 c.765T>C synonymous_variant 0.23
rpsA 1834348 c.807T>C synonymous_variant 0.17
rpsA 1834366 c.825A>G synonymous_variant 0.16
rpsA 1834396 c.855G>C synonymous_variant 0.17
rpsA 1834411 c.870T>C synonymous_variant 0.17
rpsA 1834417 c.876G>C synonymous_variant 0.16
rpsA 1834654 p.Glu371Asp missense_variant 0.17
rpsA 1834690 c.1149T>C synonymous_variant 0.14
rpsA 1834732 c.1191T>C synonymous_variant 0.17
rpsA 1834733 p.Ala398Ser missense_variant 0.16
rpsA 1834738 c.1197A>G synonymous_variant 0.16
rpsA 1834753 c.1212T>C synonymous_variant 0.14
rpsA 1834765 p.Glu408Asp missense_variant 0.16
rpsA 1834775 p.Ala412Thr missense_variant 0.15
rpsA 1834780 c.1239A>G synonymous_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 0.87
tlyA 1918036 p.Arg33Ser missense_variant 0.19
tlyA 1918048 p.Leu37Met missense_variant 0.19
tlyA 1918053 c.114G>C synonymous_variant 0.16
katG 2154724 p.Arg463Leu missense_variant 0.87
PPE35 2167926 p.Leu896Ser missense_variant 0.91
PPE35 2168604 p.Pro670Leu missense_variant 0.17
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.91
pncA 2289047 c.195C>T synonymous_variant 0.79
pncA 2289365 c.-125delC upstream_gene_variant 0.92
kasA 2518624 c.510C>G synonymous_variant 0.19
kasA 2518639 c.525G>C synonymous_variant 0.21
kasA 2518657 c.543G>C synonymous_variant 0.19
kasA 2518672 c.558G>C synonymous_variant 0.17
kasA 2518678 c.564C>T synonymous_variant 0.17
kasA 2518684 c.570C>G synonymous_variant 0.16
kasA 2518744 c.630C>T synonymous_variant 0.2
kasA 2518747 c.633C>G synonymous_variant 0.19
ahpC 2726105 c.-88G>A upstream_gene_variant 0.94
thyX 3067274 c.672C>G synonymous_variant 0.17
thyX 3067277 c.669C>G synonymous_variant 0.16
thyX 3067281 p.Val222Ala missense_variant 0.16
thyX 3067284 p.Ala221Gly missense_variant 0.16
thyX 3067286 c.660C>G synonymous_variant 0.16
thyX 3067289 c.657C>G synonymous_variant 0.16
thyX 3067292 c.654G>A synonymous_variant 0.16
thyX 3067295 c.651C>T synonymous_variant 0.16
thyX 3067325 c.621A>G synonymous_variant 0.16
thyX 3067349 c.597G>C synonymous_variant 0.16
thyX 3067355 c.591A>C synonymous_variant 0.17
thyX 3067367 c.579G>C synonymous_variant 0.19
thyX 3067373 c.573C>G synonymous_variant 0.2
thyX 3067376 c.570G>A synonymous_variant 0.2
thyX 3067391 c.555G>C synonymous_variant 0.21
thyX 3067394 c.552G>C synonymous_variant 0.23
thyX 3067439 c.507A>G synonymous_variant 0.2
thyX 3067445 c.501C>G synonymous_variant 0.2
thyX 3067457 c.489C>G synonymous_variant 0.21
thyX 3067465 p.Ile161Val missense_variant 0.21
thyX 3067475 c.471A>G synonymous_variant 0.21
thyX 3067490 c.456C>G synonymous_variant 0.16
thyX 3067493 c.453A>G synonymous_variant 0.17
thyX 3067515 p.Ser144Thr missense_variant 0.16
thyX 3067531 p.Ala139Thr missense_variant 0.14
thyX 3067545 p.Glu134Ala missense_variant 0.14
thyX 3067619 c.327A>C synonymous_variant 0.13
thyA 3073892 c.580T>C synonymous_variant 0.18
thyA 3073898 p.Ala192Ser missense_variant 0.18
thyA 3073917 c.555C>G synonymous_variant 0.17
thyA 3073920 c.552C>G synonymous_variant 0.17
thyA 3073925 c.547T>C synonymous_variant 0.17
thyA 3073929 c.543T>C synonymous_variant 0.18
ald 3086788 c.-32T>C upstream_gene_variant 0.92
fprA 3473996 c.-11_-10insA upstream_gene_variant 0.96
whiB7 3568857 c.-178C>T upstream_gene_variant 0.74
rpoA 3877791 c.717C>G synonymous_variant 0.15
rpoA 3877866 c.642G>C synonymous_variant 0.14
rpoA 3877900 p.Ser203Asn missense_variant 0.13
rpoA 3877962 c.546G>T synonymous_variant 0.16
rpoA 3877986 c.522G>C synonymous_variant 0.18
rpoA 3877989 c.519A>G synonymous_variant 0.2
rpoA 3878001 c.507A>G synonymous_variant 0.2
rpoA 3878022 c.486T>C synonymous_variant 0.16
rpoA 3878028 c.480G>C synonymous_variant 0.17
rpoA 3878031 c.477T>C synonymous_variant 0.17
rpoA 3878040 c.468T>C synonymous_variant 0.16
rpoA 3878043 c.465G>A synonymous_variant 0.16
rpoA 3878094 c.414C>G synonymous_variant 0.15
rpoA 3878106 c.402G>C synonymous_variant 0.15
rpoA 3878292 c.216T>C synonymous_variant 0.15
rpoA 3878298 c.210A>G synonymous_variant 0.15
rpoA 3878304 c.204G>C synonymous_variant 0.15
rpoA 3878313 c.195G>C synonymous_variant 0.18
rpoA 3878322 c.186A>G synonymous_variant 0.17
rpoA 3878340 c.168C>T synonymous_variant 0.15
rpoA 3878346 c.162T>C synonymous_variant 0.16
rpoA 3878364 c.144A>T synonymous_variant 0.15
rpoA 3878367 c.141C>G synonymous_variant 0.15
rpoA 3878376 c.132G>C synonymous_variant 0.17
rpoA 3878385 c.123C>G synonymous_variant 0.18
rpoA 3878388 c.120C>G synonymous_variant 0.18
rpoA 3878391 c.117T>C synonymous_variant 0.17
rpoA 3878415 c.93C>T synonymous_variant 0.16
rpoA 3878442 c.66G>C synonymous_variant 0.14
clpC1 4038356 c.2349T>C synonymous_variant 0.14
clpC1 4038368 c.2337T>C synonymous_variant 0.14
clpC1 4038392 c.2313C>T synonymous_variant 0.14
clpC1 4038419 c.2286T>C synonymous_variant 0.15
clpC1 4038640 p.Asp689Asn missense_variant 0.17
clpC1 4038653 c.2052C>T synonymous_variant 0.17
clpC1 4038658 p.Lys683Gln missense_variant 0.14
clpC1 4038661 p.Ser682Thr missense_variant 0.14
clpC1 4038662 c.2043T>C synonymous_variant 0.14
clpC1 4038671 c.2034T>C synonymous_variant 0.15
clpC1 4038695 c.2010C>G synonymous_variant 0.15
clpC1 4038701 c.2004G>C synonymous_variant 0.15
clpC1 4038704 c.2001T>C synonymous_variant 0.15
clpC1 4038707 c.1998C>G synonymous_variant 0.15
clpC1 4038710 c.1995G>C synonymous_variant 0.15
clpC1 4038713 c.1992T>C synonymous_variant 0.15
clpC1 4038878 c.1827A>G synonymous_variant 0.16
clpC1 4038908 c.1797C>G synonymous_variant 0.19
clpC1 4038914 c.1791G>C synonymous_variant 0.2
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.18
clpC1 4038953 c.1752A>G synonymous_variant 0.23
clpC1 4038956 c.1749T>C synonymous_variant 0.24
clpC1 4038965 c.1740T>C synonymous_variant 0.22
clpC1 4038971 c.1734T>C synonymous_variant 0.21
clpC1 4038974 c.1731T>C synonymous_variant 0.21
clpC1 4038989 c.1716T>C synonymous_variant 0.19
clpC1 4038997 c.1708T>C synonymous_variant 0.19
clpC1 4039004 c.1701C>G synonymous_variant 0.2
clpC1 4039022 c.1683A>G synonymous_variant 0.22
clpC1 4039064 c.1641C>T synonymous_variant 0.21
clpC1 4039097 c.1608G>C synonymous_variant 0.18
clpC1 4039103 c.1602T>C synonymous_variant 0.16
clpC1 4039106 c.1599G>C synonymous_variant 0.16
clpC1 4039112 c.1593C>G synonymous_variant 0.17
clpC1 4039121 c.1584T>C synonymous_variant 0.18
clpC1 4039142 c.1563A>G synonymous_variant 0.15
clpC1 4039145 c.1560G>C synonymous_variant 0.16
clpC1 4039169 p.Glu512Asp missense_variant 0.17
clpC1 4039178 c.1527G>C synonymous_variant 0.18
clpC1 4039183 c.1522T>C synonymous_variant 0.16
clpC1 4039517 c.1188C>G synonymous_variant 0.15
clpC1 4039610 c.1095G>C synonymous_variant 0.14
clpC1 4039616 c.1089G>C synonymous_variant 0.14
clpC1 4039622 c.1083C>T synonymous_variant 0.13
clpC1 4039625 c.1080G>A synonymous_variant 0.14
clpC1 4039661 c.1044T>G synonymous_variant 0.16
clpC1 4039664 c.1041G>C synonymous_variant 0.17
clpC1 4039694 c.1011G>C synonymous_variant 0.18
clpC1 4039724 c.981A>G synonymous_variant 0.27
clpC1 4039751 c.954A>G synonymous_variant 0.23
clpC1 4039757 c.948A>G synonymous_variant 0.21
clpC1 4039760 c.945T>C synonymous_variant 0.21
clpC1 4039766 c.939T>C synonymous_variant 0.22
clpC1 4039769 c.936C>G synonymous_variant 0.21
clpC1 4039775 c.930G>C synonymous_variant 0.21
clpC1 4039778 c.927A>G synonymous_variant 0.21
clpC1 4039781 c.924G>C synonymous_variant 0.2
clpC1 4039790 c.915C>G synonymous_variant 0.21
panD 4044023 c.259C>T synonymous_variant 0.7
embC 4240693 c.831T>G synonymous_variant 0.16
embC 4240699 c.837C>G synonymous_variant 0.15
embC 4240726 c.864G>C synonymous_variant 0.15
embC 4241089 c.1227C>G synonymous_variant 0.16
embC 4241107 c.1245G>C synonymous_variant 0.2
embC 4241140 c.1278A>G synonymous_variant 0.22
embC 4241146 c.1284C>G synonymous_variant 0.21
embC 4241158 c.1296T>C synonymous_variant 0.19
embC 4241161 c.1299C>G synonymous_variant 0.19
embC 4241162 c.1300T>C synonymous_variant 0.19
embC 4241170 c.1308G>C synonymous_variant 0.19
embC 4241173 c.1311C>T synonymous_variant 0.19
embC 4241657 p.Ser599Pro missense_variant 0.15
embC 4241665 c.1803G>C synonymous_variant 0.17
embC 4241671 c.1809T>C synonymous_variant 0.18
embC 4242075 p.Arg738Gln missense_variant 0.9
embA 4242643 c.-590C>T upstream_gene_variant 0.98
embA 4245137 c.1905T>C synonymous_variant 0.19
embA 4245146 c.1914G>A synonymous_variant 0.2
embA 4245149 c.1917C>G synonymous_variant 0.19
embA 4245153 p.Ile641Val missense_variant 0.2
embA 4245182 c.1950T>C synonymous_variant 0.18
embA 4245189 c.1957C>T synonymous_variant 0.17
embA 4245198 p.Leu656Ile missense_variant 0.16
embA 4245207 c.1975T>C synonymous_variant 0.16
embA 4245215 c.1983A>C synonymous_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 0.92
gid 4407588 c.615A>G synonymous_variant 0.9