lineage | Count |
---|---|
lineage2.2 | 3 |
lineage4.5 | 2 |
lineage4.9 | 16 |
114 | |
lineage2 | 2 |
lineage1.1.2 | 2 |
lineage4 | 16 |
lineage4.9;La3 | 1 |
lineage4.1.1 | 2 |
lineage3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage2.2.1 | 9 |
lineage3;lineage2.1 | 1 |
lineage4.3.4.2.1 | 4 |
lineage4.3 | 1 |
La1.8.1 | 2 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage1.1 | 1 |
lineage4.1.2.1 | 8 |
lineage3.1 | 2 |
lineage4.7 | 1 |
lineage4.8 | 3 |
lineage4.1.2 | 1 |
La1 | 1 |
lineage4;lineage3.1 | 1 |
La1.2 | 1 |
lineage3 | 1 |
lineage4.3.2 | 1 |
lineage4.3.4 | 1 |
lineage6.3.1 | 1 |
lineage4.4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 203 |
ID | Drug resistance | Lineage | Country iso2 | SRR18910194 | HR-TB | lineage2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR26159043 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR11068570 | Other | lineage4 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR19303884 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176779 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR4815280 | Other | None | SRR3675482 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675236 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None | ERR4816999 | Other | None | ERR176568 | Other | lineage4.3 | None | SRR3675383 | HR-TB | None | SRR3675311 | Other | None | ERR181887 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR2027263 | Other | lineage4 | None | SRR3675545 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4817031 | Sensitive | lineage4.1.1 | None | SRR3675558 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816656 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR234659 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818615 | Other | None | ERR4818394 | Other | lineage4.9 | None | ERR4818929 | HR-TB | None | ERR2514692 | Other | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | ERR2693239 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | ERR278594 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6045327 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6044855 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6046015 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6789626 | Other | None | ERR294248 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR323043 | HR-TB | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR11466174 | Other | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535086 | Other | None | ERR323045 | HR-TB | None | ERR1034634 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR3283014 | HR-TB | None | ERR11049020 | Other | lineage4.8 | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283028 | Other | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3797069 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR349330 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4407463 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR5336148 | Other | None | ERR4769450 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4769452 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798431 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR702404 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR702406 | HR-TB | None | SRR10808805 | Sensitive | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786604 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR736874 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117709 | HR-TB | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1173384 | Other | lineage4 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1196546 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR1175074 | MDR-TB | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861447 | RR-TB | lineage4.9 | None | SRR13861606 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None |
---|