Rv1305 - c.141G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
7 Sensitive
1 RR-TB
24 HR-TB
11 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 39 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 8 |
| lineage2.2.1 | 11 |
| lineage2.1;lineage4.9 | 10 |
| lineage4.3.3 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1.2 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4 | 3 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7;lineage4.9 | 3 |
| 21 | |
| lineage3.1;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage3.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 3 |
| lineage4.4.1.2 | 1 |
| lineage4.6.1 | 1 |
| M.canetti;lineage1 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.7 | 1 |
| La3 | 2 |
| lineage4.3.4.1 | 2 |
| La3;lineage2.2.1 | 1 |
| lineage3 | 2 |
| lineage4.1.2.1 | 1 |
| lineage2.1 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 146 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1034634 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1196494 | MDR-TB | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR6046593 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | ERR4817893 | Other | lineage4.8 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR11068570 | Other | lineage4 | None | SRR1184381 | MDR-TB | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR6046878 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR1173355 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4797201 | Other | None | ERR4816999 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR26331611 | Sensitive | lineage4.9 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR25827682 | Other | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR234659 | Other | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | SRR21690574 | Other | lineage4.1.2.1 | None | SRR1184372 | MDR-TB | None | SRR6045555 | Other | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196768 | MDR-TB | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173218 | Other | lineage4.3.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4800341 | Other | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR9117721 | HR-TB | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR1172817 | Other | La3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None |
|---|
