Run ID: SRR21690574
Sample name:
Date: 2024-10-04T20:01:32.028906
Number of reads: 4303363
Percentage reads mapped: 99.51
Median coverage: 64.0
Strain: lineage4.1.2.1
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4.1 | Euro-American | None | 0.99 |
lineage4.1.2 | Euro-American | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | RD182 | 1.0 |
La1.2.BCG | M.bovis | None | 0.06 |
lineage4 | Euro-American | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | rrs | n.462C>T | Uncertain significance | Mutation from literature |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.22 | streptomycin | Uncertain significance | Mutation from literature |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.98 | pretomanid | |
delamanid | Uncertain significance | |||||
clofazimine | Not assoc w R | |||||
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 | isoniazid | Not assoc w R |
ethionamide | Not assoc w R | |||||
ccsA | 620682 | c.792G>A | synonymous_variant | 0.15 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620688 | c.798G>C | synonymous_variant | 0.16 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620710 | p.Val274Ile | missense_variant | 0.14 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
Rv0565c | 657269 | p.Ser68Pro | missense_variant | 1.0 | ethionamide | Uncertain significance |
hadA | 732321 | p.Glu131Ala | missense_variant | 0.12 | isoniazid | |
hadA | 732329 | p.Leu134Val | missense_variant | 0.13 | isoniazid | Uncertain significance |
hadA | 732337 | c.408G>A | synonymous_variant | 0.14 | isoniazid | |
hadA | 732378 | c.450_452dupAGA | disruptive_inframe_insertion | 0.18 | isoniazid | |
hadA | 732396 | p.Gly156Ala | missense_variant | 0.17 | isoniazid | |
hadA | 732398 | p.Ala157Thr | missense_variant | 0.18 | isoniazid | |
nusG | 734442 | c.189G>A | synonymous_variant | 0.15 | rifampicin | |
nusG | 734451 | c.198G>C | synonymous_variant | 0.15 | rifampicin | |
nusG | 734457 | c.204C>G | synonymous_variant | 0.15 | rifampicin | |
nusG | 734472 | c.219T>C | synonymous_variant | 0.15 | rifampicin | |
nusG | 734475 | c.222T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.92 | rifampicin | Not assoc w R |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760331 | c.525G>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760370 | c.564C>G | synonymous_variant | 0.17 | rifampicin | |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.15 | rifampicin | Uncertain significance |
rpoB | 760380 | p.Thr192Leu | missense_variant | 0.15 | rifampicin | |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760412 | c.606C>G | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760925 | c.1119T>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760928 | c.1122G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760931 | c.1125C>G | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760934 | c.1128C>T | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.16 | rifampicin | |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.13 | rifampicin | |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.12 | rifampicin | |
rpoB | 761858 | c.2052G>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 761873 | c.2067A>C | synonymous_variant | 0.15 | rifampicin | |
rpoB | 761885 | c.2079T>C | synonymous_variant | 0.17 | rifampicin | |
rpoB | 761906 | c.2100C>G | synonymous_variant | 0.19 | rifampicin | |
rpoB | 761909 | c.2103T>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761912 | c.2106T>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761915 | p.Asp703Glu | missense_variant | 0.2 | rifampicin | |
rpoB | 761916 | p.Asp704Asn | missense_variant | 0.21 | rifampicin | |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.17 | rifampicin | |
rpoB | 762017 | c.2211A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoC | 762410 | c.-960T>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoB | 762416 | c.2610A>G | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoC | 762419 | c.-951C>G | upstream_gene_variant | 0.12 | rifampicin | |
rpoC | 762434 | c.-936T>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoB | 762449 | c.2643C>A | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 762467 | c.-903C>T | upstream_gene_variant | 0.17 | rifampicin | |
rpoB | 762488 | c.2682G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 762489 | p.Val895Gln | missense_variant | 0.13 | rifampicin | |
rpoC | 762509 | c.-861T>G | upstream_gene_variant | 0.14 | rifampicin | |
rpoB | 762510 | p.Ala902Pro | missense_variant | 0.15 | rifampicin | Uncertain significance |
rpoC | 762521 | c.-849C>T | upstream_gene_variant | 0.16 | rifampicin | |
rpoC | 762533 | c.-837T>C | upstream_gene_variant | 0.15 | rifampicin | |
rpoB | 762926 | c.3120C>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762929 | c.3123G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.21 | rifampicin | |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.18 | rifampicin | |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.15 | rifampicin | |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 764195 | p.Ser276Ile | missense_variant | 0.13 | rifampicin | |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.12 | rifampicin | |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 764215 | c.846A>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764236 | c.867G>A | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764248 | c.879C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764272 | c.903G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764338 | c.969G>A | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764651 | c.1282_1284delTCGinsAGC | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 | rifampicin | Not assoc w R |
rpoC | 765292 | c.1923G>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 765298 | c.1929G>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 765300 | p.Val644Ala | missense_variant | 0.14 | rifampicin | Uncertain significance |
rpoC | 765319 | c.1950A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765326 | p.His653Ala | missense_variant | 0.15 | rifampicin | Uncertain significance |
rpoC | 765329 | p.Ser654Gly | missense_variant | 0.15 | rifampicin | |
rpoC | 765346 | c.1977C>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765349 | c.1980T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 765352 | c.1983G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 765383 | p.Met672Leu | missense_variant | 0.22 | rifampicin | Uncertain significance |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.24 | rifampicin | |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.22 | rifampicin | |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765580 | c.2211G>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 765613 | p.His748Gln | missense_variant | 0.12 | rifampicin | |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.22 | rifampicin | |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 765739 | c.2370G>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765793 | c.2424C>G | synonymous_variant | 0.13 | rifampicin | |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.13 | rifampicin | |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 765814 | c.2445A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 765850 | c.2481G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765982 | c.2613C>G | synonymous_variant | 0.12 | rifampicin | |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoC | 766381 | c.3012C>T | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766384 | c.3015A>G | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766390 | c.3021C>T | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766408 | c.3039C>G | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766411 | c.3042C>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.21 | rifampicin | |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 766462 | c.3093G>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.13 | rifampicin | |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766801 | c.3432C>G | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.16 | rifampicin | |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 767134 | c.3765C>A | synonymous_variant | 0.2 | rifampicin | |
rpoC | 767158 | c.3789T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 767181 | p.Ala1271Glu | missense_variant | 0.12 | rifampicin | |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
mmpL5 | 777133 | p.Val450Ile | missense_variant | 0.12 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 777158 | c.1323C>G | synonymous_variant | 0.13 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 777164 | c.1317C>G | synonymous_variant | 0.12 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 777170 | c.1311T>C | synonymous_variant | 0.13 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 777176 | p.Glu435Asp | missense_variant | 0.13 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 777191 | c.1290C>G | synonymous_variant | 0.12 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 777492 | p.Pro330Leu | missense_variant | 0.98 | bedaquiline | |
clofazimine | ||||||
rpsL | 781276 | c.-284A>C | upstream_gene_variant | 1.0 | streptomycin | |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 | streptomycin | Not assoc w R |
rpsL | 781649 | c.90T>C | synonymous_variant | 0.13 | streptomycin | |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781700 | c.141G>C | synonymous_variant | 0.13 | streptomycin | |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781748 | c.189C>G | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.19 | streptomycin | |
rpsL | 781772 | c.213C>A | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.15 | streptomycin | |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.13 | linezolid | |
rplC | 800627 | c.-182C>T | upstream_gene_variant | 0.13 | linezolid | |
rplC | 800648 | c.-161A>T | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800654 | c.-155T>C | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800693 | c.-116A>G | upstream_gene_variant | 0.18 | linezolid | |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.21 | linezolid | |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.19 | linezolid | |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.2 | linezolid | |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.18 | linezolid | |
rplC | 800747 | c.-62C>G | upstream_gene_variant | 0.18 | linezolid | |
rplC | 800771 | c.-38C>T | upstream_gene_variant | 0.13 | linezolid | |
rplC | 800817 | c.9A>T | synonymous_variant | 0.11 | linezolid | |
fbiC | 1304526 | c.1596T>G | synonymous_variant | 0.14 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304535 | c.1605G>A | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304544 | c.1614T>C | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304545 | p.Val539Thr | missense_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304553 | c.1623C>T | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304559 | p.Glu543Asp | missense_variant | 0.14 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304565 | c.1635C>G | synonymous_variant | 0.14 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304568 | c.1638T>C | synonymous_variant | 0.14 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304580 | c.1650T>C | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304613 | c.1683T>C | synonymous_variant | 0.22 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304634 | c.1704C>G | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304640 | c.1710A>C | synonymous_variant | 0.15 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.12 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.12 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.13 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304958 | c.2028T>G | synonymous_variant | 0.15 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304983 | c.2053C>T | synonymous_variant | 0.15 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304994 | c.2064A>G | synonymous_variant | 0.12 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304995 | p.Leu689Met | missense_variant | 0.12 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
atpE | 1461170 | c.126A>G | synonymous_variant | 0.13 | bedaquiline | |
atpE | 1461185 | c.141G>T | synonymous_variant | 0.14 | bedaquiline | |
atpE | 1461197 | c.153A>G | synonymous_variant | 0.12 | bedaquiline | |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472300 | n.455C>T | non_coding_transcript_exon_variant | 0.21 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.12 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.14 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.36 | capreomycin | |
linezolid | ||||||
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.35 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.26 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473986 | n.329T>C | non_coding_transcript_exon_variant | 0.13 | capreomycin | |
linezolid | ||||||
rrl | 1473987 | n.330G>A | non_coding_transcript_exon_variant | 0.12 | capreomycin | |
linezolid | ||||||
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.13 | capreomycin | |
linezolid | ||||||
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.14 | capreomycin | Not assoc w R |
linezolid | Not assoc w R | |||||
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.3 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.34 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.41 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.15 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.26 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.34 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.37 | capreomycin | |
linezolid | ||||||
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.36 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.29 | capreomycin | |
linezolid | ||||||
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.14 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.15 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.13 | capreomycin | |
linezolid | Uncertain significance | |||||
rrl | 1475761 | n.2104_2106delCGCinsGT | non_coding_transcript_exon_variant | 0.78 | capreomycin | |
linezolid | ||||||
rrl | 1475765 | n.2111delG | non_coding_transcript_exon_variant | 0.95 | capreomycin | |
linezolid | ||||||
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.84 | capreomycin | |
linezolid | ||||||
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.23 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476214 | n.2557G>A | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.13 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.27 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.27 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.25 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.24 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.24 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rpsA | 1833532 | c.-10A>C | upstream_gene_variant | 0.12 | pyrazinamide | |
rpsA | 1833554 | p.Thr5Ala | missense_variant | 0.16 | pyrazinamide | Uncertain significance |
rpsA | 1833568 | c.27G>C | synonymous_variant | 0.2 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.15 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.12 | pyrazinamide | |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.12 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.12 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.12 | pyrazinamide | |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834733 | p.Ala398Ser | missense_variant | 0.17 | pyrazinamide | |
rpsA | 1834738 | c.1197A>G | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834765 | p.Glu408Asp | missense_variant | 0.17 | pyrazinamide | |
rpsA | 1834775 | p.Ala412Thr | missense_variant | 0.14 | pyrazinamide | |
tsnR | 1854300 | p.Leu232Pro | missense_variant | 1.0 | linezolid | Not assoc w R |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
bacA | 2064972 | c.-244T>C | upstream_gene_variant | 0.25 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2064978 | c.-250G>C | upstream_gene_variant | 0.24 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2064979 | c.-251C>T | upstream_gene_variant | 0.24 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2064984 | c.-256A>G | upstream_gene_variant | 0.24 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2064993 | c.-265T>C | upstream_gene_variant | 0.24 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
ndh | 2101939 | c.1104A>G | synonymous_variant | 0.16 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101960 | c.1083A>G | synonymous_variant | 0.14 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101963 | c.1080G>A | synonymous_variant | 0.14 | isoniazid | Not assoc w R - Interim |
delamanid | Not assoc w R - Interim | |||||
ethionamide | Not assoc w R - Interim | |||||
ndh | 2101966 | c.1077T>G | synonymous_variant | 0.13 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101972 | c.1071G>C | synonymous_variant | 0.13 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
PPE35 | 2170408 | p.Ala69Thr | missense_variant | 1.0 | pyrazinamide | |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 | isoniazid | |
kasA | 2518789 | c.675G>C | synonymous_variant | 0.14 | isoniazid | |
kasA | 2518792 | c.678C>A | synonymous_variant | 0.14 | isoniazid | |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.14 | isoniazid | |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.13 | isoniazid | |
Rv2477c | 2782927 | p.Thr372Glu | missense_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782936 | c.1107G>T | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782948 | c.1095A>G | synonymous_variant | 0.2 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782957 | c.1086A>G | synonymous_variant | 0.16 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2782966 | c.1077C>A | synonymous_variant | 0.13 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782969 | c.1074A>C | synonymous_variant | 0.13 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783761 | c.282G>C | synonymous_variant | 0.12 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783776 | c.267G>C | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783779 | c.264T>C | synonymous_variant | 0.14 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783797 | p.Asp82Glu | missense_variant | 0.13 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783815 | c.228A>G | synonymous_variant | 0.14 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783821 | p.Gln74Leu | missense_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783833 | c.210G>C | synonymous_variant | 0.13 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783839 | c.204C>G | synonymous_variant | 0.14 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783843 | p.Gly67Asp | missense_variant | 0.13 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783914 | c.129T>C | synonymous_variant | 0.12 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783920 | c.123G>C | synonymous_variant | 0.13 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783953 | c.90G>A | synonymous_variant | 0.13 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783962 | c.81T>C | synonymous_variant | 0.14 | kanamycin | Not assoc w R - Interim |
levofloxacin | ||||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783971 | c.72G>C | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783980 | c.63C>G | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2680 | 2996034 | c.-71G>A | upstream_gene_variant | 0.2 | capreomycin | Uncertain significance |
Rv2680 | 2996085 | c.-20G>A | upstream_gene_variant | 0.23 | capreomycin | Uncertain significance |
thyX | 3067661 | c.285C>G | synonymous_variant | 0.12 | para-aminosalicylic_acid | |
thyX | 3067869 | p.Thr26Ser | missense_variant | 0.12 | para-aminosalicylic_acid | |
thyX | 3067874 | c.72C>G | synonymous_variant | 0.12 | para-aminosalicylic_acid | |
thyX | 3067883 | c.63C>G | synonymous_variant | 0.12 | para-aminosalicylic_acid | |
thyX | 3067886 | c.60A>C | synonymous_variant | 0.12 | para-aminosalicylic_acid | |
thyX | 3067889 | c.57C>G | synonymous_variant | 0.13 | para-aminosalicylic_acid | |
thyX | 3067898 | p.Asp16Glu | missense_variant | 0.13 | para-aminosalicylic_acid | |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 | cycloserine | |
mtrB | 3625065 | p.Met517Leu | missense_variant | 1.0 | rifampicin | Not assoc w R |
bedaquiline | Uncertain significance | |||||
mtrA | 3627068 | c.282T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3627071 | c.279G>T | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627074 | c.-461G>C | upstream_gene_variant | 0.12 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627080 | c.270T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627083 | c.-470G>C | upstream_gene_variant | 0.12 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627098 | c.252A>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627104 | c.-491C>G | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627119 | c.231T>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627122 | c.-509T>C | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627167 | c.-554T>C | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627181 | c.-568T>C | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627182 | c.-569T>C | upstream_gene_variant | 0.21 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627188 | c.162A>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627209 | c.-596G>A | upstream_gene_variant | 0.25 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627221 | c.129C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3627227 | c.123T>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627233 | c.-620T>C | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627236 | c.-623T>C | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627242 | c.108C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627254 | c.-641C>T | upstream_gene_variant | 0.21 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627263 | c.-650C>T | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627266 | c.-653A>G | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627272 | c.-659G>T | upstream_gene_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627275 | c.-662G>T | upstream_gene_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
rpoA | 3877656 | c.852T>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3877679 | p.Ala277Ser | missense_variant | 0.13 | rifampicin | |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoA | 3877704 | c.804G>C | synonymous_variant | 0.13 | rifampicin | |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoA | 3877791 | c.717C>G | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.2 | rifampicin | |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3877878 | c.630G>C | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3877890 | c.618C>T | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.13 | rifampicin | |
rpoA | 3877900 | p.Ser203Asn | missense_variant | 0.12 | rifampicin | |
rpoA | 3878232 | c.276G>C | synonymous_variant | 0.13 | rifampicin | |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.13 | rifampicin | |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3878388 | c.120C>G | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878742 | c.-235G>A | upstream_gene_variant | 0.12 | rifampicin | |
rpoA | 3878746 | c.-239A>G | upstream_gene_variant | 0.14 | rifampicin | Uncertain significance |
rpoA | 3878749 | c.-242G>T | upstream_gene_variant | 0.14 | rifampicin | |
rpoA | 3878761 | c.-254G>C | upstream_gene_variant | 0.14 | rifampicin | |
rpoA | 3878785 | c.-278T>G | upstream_gene_variant | 0.14 | rifampicin | |
rpoA | 3878788 | c.-281G>C | upstream_gene_variant | 0.14 | rifampicin | Uncertain significance |
rpoA | 3878806 | c.-299C>G | upstream_gene_variant | 0.14 | rifampicin | |
rpoA | 3878809 | c.-302T>C | upstream_gene_variant | 0.16 | rifampicin | |
rpoA | 3878860 | c.-353C>T | upstream_gene_variant | 0.18 | rifampicin | |
rpoA | 3878878 | c.-371T>C | upstream_gene_variant | 0.16 | rifampicin | Uncertain significance |
rpoA | 3878909 | c.-402A>G | upstream_gene_variant | 0.17 | rifampicin | |
rpoA | 3878914 | c.-407T>C | upstream_gene_variant | 0.17 | rifampicin | Uncertain significance |
rpoA | 3878917 | c.-410G>A | upstream_gene_variant | 0.18 | rifampicin | Uncertain significance |
rpoA | 3878938 | c.-431T>A | upstream_gene_variant | 0.15 | rifampicin | |
rpoA | 3878947 | c.-440G>C | upstream_gene_variant | 0.14 | rifampicin | Uncertain significance |
rpoA | 3878976 | c.-469A>G | upstream_gene_variant | 0.13 | rifampicin | Uncertain significance |
rpoA | 3879013 | c.-506A>G | upstream_gene_variant | 0.12 | rifampicin | |
rpoA | 3879094 | c.-587T>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoA | 3879127 | c.-620T>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoA | 3879154 | c.-647T>C | upstream_gene_variant | 0.12 | rifampicin | |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.29 | pyrazinamide | |
clpC1 | 4038653 | c.2052C>T | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4038658 | p.Lys683Gln | missense_variant | 0.28 | pyrazinamide | |
clpC1 | 4038661 | p.Ser682Thr | missense_variant | 0.28 | pyrazinamide | |
clpC1 | 4038662 | c.2043T>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4038671 | c.2034T>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4038683 | c.2022T>C | synonymous_variant | 0.27 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038695 | c.2010C>G | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4038701 | c.2004G>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038704 | c.2001T>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038707 | c.1998C>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038710 | c.1995G>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038749 | c.1956C>G | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4038755 | c.1950G>T | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4038770 | c.1935C>T | synonymous_variant | 0.12 | pyrazinamide | |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4038821 | c.1884G>A | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038845 | c.1860G>C | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.18 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.16 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4038923 | c.1780_1782delCTAinsTTG | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.15 | pyrazinamide | |
glpK | 4138718 | c.1038T>C | synonymous_variant | 0.12 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4138721 | c.1035G>A | synonymous_variant | 0.12 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
isoniazid | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
glpK | 4138724 | c.1032A>G | synonymous_variant | 0.12 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
embC | 4239298 | c.-565C>T | upstream_gene_variant | 1.0 | ethambutol | Not assoc w R |
embC | 4242643 | c.2781C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
embC | 4242791 | p.Ala977Ser | missense_variant | 0.13 | ethambutol | |
embA | 4242796 | c.-437G>C | upstream_gene_variant | 0.14 | ethambutol | |
embA | 4242799 | c.-434T>C | upstream_gene_variant | 0.13 | ethambutol | |
embC | 4242803 | p.Val981Leu | missense_variant | 0.87 | ethambutol | Not assoc w R |
embB | 4247512 | c.999T>C | synonymous_variant | 0.15 | ethambutol | |
embB | 4247539 | c.1026T>C | synonymous_variant | 0.14 | ethambutol | |
embB | 4247554 | c.1041T>C | synonymous_variant | 0.13 | ethambutol | |
embB | 4247974 | c.1461C>G | synonymous_variant | 0.12 | ethambutol | |
embB | 4248007 | c.1494C>G | synonymous_variant | 0.18 | ethambutol | |
embB | 4248011 | p.Ser500Arg | missense_variant | 0.18 | ethambutol | |
embB | 4248014 | p.Thr501Ala | missense_variant | 0.18 | ethambutol | Uncertain significance |
embB | 4248035 | p.Val508Ile | missense_variant | 0.19 | ethambutol | |
embB | 4248040 | c.1527C>G | synonymous_variant | 0.19 | ethambutol | |
embB | 4248041 | p.Ala510Thr | missense_variant | 0.19 | ethambutol | Uncertain significance |
embB | 4248044 | p.Lys511Ala | missense_variant | 0.2 | ethambutol | |
embB | 4248070 | c.1557T>C | synonymous_variant | 0.23 | ethambutol | |
embB | 4248085 | c.1572T>C | synonymous_variant | 0.2 | ethambutol | |
embB | 4248097 | c.1584C>G | synonymous_variant | 0.15 | ethambutol | |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | kanamycin | Not assoc w R |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
whiB6 | 4338732 | c.-211C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
amikacin |