Rv0668 - c.3690T>G


Drug resistance types
47 Sensitive 9 RR-TB 182 HR-TB 38 MDR-TB 21 Pre-XDR-TB 0 XDR-TB 202 Other
lineage Counts
lineage Count
lineage2 4
189
lineage2.2.1 42
lineage1.2.1.2 1
lineage4.9 48
lineage4.3.4.1 5
lineage4.1.1.3 6
lineage1.1.1 1
lineage4.8 17
lineage1.2.1.2.1 1
lineage1.1.2 4
La1.8.1 3
lineage2.1 4
lineage3 14
lineage4.5 2
lineage2.2 5
lineage4 22
lineage4.2.2.2 2
lineage9;lineage3.1 1
lineage2.2.1;La3 1
lineage4.6.2.2 6
lineage4.3.3 7
lineage4.9;La3 1
lineage6.3;lineage4.9;lineage2.1 1
lineage4.9;La1 1
lineage4.9;lineage4.6.3 1
lineage6.3;lineage2.2.1 1
lineage4.2;La1.7 1
La1.2 2
lineage4.1.1.1 1
lineage1.1.1.1 1
lineage3;lineage2.2.1 1
lineage4.1 2
lineage4.1.1 2
lineage4.3.4.2.1 4
lineage4.3.4 1
lineage3;lineage2.1 1
lineage4.1.2.1 31
lineage4.3 1
lineage1.1 2
lineage4.4.1.1 5
lineage4;lineage1.1.2 1
lineage4.8;La3 2
lineage4.1.2 1
lineage4;lineage1.1 1
lineage4.7 2
lineage4.1.3;lineage1.1.2 1
lineage2.2.1.1 5
lineage4.1.2.1.1 2
lineage5.2 2
lineage4.2.1 2
lineage4.2.1.1 1
lineage4.4.1.1;lineage1.2.2.1 2
lineage3.1 4
La2 1
lineage4.1.2.1;lineage2.2.1 1
lineage4.3.4.1;La1.7 1
La1 2
lineage4.1.3 2
lineage6.1.1 2
lineage6.3.1 3
lineage3.1.2 2
lineage1.2.2.2 3
lineage4.6.1.1 1
lineage1.1.3.2 2
lineage4.3.2 2
lineage4.9.1 1
lineage4.8;lineage4.1 1
lineage6.1.3 1
lineage6 1
lineage3.1.2.2;lineage3.1.2.1 1
La3 1
spoligotype Counts
spoligotype Count
None 499
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1196677 HR-TB lineage2 None
SRR1196768 MDR-TB None
SRR11972367 Sensitive lineage2.2.1 None
SRR12006550 Other lineage1.2.1.2 None
SRR12416840 MDR-TB lineage4.9 None
SRR12142341 HR-TB None
SRR12416824 HR-TB None
SRR13837424 Sensitive lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR13837985 Sensitive lineage4.9 None
SRR13861304 Other lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR13861151 RR-TB lineage4.9 None
SRR13861368 RR-TB lineage4.9 None
SRR13861322 Other lineage4.9 None
SRR13861326 Other lineage4.9 None
SRR13861439 RR-TB lineage4.9 None
SRR13861396 HR-TB lineage4.9 None
SRR13861596 Other lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR13861549 RR-TB lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
SRR13861646 Other lineage4.9 None
SRR15014682 MDR-TB lineage4.8 None
SRR14801749 Sensitive None
SRR1640750 HR-TB None
SRR15368973 Other None
SRR1510066 Other lineage1.2.1.2.1 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR19304036 HR-TB None
SRR1791696 Other La1.8.1 None
SRR18003019 Other lineage2.2.1 None
SRR19303884 HR-TB None
SRR1710057 Other lineage2.1 None
SRR17658565 Other lineage3 None
SRR17832802 HR-TB lineage3 None
SRR18213713 HR-TB lineage4.5 None
SRR18910194 HR-TB lineage2.2 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR20632814 Sensitive lineage4 None
SRR20969677 HR-TB lineage2 None
SRR25827771 Pre-XDR-TB lineage4.2.2.2 None
SRR25827418 Pre-XDR-TB lineage9;lineage3.1 None
ERR11081257 Other lineage4.8 None
SRR25827682 Other None
SRR26937071 MDR-TB lineage2.2.1;La3 None
ERR11082350 MDR-TB lineage4.6.2.2 None
ERR11138607 Pre-XDR-TB lineage2.2.1 None
SRR21732980 Other lineage4.3.3 None
SRR26399973 Other lineage4.9;La3 None
SRR22251329 Other lineage2.1 None
SRR26159043 Other lineage4.9 None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
SRR23961542 Other lineage4.9;La1 None
SRR28119823 Sensitive lineage4.9 None
SRR26159047 Other lineage4.9;lineage4.6.3 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR23961559 Other lineage4.2;La1.7 None
SRR23961549 Other La1.2 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR26399255 Sensitive lineage2.2.1 None
SRR26399491 Sensitive lineage1.1.1.1 None
SRR28119741 Pre-XDR-TB lineage2.2.1 None
ERR176778 HR-TB None
SRR25827330 MDR-TB lineage4.8 None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
ERR4815604 HR-TB None
ERR1035239 HR-TB None
SRR3675464 HR-TB lineage4.1 None
ERR4813861 Other lineage4.3.3 None
ERR176793 Other lineage4.1.1 None
SRR6325445 HR-TB None
ERR550636 MDR-TB lineage4.1.1.3 None
SRR3675465 HR-TB None
ERR176779 HR-TB None
ERR158583 HR-TB None
SAMN02585910 Other lineage2.2.1 None
SRR3675482 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
SRR3675221 HR-TB None
ERR161033 HR-TB None
SRR3675488 HR-TB None
ERR161034 Other lineage4.3.4.2.1 None
ERR161039 Sensitive lineage4.3.4 None
SRR3416776 Other lineage2.1 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
ERR181744 HR-TB None
SRR3675486 HR-TB None
SRR3675222 Other None
SRR3675501 HR-TB None
ERR176651 HR-TB None
SRR3675280 HR-TB lineage4.9 None
SRR3675284 HR-TB lineage4.9 None
SRR3675311 Other None
SRR3675236 HR-TB None
SRR3675234 Other None
SRR3675232 Other lineage4.1.2.1 None
ERR176568 Other lineage4.3 None
ERR176643 HR-TB None
SRR3675502 Other None
SRR3675312 HR-TB lineage4 None
ERR181887 HR-TB None
ERR176740 HR-TB None
SRR3675456 HR-TB None
ERR176751 HR-TB None
SRR3675383 HR-TB None
ERR4815752 Other lineage4.9 None
SRR3675503 Sensitive lineage4.9 None
SRR3675510 Other None
ERR4816999 Other None
ERR2229542 Other lineage4.8 None
ERR2027263 Other lineage4 None
ERR4816127 Sensitive lineage1.1 None
SRR3675545 HR-TB None
ERR212001 HR-TB None
ERR4816151 Other lineage4.8 None
ERR4817037 Other lineage4.9 None
SRR3675550 Other None
ERR212033 HR-TB None
SRR5341422 HR-TB lineage2.1 None
ERR212125 HR-TB lineage4 None
SRR3675555 HR-TB None
SRR3675558 HR-TB None
ERR212123 Other None
SRR3675572 Other None
ERR4817060 RR-TB None
SRR3675574 HR-TB None
ERR212121 HR-TB None
ERR4816466 HR-TB None
ERR4816470 Other lineage3 None
SRR3675571 HR-TB None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR4816548 MDR-TB lineage4.5 None
SRR3742665 HR-TB None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR4816585 Other lineage2.2 None
ERR502912 Other lineage2.2.1 None
ERR4816656 HR-TB None
ERR4817692 HR-TB lineage4;lineage1.1.2 None
ERR3275215 Other lineage4.1.2.1 nl
ERR4817735 Other lineage4.8 None
ERR4817893 Other lineage4.8;La3 None
SRR7496472 Other None
ERR4817896 HR-TB lineage2.2.1 None
ERR553132 MDR-TB lineage4.1.2.1 None
ERR4818394 Other lineage4.9 None
ERR4818021 Other La1.8.1 None
ERR3275196 Other lineage2.2.1 nl
ERR1035162 Other None
ERR234659 HR-TB None
ERR2513229 MDR-TB lineage2.2.1 None
ERR4818347 Other lineage4.1.2 None
ERR2509673 Other lineage2.2.1 None
ERR2513259 Other lineage3 None
ERR2513470 Other lineage4.2.2.2 None
ERR4818929 HR-TB None
ERR4818607 Sensitive lineage4.9 None
SRR5007188 Other lineage4 None
ERR4818615 Other None
SRR5341400 HR-TB lineage4 None
ERR4820854 Other lineage4.1.2.1 None
ERR4819280 Sensitive lineage4 None
ERR3275201 Sensitive lineage4.8 nl
SRR5341373 HR-TB lineage4 None
ERR4819322 Other lineage4;lineage1.1 None
ERR4820335 Other lineage4.1.2.1 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR2514327 HR-TB lineage4.8 None
SRR5341418 Other None
SRR5341432 HR-TB lineage4 None
ERR4819781 Other lineage2.2.1 None
ERR1035138 MDR-TB None
SAMN02414850 Other lineage4.1.2.1 None
ERR4819932 Other lineage4.7 None
ERR2514692 Other None
ERR1023509 Other None
SRR5341313 HR-TB None
SRR5341293 HR-TB lineage4 None
SRR5341302 HR-TB None
ERR2514821 Other lineage2.2.1 None
SRR5341315 Sensitive None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341333 HR-TB None
ERR2446563 Other lineage2.2.1 nl
ERR2517514 Sensitive lineage4.8 None
SRR5341470 HR-TB None
ERR2693231 Other None
ERR2446570 Sensitive lineage4.8 nl
SRR6045519 HR-TB None
ERR2693230 Other None
ERR2693257 Other None
SRR6045526 HR-TB None
ERR4821053 Other lineage3 None
ERR2693239 HR-TB None
ERR2693254 Other None
ERR278594 HR-TB None
SRR6045555 HR-TB None
ERR4822101 Sensitive lineage4.1.3;lineage1.1.2 None
ERR2693227 Other lineage4.9 None
ERR2446118 Other lineage4.1.2.1 nl
SRR6044855 Other lineage4.9 None
SRR6046133 HR-TB None
SRR6044790 HR-TB None
SRR6044838 Other lineage4.9 None
ERR2693232 Other lineage4.9 None
SRR6045191 Sensitive lineage4.9 None
SRR6045952 HR-TB None
SRR6044890 Other lineage4.9 None
SRR6045327 HR-TB None
SRR6045233 HR-TB None
SRR6046066 HR-TB None
SRR6046362 HR-TB None
SRR6325442 HR-TB None
SRR6046305 Other lineage4.9 None
SRR6045399 Other None
SRR6046225 HR-TB None
SRR6046259 Sensitive lineage4.9 None
SRR6046397 Other None
SRR6325444 HR-TB None
SRR6046382 HR-TB lineage2.2.1 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR6046514 HR-TB None
ERR4830353 Other None
ERR2517489 Sensitive lineage4.1.2.1 nl
SRR6046460 HR-TB None
SRR6046521 Other lineage4.4.1.1 None
SRR6046540 HR-TB None
SRR6325448 HR-TB None
SRR6079962 HR-TB lineage2.2.1.1 None
SRR6325447 HR-TB None
SRR6046824 HR-TB None
SRR6046594 HR-TB lineage4 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6397654 HR-TB lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR11466146 Other lineage4.3.4.2.1 None
ERR4972483 Pre-XDR-TB lineage4.1.2.1.1 None
ERR3077978 Other lineage1.1 None
ERR4872094 MDR-TB lineage5.2 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR6785267 Other lineage2.2.1 None
ERR294248 HR-TB None
SRR6785268 Sensitive lineage4.2.1 None
ERR4831545 Pre-XDR-TB lineage2.2 None
SRR6785262 Sensitive lineage4.2.1 None
SRR6832178 HR-TB lineage4.2.1.1 None
SRR6785527 Sensitive lineage2.2.1 None
SRR6832249 Other lineage2.2.1 None
SRR6785413 Other lineage2.2.1 None
ERR294266 HR-TB None
ERR11465597 Sensitive lineage4.1.2.1 None
ERR11465665 Other lineage4.1.1.3 None
ERR11465711 Other lineage4.4.1.1;lineage1.2.2.1 None
SRR6789626 Other None
SRR6832787 RR-TB lineage2.2.1 None
ERR11465801 Other lineage4.3.4.1 None
ERR502889 Other None
ERR323034 HR-TB lineage3.1 None
ERR323036 HR-TB None
ERR502524 HR-TB La2 None
ERR502532 HR-TB None
SRR7131023 Other lineage4.1.2.1 None
ERR5311090 HR-TB None
ERR5311099 HR-TB None
ERR5311081 HR-TB None
SRR7496509 Other None
SRR7496471 Sensitive None
SRR9971270 RR-TB lineage2.2.1 None
SRR8217918 HR-TB None
ERR323038 HR-TB None
SRR7496517 Other None
ERR11466174 Other lineage4.8 None
SRR7496523 Other lineage4.7 None
ERR323045 HR-TB None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323039 HR-TB None
ERR323041 HR-TB None
SRR7535086 Other None
ERR323043 HR-TB None
ERR11466499 Other lineage4.3.4.1 None
ERR323053 HR-TB None
ERR323063 HR-TB None
ERR11489020 MDR-TB lineage2.2.1 None
ERR323055 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR11465025 Other lineage4.1.1.3 None
ERR11488822 Pre-XDR-TB lineage4.1.2.1;lineage2.2.1 None
ERR1035157 Other lineage4.9 None
ERR1023525 HR-TB lineage4 None
ERR11466044 Other lineage4.1.1.3 None
ERR067681 HR-TB None
ERR067699 HR-TB lineage4 None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1063859 HR-TB None
ERR3283043 Other lineage4.9 None
ERR133825 Sensitive lineage4 None
ERR11465714 Other lineage4.4.1.1;lineage1.2.2.1 None
ERR3283024 Other None
ERR3283027 HR-TB None
ERR3283032 HR-TB None
ERR11049020 Other lineage4.8 None
ERR133986 HR-TB None
ERR11465802 Other lineage4.3.4.1;La1.7 None
ERR3283010 Other La1 None
ERR3283017 HR-TB None
ERR3283021 HR-TB None
ERR3283051 Other lineage4.9 None
ERR3283036 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3439432 Other None
ERR3283058 Other lineage4.9 None
ERR3470647 Other lineage3 None
ERR3445503 HR-TB None
ERR3468544 HR-TB None
ERR3797016 HR-TB None
ERR3797017 Other None
ERR3797024 Other lineage4.9 None
ERR3797014 Other None
ERR3797023 HR-TB La1.8.1 None
ERR3797043 HR-TB None
ERR3797047 HR-TB lineage4 None
ERR3797036 HR-TB None
ERR3804169 HR-TB lineage4.1.3 None
ERR3797044 Other None
ERR3797061 Other None
ERR3797071 Other lineage4.9 None
ERR3797069 Other None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR3797083 HR-TB None
ERR3799304 Other lineage6.1.1 None
ERR3804162 Sensitive lineage6.3.1 None
ERR3804155 Other lineage4.1.2.1 None
ERR4188350 HR-TB None
ERR400529 Other lineage3 None
ERR403298 HR-TB lineage4 None
ERR387051 HR-TB None
ERR4596910 Sensitive lineage4 None
ERR4407452 Sensitive lineage3 None
ERR4407463 HR-TB None
ERR4797037 Pre-XDR-TB lineage3.1.2 None
ERR4796584 Sensitive lineage1.2.2.2 None
ERR4769433 Pre-XDR-TB lineage4.9 None
ERR4796577 MDR-TB None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797285 MDR-TB lineage1.2.2.2 None
ERR4798139 Sensitive lineage1.1.2 None
ERR4798262 HR-TB La1 None
ERR4798406 HR-TB None
ERR4797201 Other lineage1.2.2.2 None
ERR4797588 MDR-TB lineage3 None
ERR4798504 Other lineage3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4798648 HR-TB lineage3.1.2 None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR4811022 HR-TB None
ERR4800341 Other lineage3 None
ERR4810741 HR-TB None
ERR12015083 Other lineage4.8;La3 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4811105 HR-TB None
ERR12268496 Sensitive lineage4.4.1.1 None
ERR4811142 MDR-TB None
ERR5917710 Other lineage4.1.2.1 None
ERR5336148 Other None
ERR5908228 Other lineage4.3.3 None
ERR6358837 HR-TB None
ERR6358755 Other lineage4.6.1.1 None
ERR6198317 Other La1.2 None
ERR6326069 Pre-XDR-TB lineage4.3.4.1 None
ERR6359045 HR-TB None
ERR6358991 HR-TB None
ERR7821126 Sensitive lineage1.1.3.2 None
ERR702406 HR-TB None
ERR736867 HR-TB None
ERR772255 MDR-TB lineage4.3.2 None
ERR702404 HR-TB None
ERR245758 Other lineage4.9.1 None
ERR736835 HR-TB None
ERR736865 HR-TB None
ERR736874 HR-TB None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR176557 Sensitive lineage4.3.4.1 None
SRR21733183 RR-TB lineage1.1.2 None
ERR176549 Other lineage4.3.4.2.1 None
ERR7821123 Other lineage1.1.3.2 None
ERR7821163 Other lineage2.2.1 None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR8976043 HR-TB None
ERR9117709 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9117805 Other lineage4.3.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9119096 Other lineage4.3.3 None
ERR9786443 Sensitive lineage4.8 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9786384 Sensitive lineage4.1.2.1 None
ERR9786421 Other lineage4.1.2.1 None
ERR9786440 Other lineage4.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786444 Sensitive lineage4.8 None
ERR9786569 Other lineage4.8 None
ERR9786617 Other lineage4.1.1 None
ERR9786604 Other None
ERR9786601 Other lineage4.1.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786682 Other lineage4.1.2.1 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786671 Other None
ERR9786694 Other lineage4.1.2.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9786843 Other None
ERR9787014 Other lineage6.1.1 None
ERR9787223 Sensitive lineage6.3.1 None
ERR9787197 Other None
ERR9787153 Other lineage6.1.3 None
ERR9787165 Other lineage6 None
ERR9787139 Other lineage6.3.1 None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
ERR987722 HR-TB None
ERR990545 Other lineage3 None
ERR9896144 Other lineage3 None
SRR069989 HR-TB lineage2 None
SRR10315551 Sensitive lineage2.2.1 None
SRR1162740 Other lineage4.1.2.1 None
SRR10808399 Sensitive lineage4 None
SRR10808668 Sensitive lineage2.2.1 None
SRR1169249 Other La3 None
SRR1165584 Other lineage4.1.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1167384 Other lineage4 None
SRR1169194 Other None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR1165423 Other lineage4.1.2.1 None
SRR1165506 Other lineage4.1.2.1 None
SRR1167055 Other lineage4.1.2.1 None
SRR1169306 Other None
SRR1172310 HR-TB None
SRR1172234 Other None
SRR1172146 Sensitive lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1172817 HR-TB None
SRR1172728 MDR-TB None
SRR1172844 MDR-TB lineage4.4.1.1 None
SRR1172857 MDR-TB None
SRR1173166 Other lineage4.9 None
SRR1172951 Other None
SRR1173153 HR-TB None
SRR1173118 Other None
SRR1173363 HR-TB None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173384 Other lineage4 None
SRR1173400 Other None
SRR1173562 HR-TB lineage4 None
SRR1173484 Other lineage4 None
SRR1174897 HR-TB None
SRR1173629 Other None
SRR1173778 Other None
SRR1173788 Other None
SRR1173633 HR-TB lineage4.9 None
SRR1173706 Other lineage4.9 None
SRR1173767 HR-TB lineage4.4.1.1 None
SRR1175049 RR-TB None
SRR1175052 HR-TB lineage4.9 None
SRR1175074 MDR-TB None
SRR1175090 Other lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR1180137 Other lineage2.2.1 None
SRR1181328 Other lineage2.2.1 None
SRR1181251 Other lineage2.2.1 None
SRR1180172 Other lineage2.2.1 None
SRR1180270 Other lineage2.2.1 None
SRR1181091 Other lineage2.2.1.1 None
SRR1181289 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR1183144 Other lineage2.2.1 None
SRR1183106 Other lineage2.2.1.1 None
SRR1184024 Other lineage2.2.1.1 None
SRR1183145 Other lineage2.2.1 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184294 HR-TB None
SRR1184372 MDR-TB None
SRR1184312 HR-TB lineage2.2.1 None
SRR1184329 MDR-TB lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR1196494 MDR-TB None
SRR1184381 MDR-TB None
SRR1184380 HR-TB None
SRR1184388 Other None
SRR1196474 HR-TB lineage3.1 None
SRR1196546 HR-TB None
SRR1196566 HR-TB None
SRR1196571 Pre-XDR-TB lineage4.3.3 None