Run ID: SRR13861596
Sample name:
Date: 03-04-2023 09:35:53
Number of reads: 1428964
Percentage reads mapped: 28.61
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.98 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472122 | n.277G>C | non_coding_transcript_exon_variant | 0.86 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5319 | p.Arg27Leu | missense_variant | 0.97 |
rpoB | 760867 | p.Gly354Asp | missense_variant | 0.95 |
rpoC | 762443 | c.-927G>C | upstream_gene_variant | 0.14 |
rpoC | 762470 | c.-900G>C | upstream_gene_variant | 0.15 |
rpoB | 762489 | p.Val895Gln | missense_variant | 0.16 |
rpoB | 762496 | c.2691delC | frameshift_variant | 0.86 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.14 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.17 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.2 |
rpoC | 764793 | p.Met475Arg | missense_variant | 0.94 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.17 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.16 |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.16 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.15 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.14 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.15 |
rpoC | 765007 | c.1638T>G | synonymous_variant | 0.13 |
rpoC | 765019 | c.1650A>G | synonymous_variant | 0.14 |
rpoC | 765022 | c.1653G>C | synonymous_variant | 0.14 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.15 |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.17 |
rpoC | 765814 | c.2445A>G | synonymous_variant | 0.16 |
rpoC | 766408 | c.3039C>T | synonymous_variant | 0.13 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.16 |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.16 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.18 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.17 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.18 |
rpoC | 766495 | c.3126C>T | synonymous_variant | 0.19 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.18 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.17 |
rpoC | 766531 | c.3162G>T | synonymous_variant | 0.17 |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.15 |
rpoC | 766563 | p.Thr1065Ser | missense_variant | 0.85 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.14 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.19 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.14 |
rpoC | 766978 | c.3609C>G | synonymous_variant | 0.14 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.17 |
rpoC | 767009 | c.3640_3642delTCGinsAGC | synonymous_variant | 0.17 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.17 |
rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 0.17 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.17 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.19 |
rpoC | 767074 | c.3705T>C | synonymous_variant | 0.17 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.13 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.15 |
rpoC | 767167 | c.3798C>G | synonymous_variant | 0.13 |
mmpL5 | 775976 | c.2505G>C | synonymous_variant | 0.95 |
mmpL5 | 776814 | p.Gln556Arg | missense_variant | 1.0 |
rplC | 800623 | c.-186A>C | upstream_gene_variant | 0.91 |
rplC | 800769 | c.-40A>T | upstream_gene_variant | 0.91 |
fbiC | 1302878 | c.-53C>G | upstream_gene_variant | 1.0 |
fbiC | 1303535 | p.Ser202Leu | missense_variant | 1.0 |
atpE | 1461256 | p.Met71Arg | missense_variant | 0.96 |
rrs | 1471836 | n.-10A>G | upstream_gene_variant | 1.0 |
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475333 | n.1676T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475369 | n.1712G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.17 |
katG | 2156157 | c.-46C>A | upstream_gene_variant | 1.0 |
PPE35 | 2168627 | p.Ile662Met | missense_variant | 1.0 |
Rv1979c | 2222100 | c.1065T>A | synonymous_variant | 1.0 |
pncA | 2289242 | c.-1T>C | upstream_gene_variant | 1.0 |
ribD | 2987205 | p.Ser123Ala | missense_variant | 1.0 |
ribD | 2987347 | p.Pro170Leu | missense_variant | 1.0 |
Rv3083 | 3448903 | p.Asp134His | missense_variant | 1.0 |
rpoA | 3877656 | c.852T>C | synonymous_variant | 0.16 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.13 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.14 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.14 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.14 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.14 |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.14 |
rpoA | 3878396 | c.112C>T | synonymous_variant | 0.14 |
clpC1 | 4039663 | p.Gly348Ser | missense_variant | 0.96 |
embC | 4240726 | c.864G>C | synonymous_variant | 0.13 |
embC | 4241256 | p.Arg465Thr | missense_variant | 1.0 |
embA | 4245137 | c.1905T>C | synonymous_variant | 0.13 |
embA | 4245149 | c.1917C>G | synonymous_variant | 0.13 |
embA | 4246449 | p.Val1073Phe | missense_variant | 1.0 |
embB | 4248035 | p.Val508Ile | missense_variant | 0.13 |
embB | 4248041 | p.Ala510Thr | missense_variant | 0.15 |
embB | 4248055 | c.1542G>C | synonymous_variant | 0.14 |
embB | 4248064 | c.1551G>C | synonymous_variant | 0.14 |
embB | 4248097 | c.1584C>G | synonymous_variant | 0.16 |
embB | 4248127 | c.1614G>C | synonymous_variant | 0.13 |
embB | 4248133 | c.1620C>G | synonymous_variant | 0.18 |
embB | 4248142 | c.1629T>C | synonymous_variant | 0.15 |
embB | 4248143 | c.1630T>C | synonymous_variant | 0.15 |
embB | 4248157 | c.1644A>G | synonymous_variant | 0.19 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.15 |
embB | 4248220 | c.1707A>G | synonymous_variant | 0.14 |
embB | 4248265 | c.1752C>T | synonymous_variant | 0.13 |
aftB | 4268192 | c.645G>C | synonymous_variant | 1.0 |