Rv0668 - c.3645G>C
Drug resistance types
20 Sensitive
7 RR-TB
122 HR-TB
26 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
127 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.2.2 | 1 |
| lineage2.2.1 | 14 |
| lineage4.9 | 39 |
| lineage4 | 14 |
| 112 | |
| lineage4.8 | 11 |
| lineage4.7 | 1 |
| lineage4.1.2.1 | 22 |
| lineage4;lineage1.1 | 1 |
| lineage3 | 9 |
| lineage4.9;lineage3.1.2.1 | 1 |
| lineage4.4.1.1 | 5 |
| lineage5.2 | 2 |
| lineage1.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3.3 | 7 |
| lineage3.1 | 4 |
| lineage1.2.1.2.1 | 3 |
| La2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.1.1.3 | 3 |
| La1 | 1 |
| La1.8.1 | 4 |
| lineage6.3.1 | 3 |
| lineage4.1.3 | 2 |
| lineage6.1.1 | 2 |
| La1.3 | 4 |
| lineage4.9;La1.3 | 1 |
| lineage3.1.2 | 2 |
| lineage1.2.2.2 | 1 |
| lineage2 | 3 |
| lineage4.8;La3 | 2 |
| lineage1.1.3.2 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage1.1.2 | 2 |
| lineage4.1 | 2 |
| lineage4.1.1 | 3 |
| lineage4.6.2.2 | 2 |
| lineage6 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.6.1.2 | 1 |
| lineage2.1 | 2 |
| lineage4.5 | 1 |
| lineage2.2 | 2 |
| lineage4.9;La3 | 1 |
| lineage2.2.1;La3 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage3;lineage2.2.1 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage4;lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 312 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR4819932 | Other | lineage4.7 | None | ERR4819280 | Sensitive | lineage4 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4819462 | Other | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR2517514 | Sensitive | lineage4.8 | None | ERR2446570 | Sensitive | lineage4.8 | nl | SRR5341470 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR4821578 | Other | lineage4.1.2.1 | None | ERR278594 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046066 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR3077978 | Other | lineage1.1 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR6785267 | Other | lineage2.2.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR294248 | HR-TB | None | SRR6789626 | Other | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077902 | Sensitive | lineage1.2.1.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | ERR323055 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | SRR7496517 | Other | None | ERR11466174 | Other | lineage4.8 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323043 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR036207 | Other | lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797071 | Other | lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797069 | Other | None | ERR4188350 | HR-TB | None | ERR3804162 | Sensitive | lineage6.3.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4407463 | HR-TB | None | ERR4407452 | Sensitive | lineage3 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4769514 | Other | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4797037 | Pre-XDR-TB | lineage3.1.2 | None | ERR4769555 | Other | La1.3 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798504 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR12268496 | Sensitive | lineage4.4.1.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6358837 | HR-TB | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR736865 | HR-TB | None | ERR702406 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736848 | HR-TB | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR8976043 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786443 | Sensitive | lineage4.8 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786569 | Other | lineage4.8 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR990545 | Other | lineage3 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787223 | Sensitive | lineage6.3.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172817 | HR-TB | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1175049 | RR-TB | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173788 | Other | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1196546 | HR-TB | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13837424 | Sensitive | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861326 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861646 | Other | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR1791696 | Other | La1.8.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR25827682 | Other | None | SRR8692790 | RR-TB | lineage4 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692894 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR26159043 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4813861 | Other | lineage4.3.3 | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675482 | HR-TB | None | ERR1035239 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675311 | Other | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4816999 | Other | None | ERR4815752 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4817037 | Other | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | ERR4816515 | Sensitive | lineage1.2.1.2.1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | ERR4815815 | Sensitive | lineage4 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR234659 | HR-TB | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2229143 | Other | lineage4.1.1 | None |
|---|
