TB-Profiler result

Run: SRR6046521
Summary

Run ID: SRR6046521

Sample name:

Date: 04-04-2023 12:18:32

Number of reads: 3239889

Percentage reads mapped: 72.42

Strain: lineage4.4.1.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.4 Euro-American S;T None 0.98
lineage4.4.1 Euro-American (S-type) S;T None 0.98
lineage4.4.1.1 Euro-American S;Orphans None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.73 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.15 kanamycin, capreomycin, aminoglycosides, amikacin
embB 4247580 p.Ala356Val missense_variant 0.13 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6670 c.-632G>C upstream_gene_variant 0.15
gyrA 6673 c.-629A>C upstream_gene_variant 0.16
gyrA 6676 c.-626T>G upstream_gene_variant 0.17
gyrA 6700 c.-602T>C upstream_gene_variant 0.16
gyrA 6703 c.-599G>C upstream_gene_variant 0.14
gyrA 6709 c.-593A>G upstream_gene_variant 0.14
gyrA 7141 c.-161T>C upstream_gene_variant 0.13
gyrA 7165 c.-137C>G upstream_gene_variant 0.15
gyrA 7178 c.-124T>C upstream_gene_variant 0.16
gyrA 7186 c.-116C>G upstream_gene_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7406 c.105G>C synonymous_variant 0.15
gyrA 7427 c.126G>C synonymous_variant 0.23
gyrA 7442 c.141G>C synonymous_variant 0.21
gyrA 7451 c.150C>G synonymous_variant 0.18
gyrA 7457 c.156T>C synonymous_variant 0.17
gyrA 7475 c.174A>G synonymous_variant 0.22
gyrA 7480 p.Phe60Tyr missense_variant 0.22
gyrA 7484 c.183T>C synonymous_variant 0.2
gyrA 7514 c.213C>G synonymous_variant 0.23
gyrA 7523 c.222C>A synonymous_variant 0.23
gyrA 7532 c.231T>C synonymous_variant 0.2
gyrA 7541 c.240C>G synonymous_variant 0.23
gyrA 7547 c.246C>T synonymous_variant 0.24
gyrA 7562 c.261C>T synonymous_variant 0.21
gyrA 7571 c.270G>C synonymous_variant 0.22
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7595 c.294C>G synonymous_variant 0.17
gyrA 7601 c.300C>G synonymous_variant 0.17
gyrA 7622 c.321C>T synonymous_variant 0.2
gyrA 7625 c.324G>C synonymous_variant 0.22
gyrA 7631 c.330G>C synonymous_variant 0.24
gyrA 7637 c.336C>G synonymous_variant 0.23
gyrA 7658 c.357A>G synonymous_variant 0.21
gyrA 7664 c.363T>C synonymous_variant 0.22
gyrA 7670 c.369A>G synonymous_variant 0.23
gyrA 7676 c.375G>C synonymous_variant 0.24
gyrA 7683 c.382_384delAGGinsCGC synonymous_variant 0.22
gyrA 7694 c.393A>G synonymous_variant 0.24
gyrA 7697 c.396C>A synonymous_variant 0.23
gyrA 7710 c.409_411delTTGinsCTC synonymous_variant 0.2
gyrA 7715 c.414G>C synonymous_variant 0.18
gyrA 7721 c.420G>A synonymous_variant 0.19
gyrA 7725 c.424C>T synonymous_variant 0.2
gyrA 7728 c.427_429delAGGinsCGT synonymous_variant 0.19
gyrA 8442 c.1141C>T synonymous_variant 0.13
gyrA 8561 c.1260A>C synonymous_variant 0.13
gyrA 8588 c.1287G>A synonymous_variant 0.14
gyrA 8603 c.1302A>G synonymous_variant 0.15
gyrA 8619 c.1318T>C synonymous_variant 0.15
gyrA 8624 c.1323G>C synonymous_variant 0.15
gyrA 8636 c.1335A>C synonymous_variant 0.16
gyrA 8642 c.1341A>G synonymous_variant 0.16
gyrA 8672 c.1371A>G synonymous_variant 0.16
gyrA 8740 p.Arg480His missense_variant 0.15
gyrA 8747 c.1446A>G synonymous_variant 0.19
gyrA 8750 c.1449C>G synonymous_variant 0.19
gyrA 8751 p.Ala484Ser missense_variant 0.19
gyrA 8762 c.1461G>C synonymous_variant 0.17
gyrA 8767 p.Arg489Lys missense_variant 0.19
gyrA 8780 p.Asp493Glu missense_variant 0.21
gyrA 8786 c.1485T>C synonymous_variant 0.26
gyrA 8801 c.1500G>C synonymous_variant 0.31
gyrA 8807 c.1506C>T synonymous_variant 0.28
gyrA 8810 c.1509A>G synonymous_variant 0.28
gyrA 8816 c.1515C>G synonymous_variant 0.29
gyrA 8818 p.Ser506Asn missense_variant 0.28
gyrA 8828 c.1527T>C synonymous_variant 0.27
gyrA 8829 c.1528T>C synonymous_variant 0.27
gyrA 8852 c.1551T>C synonymous_variant 0.32
gyrA 8867 c.1566A>G synonymous_variant 0.25
gyrA 8870 c.1569G>C synonymous_variant 0.25
gyrA 8873 c.1572A>C synonymous_variant 0.24
gyrA 8891 c.1590G>A synonymous_variant 0.2
gyrA 8897 c.1596T>C synonymous_variant 0.19
gyrA 8903 c.1602T>C synonymous_variant 0.23
gyrA 8933 c.1632G>C synonymous_variant 0.19
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.19
gyrA 8966 c.1665C>G synonymous_variant 0.18
gyrA 8967 p.Ala556Arg missense_variant 0.17
gyrA 9119 c.1818A>G synonymous_variant 0.15
gyrA 9122 c.1821C>A synonymous_variant 0.14
gyrA 9143 c.1842T>C synonymous_variant 0.15
gyrA 9304 p.Gly668Asp missense_variant 0.95
gyrA 9726 p.Gly809Ser missense_variant 0.98
mshA 575770 c.423G>A synonymous_variant 0.14
mshA 575771 p.Val142Phe missense_variant 0.13
mshA 575779 c.432A>G synonymous_variant 0.17
mshA 575782 c.435G>C synonymous_variant 0.16
mshA 575809 c.462C>T synonymous_variant 0.22
mshA 575812 c.465C>T synonymous_variant 0.23
mshA 575821 c.474G>C synonymous_variant 0.28
mshA 575824 c.477T>G synonymous_variant 0.29
mshA 575830 c.483C>G synonymous_variant 0.31
mshA 575833 c.486C>G synonymous_variant 0.31
mshA 575845 c.498C>T synonymous_variant 0.29
mshA 575884 c.537G>C synonymous_variant 0.31
mshA 575887 c.540G>C synonymous_variant 0.29
mshA 575893 c.546C>G synonymous_variant 0.29
mshA 575896 c.549G>C synonymous_variant 0.31
mshA 575908 c.561A>G synonymous_variant 0.23
mshA 575917 p.Asp190Glu missense_variant 0.19
mshA 575920 c.573C>G synonymous_variant 0.21
mshA 575924 p.Gly193Ser missense_variant 0.17
mshA 575944 c.597T>C synonymous_variant 0.15
ccsA 620295 c.405G>T synonymous_variant 0.13
ccsA 620310 c.420C>T synonymous_variant 0.15
ccsA 620317 p.Val143Leu missense_variant 0.15
ccsA 620340 c.450C>G synonymous_variant 0.14
ccsA 620346 c.456C>G synonymous_variant 0.15
rpoB 760139 c.333A>G synonymous_variant 0.15
rpoB 760142 c.336C>G synonymous_variant 0.14
rpoB 760181 c.375T>C synonymous_variant 0.2
rpoB 760184 c.378A>G synonymous_variant 0.19
rpoB 760196 c.390C>G synonymous_variant 0.17
rpoB 760223 c.417T>C synonymous_variant 0.14
rpoB 760340 c.534G>T synonymous_variant 0.13
rpoB 760361 c.555T>C synonymous_variant 0.17
rpoB 760370 c.564C>G synonymous_variant 0.17
rpoB 760376 p.Asp190Glu missense_variant 0.15
rpoB 760380 p.Thr192Leu missense_variant 0.15
rpoB 760406 c.600G>C synonymous_variant 0.19
rpoB 760412 c.606C>G synonymous_variant 0.19
rpoB 760424 c.618C>G synonymous_variant 0.21
rpoB 760430 c.624T>C synonymous_variant 0.21
rpoB 760475 c.669A>G synonymous_variant 0.23
rpoB 760481 c.675G>C synonymous_variant 0.2
rpoB 760484 c.678A>G synonymous_variant 0.19
rpoB 760522 p.Ser239Asn missense_variant 0.14
rpoB 760532 c.726T>C synonymous_variant 0.14
rpoB 760591 p.Val262Ala missense_variant 0.23
rpoB 760611 c.805T>C synonymous_variant 0.21
rpoB 760634 c.828T>C synonymous_variant 0.18
rpoB 760661 c.855A>C synonymous_variant 0.15
rpoB 760670 c.864G>C synonymous_variant 0.15
rpoB 760674 c.868T>C synonymous_variant 0.15
rpoB 760679 c.873A>G synonymous_variant 0.14
rpoB 760683 c.877T>C synonymous_variant 0.15
rpoB 760718 c.912C>T synonymous_variant 0.18
rpoB 760724 c.918T>C synonymous_variant 0.18
rpoB 760730 c.924T>C synonymous_variant 0.16
rpoB 760751 c.945G>C synonymous_variant 0.15
rpoB 760757 c.951T>C synonymous_variant 0.14
rpoB 760759 p.Val318Ala missense_variant 0.15
rpoB 760769 c.963C>G synonymous_variant 0.16
rpoB 760775 c.969G>C synonymous_variant 0.16
rpoB 760776 c.970_972delTCGinsAGC synonymous_variant 0.16
rpoB 760793 c.987A>G synonymous_variant 0.14
rpoB 760805 c.999G>C synonymous_variant 0.15
rpoB 760946 c.1140A>G synonymous_variant 0.18
rpoB 760982 c.1176G>C synonymous_variant 0.2
rpoB 760985 c.1179G>C synonymous_variant 0.21
rpoB 760991 c.1185G>C synonymous_variant 0.24
rpoB 761006 c.1200C>G synonymous_variant 0.29
rpoB 761015 c.1209G>C synonymous_variant 0.25
rpoB 761021 c.1215G>C synonymous_variant 0.25
rpoB 761027 c.1221A>G synonymous_variant 0.26
rpoB 761036 c.1230G>C synonymous_variant 0.23
rpoB 761037 c.1231T>C synonymous_variant 0.25
rpoB 761057 c.1251G>C synonymous_variant 0.3
rpoB 761102 c.1296A>G synonymous_variant 0.29
rpoB 761129 c.1323G>C synonymous_variant 0.2
rpoB 761132 c.1326G>T synonymous_variant 0.2
rpoB 761133 c.1327T>C synonymous_variant 0.23
rpoB 761150 c.1344A>C synonymous_variant 0.22
rpoB 761153 c.1347G>C synonymous_variant 0.19
rpoB 761165 c.1359G>C synonymous_variant 0.22
rpoB 761180 c.1374A>C synonymous_variant 0.16
rpoB 761189 c.1383T>C synonymous_variant 0.15
rpoB 761195 c.1389G>C synonymous_variant 0.14
rpoB 761255 c.1449T>G synonymous_variant 0.14
rpoB 761261 c.1455G>T synonymous_variant 0.16
rpoB 761306 c.1500C>G synonymous_variant 0.18
rpoB 761312 c.1506G>C synonymous_variant 0.16
rpoB 761327 c.1521A>G synonymous_variant 0.17
rpoB 761330 c.1524G>C synonymous_variant 0.18
rpoB 761354 c.1548C>T synonymous_variant 0.21
rpoB 761360 c.1554T>C synonymous_variant 0.19
rpoB 761362 p.Ser519Thr missense_variant 0.18
rpoB 761375 c.1569G>C synonymous_variant 0.14
rpoB 761408 c.1602G>C synonymous_variant 0.18
rpoB 761414 c.1608A>G synonymous_variant 0.18
rpoB 761423 c.1617T>C synonymous_variant 0.15
rpoB 761438 c.1632G>C synonymous_variant 0.14
rpoB 761439 p.Asp545Lys missense_variant 0.14
rpoB 761444 c.1638T>C synonymous_variant 0.14
rpoB 761447 c.1641C>G synonymous_variant 0.14
rpoB 761452 p.Val549Asp missense_variant 0.13
rpoB 761457 p.Pro551Ser missense_variant 0.14
rpoB 761510 c.1704T>C synonymous_variant 0.19
rpoB 761537 c.1731C>G synonymous_variant 0.15
rpoB 761570 c.1764T>C synonymous_variant 0.18
rpoB 761573 c.1767C>G synonymous_variant 0.17
rpoB 761579 c.1773G>C synonymous_variant 0.16
rpoB 761588 c.1782C>T synonymous_variant 0.16
rpoB 761606 c.1800C>G synonymous_variant 0.15
rpoB 761612 c.1806G>C synonymous_variant 0.14
rpoB 761615 c.1809A>C synonymous_variant 0.15
rpoB 761636 c.1830G>T synonymous_variant 0.16
rpoB 761727 p.Ser641Gly missense_variant 0.14
rpoB 761728 c.1923dupC frameshift_variant 0.14
rpoB 761732 c.1926C>G synonymous_variant 0.13
rpoB 761773 p.His656Pro missense_variant 0.14
rpoB 761778 p.Asn658Asp missense_variant 0.14
rpoB 762008 c.2202C>T synonymous_variant 0.21
rpoB 762014 c.2208C>T synonymous_variant 0.2
rpoB 762017 c.2211A>G synonymous_variant 0.2
rpoB 762053 c.2247T>C synonymous_variant 0.27
rpoB 762062 c.2256T>C synonymous_variant 0.32
rpoB 762065 c.2259T>C synonymous_variant 0.34
rpoB 762083 c.2277T>C synonymous_variant 0.19
rpoB 762086 c.2280G>C synonymous_variant 0.18
rpoB 762101 c.2295C>G synonymous_variant 0.24
rpoB 762114 p.Ile770Val missense_variant 0.25
rpoB 762131 c.2325C>G synonymous_variant 0.22
rpoB 762140 c.2334G>C synonymous_variant 0.19
rpoB 762143 c.2337T>C synonymous_variant 0.22
rpoB 762149 c.2343G>C synonymous_variant 0.22
rpoB 762167 c.2361T>C synonymous_variant 0.17
rpoB 762176 c.2370T>C synonymous_variant 0.19
rpoB 762185 c.2379G>C synonymous_variant 0.16
rpoB 762206 c.2400C>G synonymous_variant 0.17
rpoB 762293 c.2487T>C synonymous_variant 0.19
rpoB 762317 c.2511A>G synonymous_variant 0.18
rpoB 762329 c.2523G>C synonymous_variant 0.21
rpoB 762338 c.2532T>C synonymous_variant 0.2
rpoB 762347 c.2541T>C synonymous_variant 0.21
rpoB 762362 p.Glu852Asp missense_variant 0.21
rpoB 762369 c.2563T>C synonymous_variant 0.23
rpoC 762398 c.-972T>C upstream_gene_variant 0.16
rpoC 762401 c.-969G>C upstream_gene_variant 0.17
rpoC 762404 c.-966T>C upstream_gene_variant 0.2
rpoC 762410 c.-960T>C upstream_gene_variant 0.24
rpoC 762416 c.-954A>G upstream_gene_variant 0.25
rpoC 762419 c.-951C>G upstream_gene_variant 0.27
rpoC 762434 c.-936T>C upstream_gene_variant 0.24
rpoC 762449 c.-921C>A upstream_gene_variant 0.23
rpoC 762467 c.-903C>T upstream_gene_variant 0.22
rpoC 762488 c.-882G>C upstream_gene_variant 0.19
rpoB 762489 p.Val895Gln missense_variant 0.18
rpoC 762509 c.-861T>G upstream_gene_variant 0.22
rpoB 762510 p.Ala902Pro missense_variant 0.22
rpoC 762521 c.-849C>T upstream_gene_variant 0.2
rpoC 762533 c.-837T>C upstream_gene_variant 0.17
rpoC 762536 c.-834T>C upstream_gene_variant 0.16
rpoC 762537 c.-833T>C upstream_gene_variant 0.16
rpoC 762551 c.-819C>G upstream_gene_variant 0.14
rpoC 762758 c.-612G>C upstream_gene_variant 0.15
rpoC 762782 c.-588T>C upstream_gene_variant 0.19
rpoB 762785 p.Asp993Glu missense_variant 0.19
rpoC 762788 c.-582G>C upstream_gene_variant 0.17
rpoB 762789 p.Leu995Met missense_variant 0.17
rpoC 762794 c.-576C>G upstream_gene_variant 0.17
rpoB 762799 p.Ala998Gly missense_variant 0.16
rpoB 762810 p.Ala1002Ser missense_variant 0.15
rpoB 762813 p.Met1003Val missense_variant 0.15
rpoC 762818 c.-552C>G upstream_gene_variant 0.2
rpoC 762827 c.-543G>C upstream_gene_variant 0.24
rpoC 762857 c.-513C>G upstream_gene_variant 0.2
rpoC 762860 c.-510G>C upstream_gene_variant 0.2
rpoC 762863 c.-507T>C upstream_gene_variant 0.21
rpoC 762929 c.-441G>C upstream_gene_variant 0.14
rpoC 762989 c.-381G>C upstream_gene_variant 0.19
rpoC 762995 c.-375G>T upstream_gene_variant 0.14
rpoC 763013 c.-357C>G upstream_gene_variant 0.14
rpoC 763025 c.-345C>T upstream_gene_variant 0.14
rpoC 763028 c.-342T>C upstream_gene_variant 0.19
rpoC 763034 c.-336C>G upstream_gene_variant 0.13
rpoC 763040 c.-330C>G upstream_gene_variant 0.15
rpoC 763070 c.-300T>C upstream_gene_variant 0.24
rpoC 763085 c.-285C>G upstream_gene_variant 0.21
rpoC 763115 c.-255T>C upstream_gene_variant 0.18
rpoC 763136 c.-234C>T upstream_gene_variant 0.15
rpoC 763148 c.-222G>C upstream_gene_variant 0.17
rpoC 763158 c.-212C>T upstream_gene_variant 0.19
rpoC 763166 c.-204A>G upstream_gene_variant 0.2
rpoC 763528 c.159G>A synonymous_variant 0.17
rpoC 763546 c.177A>G synonymous_variant 0.2
rpoC 763570 c.201G>C synonymous_variant 0.2
rpoC 763573 c.204G>C synonymous_variant 0.2
rpoC 763594 c.225C>T synonymous_variant 0.2
rpoC 763603 c.234C>T synonymous_variant 0.23
rpoC 763636 c.267T>C synonymous_variant 0.16
rpoC 763660 c.291T>G synonymous_variant 0.15
rpoC 763675 c.306C>G synonymous_variant 0.13
rpoC 763774 c.405G>C synonymous_variant 0.14
rpoC 763807 c.438T>C synonymous_variant 0.26
rpoC 763816 c.447C>G synonymous_variant 0.24
rpoC 763835 p.Ala156Met missense_variant 0.26
rpoC 763853 p.Val162Ile missense_variant 0.24
rpoC 763858 c.489A>G synonymous_variant 0.24
rpoC 763872 p.Gly168Ala missense_variant 0.22
rpoC 763876 p.Glu169Asp missense_variant 0.22
rpoC 763879 c.510A>G synonymous_variant 0.22
rpoC 763888 c.519G>C synonymous_variant 0.25
rpoC 763891 c.522G>C synonymous_variant 0.23
rpoC 763894 c.525A>G synonymous_variant 0.24
rpoC 763900 c.531G>C synonymous_variant 0.27
rpoC 763936 c.567C>G synonymous_variant 0.29
rpoC 763939 c.570G>A synonymous_variant 0.26
rpoC 763942 c.573C>G synonymous_variant 0.24
rpoC 763948 c.579G>A synonymous_variant 0.2
rpoC 763949 c.580C>A synonymous_variant 0.19
rpoC 763954 c.585C>G synonymous_variant 0.21
rpoC 763963 c.594C>T synonymous_variant 0.19
rpoC 764098 c.729A>G synonymous_variant 0.14
rpoC 764101 c.732C>G synonymous_variant 0.14
rpoC 764102 p.Val245Ile missense_variant 0.14
rpoC 764112 p.Tyr248Phe missense_variant 0.15
rpoC 764116 c.747C>T synonymous_variant 0.14
rpoC 764131 c.762T>C synonymous_variant 0.16
rpoC 764140 c.771C>T synonymous_variant 0.17
rpoC 764188 c.819A>G synonymous_variant 0.18
rpoC 764195 p.Ser276Ile missense_variant 0.17
rpoC 764203 c.834G>C synonymous_variant 0.17
rpoC 764206 c.837T>C synonymous_variant 0.17
rpoC 764215 c.846A>G synonymous_variant 0.2
rpoC 764236 c.867G>A synonymous_variant 0.17
rpoC 764248 c.879C>G synonymous_variant 0.17
rpoC 764257 c.888G>C synonymous_variant 0.18
rpoC 764266 c.897T>C synonymous_variant 0.18
rpoC 764269 c.900G>C synonymous_variant 0.15
rpoC 764272 c.903G>C synonymous_variant 0.2
rpoC 764278 c.909A>G synonymous_variant 0.2
rpoC 764338 c.969G>A synonymous_variant 0.18
rpoC 764353 c.984G>C synonymous_variant 0.18
rpoC 764752 c.1383G>C synonymous_variant 0.17
rpoC 764764 c.1395T>C synonymous_variant 0.19
rpoC 764809 c.1440C>T synonymous_variant 0.16
rpoC 764815 c.1446A>G synonymous_variant 0.15
rpoC 764932 c.1563C>A synonymous_variant 0.15
rpoC 764935 c.1566T>C synonymous_variant 0.15
rpoC 764948 c.1579T>C synonymous_variant 0.19
rpoC 764968 c.1599T>C synonymous_variant 0.2
rpoC 764995 c.1626C>G synonymous_variant 0.18
rpoC 765019 c.1650A>G synonymous_variant 0.25
rpoC 765034 c.1665T>C synonymous_variant 0.2
rpoC 765040 c.1671T>C synonymous_variant 0.19
rpoC 765041 c.1672T>C synonymous_variant 0.17
rpoC 765047 c.1678T>C synonymous_variant 0.15
rpoC 765053 c.1684_1685delTCinsAG synonymous_variant 0.14
rpoC 765383 p.Met672Leu missense_variant 0.14
rpoC 765404 p.Leu679Val missense_variant 0.17
rpoC 765409 c.2040T>C synonymous_variant 0.15
rpoC 765421 c.2052C>G synonymous_variant 0.15
rpoC 765478 c.2109T>C synonymous_variant 0.18
rpoC 765499 c.2130C>G synonymous_variant 0.23
rpoC 765529 c.2160C>T synonymous_variant 0.22
rpoC 765541 c.2172C>G synonymous_variant 0.19
rpoC 765553 c.2184C>T synonymous_variant 0.18
rpoC 765556 c.2187G>C synonymous_variant 0.18
rpoC 765559 c.2190G>C synonymous_variant 0.18
rpoC 765580 c.2211G>C synonymous_variant 0.2
rpoC 765613 p.His748Gln missense_variant 0.23
rpoC 765625 c.2256C>G synonymous_variant 0.25
rpoC 765631 p.Asp754Glu missense_variant 0.24
rpoC 765700 c.2331T>C synonymous_variant 0.27
rpoC 765734 c.2365T>C synonymous_variant 0.2
rpoC 765739 c.2370G>T synonymous_variant 0.17
rpoC 765811 c.2442T>C synonymous_variant 0.13
rpoC 765883 c.2514C>G synonymous_variant 0.14
rpoC 765886 c.2517C>G synonymous_variant 0.15
rpoC 765892 c.2523T>C synonymous_variant 0.16
rpoC 765937 c.2568T>C synonymous_variant 0.15
rpoC 765967 c.2598C>T synonymous_variant 0.15
rpoC 765982 c.2613C>G synonymous_variant 0.2
rpoC 765994 c.2625A>T synonymous_variant 0.16
rpoC 766010 p.Ser881Thr missense_variant 0.13
rpoC 766027 c.2658G>C synonymous_variant 0.13
rpoC 766030 c.2661C>G synonymous_variant 0.14
rpoC 766043 p.Gln892Glu missense_variant 0.15
rpoC 766054 c.2685C>G synonymous_variant 0.16
rpoC 766082 p.Ala905Gln missense_variant 0.14
rpoC 766540 p.Asp1057Glu missense_variant 0.15
rpoC 766630 c.3261G>C synonymous_variant 0.15
rpoC 766660 c.3291G>C synonymous_variant 0.14
rpoC 766672 c.3303T>C synonymous_variant 0.14
rpoC 766673 p.Gly1102Asn missense_variant 0.15
rpoC 766726 c.3357T>C synonymous_variant 0.19
rpoC 766738 c.3369G>C synonymous_variant 0.16
rpoC 766774 c.3405T>C synonymous_variant 0.15
rpoC 766801 c.3432C>G synonymous_variant 0.14
rpoC 766804 c.3435A>G synonymous_variant 0.15
rpoC 766861 c.3492G>C synonymous_variant 0.2
rpoC 766864 c.3495G>C synonymous_variant 0.21
rpoC 766876 c.3507C>T synonymous_variant 0.22
rpoC 766882 c.3513C>T synonymous_variant 0.22
rpoC 766894 c.3525T>C synonymous_variant 0.25
rpoC 766895 c.3526T>C synonymous_variant 0.24
rpoC 766900 c.3531T>C synonymous_variant 0.26
rpoC 766933 c.3564A>G synonymous_variant 0.27
rpoC 766945 c.3576A>G synonymous_variant 0.29
rpoC 766963 c.3594T>C synonymous_variant 0.32
rpoC 766972 c.3603G>C synonymous_variant 0.28
rpoC 766996 c.3627C>T synonymous_variant 0.24
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.24
rpoC 767014 c.3645G>C synonymous_variant 0.23
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.23
rpoC 767059 c.3690T>G synonymous_variant 0.2
rpoC 767062 c.3693C>A synonymous_variant 0.21
rpoC 767098 c.3729T>C synonymous_variant 0.13
rpoC 767134 c.3765C>A synonymous_variant 0.13
rpoC 767181 p.Ala1271Glu missense_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776685 p.Ser599Leu missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800612 c.-197A>G upstream_gene_variant 0.14
fbiC 1304142 c.1212G>C synonymous_variant 0.16
fbiC 1304161 p.Arg411Ser missense_variant 0.14
fbiC 1304184 c.1254G>C synonymous_variant 0.14
fbiC 1304187 c.1257T>C synonymous_variant 0.14
fbiC 1304691 c.1761G>C synonymous_variant 0.15
fbiC 1304694 c.1764A>C synonymous_variant 0.16
fbiC 1304703 c.1773C>G synonymous_variant 0.21
fbiC 1304711 p.Ala594Glu missense_variant 0.2
fbiC 1304715 c.1785G>C synonymous_variant 0.18
fbiC 1304724 c.1794A>G synonymous_variant 0.16
fbiC 1304727 c.1797A>G synonymous_variant 0.16
fbiC 1304739 c.1809C>T synonymous_variant 0.15
fbiC 1304817 c.1887T>C synonymous_variant 0.14
fbiC 1304875 p.Ile649Val missense_variant 0.15
fbiC 1304891 p.Ile654Thr missense_variant 0.15
fbiC 1304893 p.Gly655Ser missense_variant 0.14
fbiC 1304958 c.2028T>G synonymous_variant 0.14
fbiC 1304983 c.2053C>T synonymous_variant 0.16
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.19
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.18
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.17
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.17
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.42
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.42
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.29
rrs 1472029 n.184C>T non_coding_transcript_exon_variant 0.29
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.29
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.29
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.29
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.29
rrs 1472044 n.199G>T non_coding_transcript_exon_variant 0.29
rrs 1472045 n.200T>A non_coding_transcript_exon_variant 0.29
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.33
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.33
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.4
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.83
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.27
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.5
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.6
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.67
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.36
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.87
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.43
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.32
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.39
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.48
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.15
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.76
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.88
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.71
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.82
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.5
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.75
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.5
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 0.5
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.75
rrs 1472412 n.567A>C non_coding_transcript_exon_variant 0.33
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.33
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.33
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.33
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.68
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.14
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.78
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.78
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.8
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.8
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.82
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.8
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.17
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.81
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.85
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.79
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.8
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.8
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.16
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.16
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.98
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.77
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.2
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.8
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.7
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.18
rrs 1472687 n.843dupT non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.92
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.18
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.82
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.76
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.24
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.75
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.75
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.75
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.14
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.67
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.28
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.71
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.69
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.27
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.36
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.5
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.64
rrs 1472923 n.1078G>A non_coding_transcript_exon_variant 0.14
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.21
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.57
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.21
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.79
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.79
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.13
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.67
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.12
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.18
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.18
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.67
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.47
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.47
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.4
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.23
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.38
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.2
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.2
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.2
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.43
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.19
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.71
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.65
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.16
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.21
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.14
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.2
rrs 1473199 n.1356delA non_coding_transcript_exon_variant 0.14
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.15
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.23
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.34
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.38
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.29
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.26
rrs 1473288 n.1443C>G non_coding_transcript_exon_variant 0.22
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.67
rrs 1473293 n.1449A>G non_coding_transcript_exon_variant 0.16
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.24
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.26
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.36
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.17
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.45
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.5
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.57
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.67
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.5
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.5
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.5
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.5
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.5
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.5
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.5
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.5
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.5
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.5
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.5
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.5
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.4
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.17
rrl 1474228 n.571T>C non_coding_transcript_exon_variant 0.14
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.83
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.17
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.17
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.43
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.29
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.29
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.6
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.6
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.5
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.5
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.5
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.75
rrl 1474483 n.826C>T non_coding_transcript_exon_variant 0.67
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 1.0
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.67
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.67
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 1.0
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.33
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.33
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 1.0
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.67
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.67
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.75
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.22
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.18
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 1.0
rrl 1474732 n.1075A>T non_coding_transcript_exon_variant 0.16
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.83
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.8
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.18
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.8
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 1.0
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.8
rrl 1474783 n.1126G>T non_coding_transcript_exon_variant 0.2
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.17
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.83
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.83
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.82
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.72
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.85
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.69
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.79
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.71
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.71
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.5
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 0.5
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 1.0
rrl 1474961 n.1304T>G non_coding_transcript_exon_variant 1.0
rrl 1474963 n.1306G>A non_coding_transcript_exon_variant 1.0
rrl 1474964 n.1307T>C non_coding_transcript_exon_variant 1.0
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>T non_coding_transcript_exon_variant 1.0
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.5
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.5
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.5
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 1.0
rrl 1475552 n.1895G>C non_coding_transcript_exon_variant 0.5
rrl 1475573 n.1916G>T non_coding_transcript_exon_variant 0.4
rrl 1475574 n.1917C>G non_coding_transcript_exon_variant 0.6
rrl 1475576 n.1919C>T non_coding_transcript_exon_variant 0.4
rrl 1475591 n.1934G>T non_coding_transcript_exon_variant 0.4
rrl 1475596 n.1939G>A non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.38
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.62
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.38
rrl 1475704 n.2047C>T non_coding_transcript_exon_variant 0.25
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.35
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.39
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.33
rrl 1475717 n.2060C>G non_coding_transcript_exon_variant 0.33
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.7
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.17
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.58
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.14
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.21
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.57
rrl 1475783 n.2126T>G non_coding_transcript_exon_variant 0.3
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.46
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.46
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.52
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.59
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.38
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.34
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.2
rrl 1475874 n.2217C>T non_coding_transcript_exon_variant 0.23
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.44
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.93
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.72
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.43
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.38
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.81
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.81
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.19
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.48
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.83
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.73
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.73
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.45
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.71
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.29
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.6
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.67
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.67
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.42
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.73
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.62
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.5
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.5
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.5
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.4
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.4
rrl 1476116 n.2459A>G non_coding_transcript_exon_variant 0.4
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.29
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.18
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.36
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.23
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.33
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.4
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.36
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.21
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.58
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.33
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.23
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.5
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.5
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.4
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.25
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.33
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.4
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.67
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.67
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.4
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.2
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.72
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.72
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.73
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.73
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.69
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.75
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.81
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.79
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.15
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.7
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.74
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.73
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.74
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.69
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.58
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.67
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.73
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.74
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.7
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.72
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.71
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.73
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.71
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.15
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.63
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.66
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.17
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.64
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.69
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.55
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.83
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.72
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.48
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.28
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.83
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.72
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.25
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.25
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.2
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.2
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.27
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.23
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.38
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.38
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.14
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.23
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.23
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.31
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.23
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.27
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.2
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.7
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.7
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.64
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.67
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.67
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.5
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.47
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.31
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.31
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.31
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.31
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.29
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.23
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.23
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.25
rrl 1476755 n.3098G>A non_coding_transcript_exon_variant 0.14
rpsA 1833568 c.27G>C synonymous_variant 0.14
rpsA 1833589 c.48A>T synonymous_variant 0.14
rpsA 1833595 c.54T>C synonymous_variant 0.15
rpsA 1833661 c.120A>G synonymous_variant 0.2
rpsA 1833667 c.126C>G synonymous_variant 0.2
rpsA 1833721 c.180A>G synonymous_variant 0.2
rpsA 1833724 c.183C>G synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.19
rpsA 1833742 c.201A>G synonymous_variant 0.16
rpsA 1833745 c.204G>C synonymous_variant 0.18
rpsA 1833748 c.207C>G synonymous_variant 0.18
rpsA 1833787 c.246C>G synonymous_variant 0.2
rpsA 1833790 c.249T>C synonymous_variant 0.22
rpsA 1833802 c.261A>G synonymous_variant 0.19
rpsA 1833811 c.270G>T synonymous_variant 0.16
rpsA 1833847 c.306C>G synonymous_variant 0.14
rpsA 1833874 c.333T>C synonymous_variant 0.19
rpsA 1833886 c.345C>G synonymous_variant 0.2
rpsA 1833928 c.387G>C synonymous_variant 0.19
rpsA 1833940 c.399C>G synonymous_variant 0.18
rpsA 1833971 c.430C>T synonymous_variant 0.18
rpsA 1833979 c.438T>C synonymous_variant 0.15
rpsA 1834000 c.459G>C synonymous_variant 0.14
rpsA 1834021 c.480C>T synonymous_variant 0.17
rpsA 1834030 c.489C>G synonymous_variant 0.16
rpsA 1834222 c.681T>C synonymous_variant 0.14
rpsA 1834234 c.693G>C synonymous_variant 0.16
rpsA 1834249 c.708T>C synonymous_variant 0.16
rpsA 1834261 c.720A>G synonymous_variant 0.16
rpsA 1834264 c.723G>C synonymous_variant 0.16
rpsA 1834303 c.762T>C synonymous_variant 0.23
rpsA 1834306 c.765T>C synonymous_variant 0.28
rpsA 1834348 c.807T>C synonymous_variant 0.17
rpsA 1834366 c.825A>G synonymous_variant 0.17
rpsA 1834396 c.855G>C synonymous_variant 0.19
rpsA 1834411 c.870T>C synonymous_variant 0.17
rpsA 1834417 c.876G>C synonymous_variant 0.16
rpsA 1834423 c.882G>C synonymous_variant 0.15
rpsA 1834435 c.894G>C synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918036 p.Arg33Ser missense_variant 0.15
ndh 2102990 p.Val18Ala missense_variant 1.0
katG 2155716 c.396T>G synonymous_variant 0.15
katG 2155722 c.390G>C synonymous_variant 0.14
PPE35 2169840 p.Gly258Asp missense_variant 1.0
PPE35 2169914 c.699C>A synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518705 c.591T>C synonymous_variant 0.14
kasA 2518711 c.597A>G synonymous_variant 0.16
kasA 2518714 c.600A>C synonymous_variant 0.16
kasA 2518744 c.630C>T synonymous_variant 0.14
kasA 2518768 c.654C>T synonymous_variant 0.17
kasA 2518777 c.663C>T synonymous_variant 0.15
kasA 2518783 c.669T>C synonymous_variant 0.14
kasA 2518789 c.675G>C synonymous_variant 0.15
kasA 2518792 c.678C>A synonymous_variant 0.16
kasA 2518795 c.681C>G synonymous_variant 0.15
kasA 2519062 c.948T>G synonymous_variant 0.13
kasA 2519068 c.954C>T synonymous_variant 0.17
kasA 2519072 p.Ala320Thr missense_variant 0.16
kasA 2519107 c.993T>C synonymous_variant 0.15
kasA 2519108 p.Asp332Gln missense_variant 0.15
kasA 2519116 c.1002C>G synonymous_variant 0.15
kasA 2519137 c.1023T>G synonymous_variant 0.15
kasA 2519158 c.1044C>T synonymous_variant 0.14
kasA 2519167 c.1053T>G synonymous_variant 0.14
kasA 2519173 c.1059C>G synonymous_variant 0.15
ribD 2987614 c.776G>A splice_region_variant&stop_retained_variant 1.0
thyX 3067349 c.597G>C synonymous_variant 0.17
thyX 3067355 c.591A>C synonymous_variant 0.17
thyX 3067367 c.579G>C synonymous_variant 0.13
thyX 3067376 c.570G>A synonymous_variant 0.13
thyX 3067545 p.Glu134Ala missense_variant 0.15
thyX 3067549 p.Thr133Ala missense_variant 0.13
thyX 3067765 p.Leu61Ile missense_variant 0.13
thyX 3067781 c.165C>A synonymous_variant 0.13
thyX 3067802 c.144C>G synonymous_variant 0.14
thyX 3067850 c.96A>C synonymous_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448608 c.105G>A synonymous_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612665 p.Val151Ala missense_variant 1.0
rpoA 3877839 c.669G>C synonymous_variant 0.15
rpoA 3877848 c.660C>T synonymous_variant 0.14
clpC1 4038392 c.2313C>T synonymous_variant 0.13
clpC1 4038398 c.2307G>T synonymous_variant 0.15
clpC1 4038403 c.2302T>C synonymous_variant 0.15
clpC1 4038407 c.2298G>C synonymous_variant 0.19
clpC1 4038419 c.2286T>C synonymous_variant 0.21
clpC1 4038433 c.2272C>T synonymous_variant 0.19
clpC1 4038434 c.2271G>A synonymous_variant 0.19
clpC1 4038444 p.Ala754Lys missense_variant 0.16
clpC1 4038446 c.2259T>C synonymous_variant 0.16
clpC1 4038456 p.Val750Glu missense_variant 0.16
clpC1 4038460 p.Leu749Met missense_variant 0.16
clpC1 4038486 p.Gly740Asn missense_variant 0.14
clpC1 4038489 p.Ala739Gly missense_variant 0.14
clpC1 4038494 c.2211G>C synonymous_variant 0.14
clpC1 4038497 p.Ser736Gln missense_variant 0.13
clpC1 4038530 p.Glu725Asp missense_variant 0.17
clpC1 4038596 c.2109A>G synonymous_variant 0.21
clpC1 4038623 c.2082A>G synonymous_variant 0.18
clpC1 4038640 p.Asp689Asn missense_variant 0.21
clpC1 4038653 c.2052C>T synonymous_variant 0.19
clpC1 4038658 p.Lys683Gln missense_variant 0.17
clpC1 4038661 p.Ser682Thr missense_variant 0.17
clpC1 4038662 c.2043T>C synonymous_variant 0.17
clpC1 4038671 c.2034T>C synonymous_variant 0.19
clpC1 4038683 c.2022T>C synonymous_variant 0.15
clpC1 4038749 c.1956C>G synonymous_variant 0.15
clpC1 4038755 c.1950G>T synonymous_variant 0.17
clpC1 4038770 c.1935C>T synonymous_variant 0.18
clpC1 4038773 c.1932T>C synonymous_variant 0.19
clpC1 4038782 c.1923G>C synonymous_variant 0.17
clpC1 4038812 c.1893T>C synonymous_variant 0.17
clpC1 4038821 c.1884G>A synonymous_variant 0.21
clpC1 4038845 c.1860G>C synonymous_variant 0.26
clpC1 4038860 c.1845G>C synonymous_variant 0.33
clpC1 4038878 c.1827A>G synonymous_variant 0.33
clpC1 4038908 c.1797C>G synonymous_variant 0.29
clpC1 4038914 c.1791G>C synonymous_variant 0.29
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.29
clpC1 4038953 c.1752A>G synonymous_variant 0.23
clpC1 4038956 c.1749T>C synonymous_variant 0.23
clpC1 4038965 c.1740T>C synonymous_variant 0.22
clpC1 4038971 c.1734T>C synonymous_variant 0.19
clpC1 4038974 c.1731T>C synonymous_variant 0.23
clpC1 4038989 c.1716T>C synonymous_variant 0.24
clpC1 4038997 c.1708T>C synonymous_variant 0.22
clpC1 4039004 c.1701C>G synonymous_variant 0.21
clpC1 4039022 c.1683A>G synonymous_variant 0.18
clpC1 4039064 c.1641C>T synonymous_variant 0.21
clpC1 4039229 c.1476C>G synonymous_variant 0.13
clpC1 4039274 c.1431G>C synonymous_variant 0.15
clpC1 4039286 c.1419T>C synonymous_variant 0.14
clpC1 4039295 c.1410A>C synonymous_variant 0.18
clpC1 4039298 c.1407T>C synonymous_variant 0.18
clpC1 4039319 c.1386T>C synonymous_variant 0.15
clpC1 4039322 c.1383T>C synonymous_variant 0.14
clpC1 4039328 c.1377A>C synonymous_variant 0.14
clpC1 4039338 p.Thr456Gln missense_variant 0.13
clpC1 4039349 c.1356C>T synonymous_variant 0.14
clpC1 4039352 c.1353C>G synonymous_variant 0.13
clpC1 4039364 c.1341C>G synonymous_variant 0.15
clpC1 4039391 c.1314T>G synonymous_variant 0.2
clpC1 4039397 c.1308A>G synonymous_variant 0.18
clpC1 4039409 c.1296T>C synonymous_variant 0.18
clpC1 4039412 c.1293T>G synonymous_variant 0.13
clpC1 4039430 c.1275T>C synonymous_variant 0.14
clpC1 4039463 c.1242C>G synonymous_variant 0.15
clpC1 4039466 c.1239T>C synonymous_variant 0.18
clpC1 4039469 c.1236T>C synonymous_variant 0.2
clpC1 4039480 c.1225C>A synonymous_variant 0.24
clpC1 4039481 c.1224T>G synonymous_variant 0.27
clpC1 4039517 c.1188C>G synonymous_variant 0.24
clpC1 4039556 c.1149G>C synonymous_variant 0.19
clpC1 4039559 c.1146C>G synonymous_variant 0.19
clpC1 4039562 c.1143C>G synonymous_variant 0.2
clpC1 4039565 c.1140G>C synonymous_variant 0.2
clpC1 4039570 p.Met379Leu missense_variant 0.24
clpC1 4039576 p.Ala377Pro missense_variant 0.26
clpC1 4039577 c.1128T>C synonymous_variant 0.26
clpC1 4039589 c.1116G>C synonymous_variant 0.28
clpC1 4039610 c.1095G>C synonymous_variant 0.28
clpC1 4039616 c.1089G>C synonymous_variant 0.24
clpC1 4039622 c.1083C>T synonymous_variant 0.24
clpC1 4039625 c.1080G>A synonymous_variant 0.23
clpC1 4039661 c.1044T>G synonymous_variant 0.2
clpC1 4039664 c.1041G>C synonymous_variant 0.2
clpC1 4039694 c.1011G>C synonymous_variant 0.24
clpC1 4039724 c.981A>G synonymous_variant 0.19
clpC1 4039751 c.954A>G synonymous_variant 0.17
clpC1 4039760 c.945T>C synonymous_variant 0.14
clpC1 4039766 c.939T>C synonymous_variant 0.14
clpC1 4039769 c.936C>G synonymous_variant 0.14
clpC1 4039775 c.930G>C synonymous_variant 0.15
clpC1 4039778 c.927A>G synonymous_variant 0.15
clpC1 4039781 c.924G>C synonymous_variant 0.15
clpC1 4039790 c.915C>G synonymous_variant 0.22
clpC1 4039817 c.888A>C synonymous_variant 0.16
clpC1 4039820 c.885T>G synonymous_variant 0.16
clpC1 4039826 c.879C>G synonymous_variant 0.17
clpC1 4039831 c.874T>C synonymous_variant 0.18
clpC1 4039850 c.855T>C synonymous_variant 0.23
clpC1 4039865 c.840T>C synonymous_variant 0.2
clpC1 4039898 c.807C>G synonymous_variant 0.2
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.16
clpC1 4039931 c.774T>C synonymous_variant 0.15
clpC1 4039937 c.768G>C synonymous_variant 0.16
clpC1 4039946 c.759A>C synonymous_variant 0.18
clpC1 4039952 c.753T>C synonymous_variant 0.18
clpC1 4039979 c.726C>G synonymous_variant 0.2
clpC1 4039988 c.717C>G synonymous_variant 0.19
clpC1 4039991 c.714G>C synonymous_variant 0.17
clpC1 4040021 c.684A>C synonymous_variant 0.15
clpC1 4040024 c.681A>G synonymous_variant 0.15
clpC1 4040249 c.456A>G synonymous_variant 0.18
clpC1 4040267 c.438A>G synonymous_variant 0.25
clpC1 4040273 c.432T>C synonymous_variant 0.24
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.24
clpC1 4040279 c.426C>G synonymous_variant 0.24
clpC1 4040291 c.414G>C synonymous_variant 0.24
clpC1 4040318 c.387C>G synonymous_variant 0.26
clpC1 4040330 c.375C>G synonymous_variant 0.24
clpC1 4040342 c.363C>G synonymous_variant 0.22
clpC1 4040354 c.351A>G synonymous_variant 0.19
clpC1 4040363 c.342A>T synonymous_variant 0.18
clpC1 4040501 c.204C>T synonymous_variant 0.14
embC 4240699 c.837C>G synonymous_variant 0.15
embC 4241095 c.1233C>T synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4247512 c.999T>C synonymous_variant 0.15
embB 4247539 c.1026T>C synonymous_variant 0.16
embB 4247566 c.1053C>A synonymous_variant 0.15
embB 4247932 c.1419C>G synonymous_variant 0.14
whiB6 4338595 c.-75delG upstream_gene_variant 1.0