lineage | Count |
---|---|
81 | |
lineage4 | 27 |
lineage4.9 | 13 |
lineage4.2.1 | 2 |
lineage4.4.1.1 | 2 |
lineage4.1.2.1 | 11 |
lineage2.2.1 | 6 |
lineage4.1 | 1 |
La2 | 1 |
La1.8.1 | 2 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
lineage3.1.2 | 1 |
lineage2 | 1 |
lineage3 | 3 |
lineage4.5 | 2 |
lineage4.6.1.1 | 1 |
lineage4.1.1 | 2 |
lineage1.1.2 | 2 |
lineage4.3.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.8 | 2 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
La3 | 1 |
lineage3.1 | 1 |
lineage4.3.3 | 1 |
lineage4.9;La3 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3 | 1 |
lineage2.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage5.1.4 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 178 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045892 | Sensitive | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046802 | Other | lineage4 | None | ERR4831117 | HR-TB | None | ERR11067320 | Sensitive | lineage4.1.2.1 | None | SRR6785267 | Other | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR6789626 | Other | None | SRR7496509 | Other | None | SRR8217918 | HR-TB | None | ERR323043 | HR-TB | None | SRR7535086 | Other | None | ERR323039 | HR-TB | None | SRR7496517 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR323053 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3283024 | Other | None | ERR3283036 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR363479 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR363447 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR3797017 | Other | None | ERR363498 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR400326 | Sensitive | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400345 | Other | lineage4 | None | ERR4407463 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4553965 | MDR-TB | None | ERR4798431 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797313 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798504 | Other | lineage3 | None | ERR4811030 | Sensitive | None | ERR4800341 | Other | lineage3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR7910877 | MDR-TB | lineage4.1.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736848 | HR-TB | None | ERR736867 | HR-TB | None | ERR702404 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | SRR22249523 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | ERR9787139 | Other | lineage6.3.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | SRR1169306 | Other | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172234 | Other | None | SRR1172951 | Other | None | SRR1173400 | Other | None | SRR14801749 | Sensitive | None | SRR1174897 | HR-TB | None | SRR1184294 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR26159035 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675236 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675234 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3675311 | Other | None | ERR176740 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212033 | HR-TB | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4817037 | Other | lineage4.9 | None | SRR3675571 | HR-TB | None | SRR3675572 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR234659 | HR-TB | None | ERR4818615 | Other | None | SRR5007188 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341302 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | ERR2693257 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341470 | HR-TB | None | SRR5341333 | HR-TB | None | ERR2693231 | Other | None | ERR2693230 | Other | None |
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