TB-Profiler result

Run: ERR9786639
Summary

Run ID: ERR9786639

Sample name:

Date: 02-04-2023 12:36:53

Number of reads: 1623198

Percentage reads mapped: 88.62

Strain: lineage4.8

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.12
gyrA 7595 c.294C>G synonymous_variant 0.13
gyrA 7607 c.306C>G synonymous_variant 0.13
gyrA 7706 c.405C>G synonymous_variant 0.13
gyrA 7715 c.414G>C synonymous_variant 0.13
gyrA 7725 c.424C>T synonymous_variant 0.14
gyrA 7728 c.427A>C synonymous_variant 0.12
gyrA 7797 c.496_498delCTAinsTTG synonymous_variant 0.14
gyrA 7802 c.501C>G synonymous_variant 0.13
gyrA 7814 c.513C>G synonymous_variant 0.14
rpoB 761165 c.1359G>A synonymous_variant 0.13
rpoB 761168 c.1362C>G synonymous_variant 0.13
rpoB 761171 c.1365C>T synonymous_variant 0.14
rpoB 761195 c.1389G>C synonymous_variant 0.12
rpoB 761204 c.1398C>T synonymous_variant 0.13
rpoB 761207 c.1401C>T synonymous_variant 0.13
rpoB 761222 c.1416G>C synonymous_variant 0.13
rpoB 761510 c.1704T>C synonymous_variant 0.15
rpoB 761516 c.1710G>C synonymous_variant 0.16
rpoB 761537 c.1731C>G synonymous_variant 0.15
rpoB 762053 c.2247T>C synonymous_variant 0.13
rpoB 762062 c.2256T>C synonymous_variant 0.14
rpoB 762065 c.2259T>C synonymous_variant 0.14
rpoB 762083 c.2277T>C synonymous_variant 0.15
rpoB 762086 c.2280G>C synonymous_variant 0.15
rpoB 762101 c.2295C>G synonymous_variant 0.17
rpoB 762114 p.Ile770Val missense_variant 0.16
rpoB 762131 c.2325C>G synonymous_variant 0.17
rpoB 762134 c.2328C>T synonymous_variant 0.17
rpoB 762140 c.2334G>C synonymous_variant 0.17
rpoB 762143 c.2337T>C synonymous_variant 0.17
rpoB 762149 c.2343G>C synonymous_variant 0.17
rpoB 762158 c.2352G>C synonymous_variant 0.18
rpoB 762167 c.2361T>C synonymous_variant 0.19
rpoB 762176 c.2370T>C synonymous_variant 0.19
rpoB 762185 c.2379G>C synonymous_variant 0.17
rpoB 762212 c.2406G>C synonymous_variant 0.17
rpoB 762236 c.2430G>C synonymous_variant 0.13
rpoB 762257 c.2451C>G synonymous_variant 0.12
rpoB 762266 c.2460T>C synonymous_variant 0.13
rpoC 762857 c.-513C>G upstream_gene_variant 0.15
rpoC 762860 c.-510G>C upstream_gene_variant 0.15
rpoC 762917 c.-453C>G upstream_gene_variant 0.19
rpoC 762920 c.-450C>T upstream_gene_variant 0.19
rpoC 762926 c.-444C>G upstream_gene_variant 0.17
rpoC 762929 c.-441G>C upstream_gene_variant 0.19
rpoC 762995 c.-375G>T upstream_gene_variant 0.16
rpoC 763028 c.-342T>C upstream_gene_variant 0.18
rpoC 763031 c.-339T>G upstream_gene_variant 0.18
rpoC 763034 c.-336C>G upstream_gene_variant 0.16
rpoC 763040 c.-330C>G upstream_gene_variant 0.16
rpoC 763050 c.-320C>T upstream_gene_variant 0.15
rpoC 763053 c.-317T>C upstream_gene_variant 0.14
rpoC 763058 c.-312C>G upstream_gene_variant 0.14
rpoC 763076 c.-294C>G upstream_gene_variant 0.13
rpoC 764140 c.771C>T synonymous_variant 0.13
rpoC 764143 c.774G>C synonymous_variant 0.13
rpoC 766585 c.3216T>C synonymous_variant 0.15
rpoC 766607 p.Ile1080Leu missense_variant 0.17
rpoC 766610 p.Ser1081Pro missense_variant 0.14
rpoC 766618 c.3249G>T synonymous_variant 0.13
rpoC 766630 c.3261G>T synonymous_variant 0.13
rpoC 766690 c.3321G>C synonymous_variant 0.14
rpoC 766702 c.3333G>C synonymous_variant 0.15
rpoC 766708 c.3339A>G synonymous_variant 0.15
rpoC 766726 c.3357T>C synonymous_variant 0.15
rpoC 766738 c.3369G>T synonymous_variant 0.15
rpoC 766750 c.3381C>A synonymous_variant 0.14
rpoC 766765 c.3396A>C synonymous_variant 0.15
rpoC 766774 c.3405T>C synonymous_variant 0.16
rpoC 766775 p.Arg1136Asn missense_variant 0.16
rpoC 766787 p.Glu1140Gln missense_variant 0.15
rpoC 766798 c.3429C>G synonymous_variant 0.16
rpoC 766804 c.3435A>G synonymous_variant 0.17
rpoC 766978 c.3609C>A synonymous_variant 0.15
rpoC 766996 c.3627C>T synonymous_variant 0.19
rpoC 767002 c.3633G>C synonymous_variant 0.22
rpoC 767020 c.3651C>G synonymous_variant 0.2
rpoC 767023 c.3654C>T synonymous_variant 0.2
rpoC 767041 c.3672G>C synonymous_variant 0.23
rpoC 767044 c.3675G>C synonymous_variant 0.22
rpoC 767059 c.3690T>C synonymous_variant 0.2
rpoC 767098 c.3729T>C synonymous_variant 0.18
rpoC 767104 c.3735C>G synonymous_variant 0.18
rpoC 767105 p.Asn1246Gln missense_variant 0.19
rpoC 767110 c.3741T>C synonymous_variant 0.19
rpoC 767119 c.3750A>G synonymous_variant 0.18
rpoC 767152 c.3783T>C synonymous_variant 0.19
rpoC 767158 c.3789T>C synonymous_variant 0.18
rpoC 767167 c.3798C>G synonymous_variant 0.18
rpoC 767182 c.3813G>C synonymous_variant 0.15
rpoC 767197 c.3828G>A synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.14
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.15
rrs 1472292 n.447A>G non_coding_transcript_exon_variant 0.14
rrs 1472298 n.453G>C non_coding_transcript_exon_variant 0.13
rrs 1472311 n.466C>T non_coding_transcript_exon_variant 0.13
rrs 1472314 n.469A>G non_coding_transcript_exon_variant 0.13
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.13
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.13
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.13
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.15
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.15
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.16
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.15
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.18
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.16
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.17
rrs 1472683 n.838_839insTA non_coding_transcript_exon_variant 0.24
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.17
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.17
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.16
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.16
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.16
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.17
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.21
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.22
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.21
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.21
rrs 1473111 n.1266A>T non_coding_transcript_exon_variant 0.22
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.25
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.2
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.22
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.17
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.14
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.17
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.15
rrl 1473935 n.278C>T non_coding_transcript_exon_variant 0.13
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.13
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.13
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.13
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.13
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474026 n.369C>T non_coding_transcript_exon_variant 0.16
rrl 1474083 n.426C>T non_coding_transcript_exon_variant 0.21
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 0.19
rrl 1474094 n.437C>T non_coding_transcript_exon_variant 0.17
rrl 1474100 n.443C>T non_coding_transcript_exon_variant 0.13
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.13
rrl 1474110 n.453A>T non_coding_transcript_exon_variant 0.12
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.17
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.16
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.15
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.17
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.14
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.14
rrl 1474452 n.795C>G non_coding_transcript_exon_variant 0.15
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.24
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.33
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.32
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.32
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.32
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.34
rrl 1474708 n.1052dupG non_coding_transcript_exon_variant 0.34
rrl 1474711 n.1054_1055insA non_coding_transcript_exon_variant 0.34
rrl 1474715 n.1061delA non_coding_transcript_exon_variant 0.35
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.33
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.35
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.26
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.2
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.17
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.17
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.21
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.24
rrl 1475062 n.1405A>G non_coding_transcript_exon_variant 0.24
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.12
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.31
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.24
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.22
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.22
rrl 1475221 n.1564C>T non_coding_transcript_exon_variant 0.16
rrl 1475240 n.1583C>G non_coding_transcript_exon_variant 0.15
rrl 1475241 n.1584C>G non_coding_transcript_exon_variant 0.13
rrl 1475242 n.1585G>T non_coding_transcript_exon_variant 0.13
rrl 1475244 n.1587A>G non_coding_transcript_exon_variant 0.13
rrl 1475252 n.1595C>A non_coding_transcript_exon_variant 0.13
rrl 1475268 n.1611T>A non_coding_transcript_exon_variant 0.13
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.15
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.15
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.15
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.12
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.14
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.12
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.15
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.14
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.18
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.16
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.16
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.16
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.17
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.19
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.22
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.25
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.27
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.27
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.27
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.27
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.27
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.28
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.27
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.27
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.29
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.27
rrl 1476108 n.2451T>G non_coding_transcript_exon_variant 0.28
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.28
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.27
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.25
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.21
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.21
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.22
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.21
rrl 1476246 n.2589G>A non_coding_transcript_exon_variant 0.21
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.19
rrl 1476256 n.2599A>C non_coding_transcript_exon_variant 0.16
rrl 1476262 n.2605G>A non_coding_transcript_exon_variant 0.17
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.15
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.22
inhA 1674399 c.198A>G synonymous_variant 0.15
inhA 1674416 p.Ala72Gly missense_variant 0.19
inhA 1674418 c.217_219delAGCinsTCG synonymous_variant 0.2
inhA 1674428 p.Gly76Glu missense_variant 0.2
inhA 1674435 c.234G>C synonymous_variant 0.21
inhA 1674443 p.Ala81Val missense_variant 0.21
inhA 1674450 c.249G>C synonymous_variant 0.2
inhA 1674452 p.Ala84Glu missense_variant 0.2
inhA 1674471 c.270G>C synonymous_variant 0.2
inhA 1674480 c.279T>C synonymous_variant 0.18
inhA 1674483 c.282G>C synonymous_variant 0.18
inhA 1674486 c.285T>C synonymous_variant 0.18
inhA 1674489 c.288G>C synonymous_variant 0.18
inhA 1674531 c.330C>T synonymous_variant 0.16
inhA 1674534 c.333G>C synonymous_variant 0.16
inhA 1674542 p.Ala114Glu missense_variant 0.16
inhA 1674656 p.Ser152Thr missense_variant 0.14
inhA 1674690 c.489C>G synonymous_variant 0.17
inhA 1674699 c.498C>T synonymous_variant 0.18
inhA 1674702 c.501G>C synonymous_variant 0.17
inhA 1674703 c.502T>C synonymous_variant 0.17
inhA 1674714 c.513C>G synonymous_variant 0.18
inhA 1674718 c.517A>C synonymous_variant 0.16
inhA 1674745 p.Tyr182Val missense_variant 0.17
inhA 1674750 c.549T>C synonymous_variant 0.17
inhA 1674756 c.555T>G synonymous_variant 0.19
inhA 1674765 c.564C>G synonymous_variant 0.19
inhA 1674771 c.570C>G synonymous_variant 0.19
inhA 1674774 c.573A>C synonymous_variant 0.2
inhA 1674777 c.576C>G synonymous_variant 0.2
inhA 1674780 c.579T>G synonymous_variant 0.19
inhA 1674801 c.600T>C synonymous_variant 0.19
inhA 1674804 c.603G>C synonymous_variant 0.19
inhA 1674810 c.609C>G synonymous_variant 0.17
inhA 1674819 c.618G>C synonymous_variant 0.18
inhA 1674825 c.624C>T synonymous_variant 0.17
inhA 1674828 c.627G>A synonymous_variant 0.16
inhA 1674830 p.Glu210Gly missense_variant 0.16
inhA 1674839 p.Ala213Glu missense_variant 0.15
inhA 1674848 p.Gln216Arg missense_variant 0.15
inhA 1674858 c.657G>A synonymous_variant 0.14
inhA 1674870 c.669T>C synonymous_variant 0.13
inhA 1674876 c.675C>G synonymous_variant 0.14
inhA 1674879 c.678T>C synonymous_variant 0.14
rpsA 1833874 c.333T>C synonymous_variant 0.13
rpsA 1833886 c.345C>G synonymous_variant 0.14
rpsA 1833892 c.351G>A synonymous_variant 0.13
rpsA 1833894 p.Ala118Glu missense_variant 0.13
rpsA 1834051 c.510G>A synonymous_variant 0.13
rpsA 1834105 c.564C>T synonymous_variant 0.14
rpsA 1834150 c.609G>C synonymous_variant 0.14
rpsA 1834153 c.612T>C synonymous_variant 0.14
rpsA 1834154 p.Asn205Gln missense_variant 0.14
rpsA 1834157 c.616T>C synonymous_variant 0.14
rpsA 1834162 c.621A>G synonymous_variant 0.13
rpsA 1834165 c.624A>G synonymous_variant 0.14
rpsA 1834169 p.Thr210Ala missense_variant 0.14
rpsA 1834172 p.Ile211Val missense_variant 0.13
rpsA 1834177 c.636A>C synonymous_variant 0.13
rpsA 1834189 c.648G>C synonymous_variant 0.14
rpsA 1834222 c.681T>C synonymous_variant 0.17
rpsA 1834225 c.684C>G synonymous_variant 0.17
rpsA 1834231 c.690T>C synonymous_variant 0.16
rpsA 1834240 c.699T>C synonymous_variant 0.17
rpsA 1834249 c.708T>C synonymous_variant 0.17
rpsA 1834261 c.720A>G synonymous_variant 0.15
rpsA 1834264 c.723G>C synonymous_variant 0.15
rpsA 1834294 c.753G>C synonymous_variant 0.14
rpsA 1834297 c.756C>T synonymous_variant 0.14
rpsA 1834303 c.762T>G synonymous_variant 0.13
rpsA 1834306 c.765T>C synonymous_variant 0.13
rpsA 1834366 c.825A>G synonymous_variant 0.13
rpsA 1834396 c.855G>C synonymous_variant 0.14
rpsA 1834411 c.870T>C synonymous_variant 0.15
rpsA 1834423 c.882G>T synonymous_variant 0.13
rpsA 1834432 c.891G>C synonymous_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv3083 3448497 c.-7T>A upstream_gene_variant 1.0
alr 3840764 c.657G>C synonymous_variant 1.0
rpoA 3877737 c.771G>C synonymous_variant 0.13
rpoA 3877743 c.765T>C synonymous_variant 0.12
rpoA 3877764 c.744C>G synonymous_variant 0.13
rpoA 3877770 c.738A>G synonymous_variant 0.14
rpoA 3877785 c.723C>A synonymous_variant 0.13
rpoA 3877803 c.705G>C synonymous_variant 0.16
rpoA 3877818 c.690A>G synonymous_variant 0.16
rpoA 3877848 c.660C>T synonymous_variant 0.14
rpoA 3877856 c.652T>C synonymous_variant 0.14
rpoA 3877860 c.648C>T synonymous_variant 0.14
rpoA 3877866 c.642G>C synonymous_variant 0.12
rpoA 3877872 c.636C>T synonymous_variant 0.12
rpoA 3877875 c.633T>C synonymous_variant 0.13
rpoA 3878247 c.261G>C synonymous_variant 0.13
rpoA 3878250 c.258C>G synonymous_variant 0.13
rpoA 3878264 p.Ser82Gly missense_variant 0.14
rpoA 3878271 c.237T>C synonymous_variant 0.16
rpoA 3878283 p.Glu75Asp missense_variant 0.14
rpoA 3878298 c.210A>G synonymous_variant 0.14
rpoA 3878304 c.204G>C synonymous_variant 0.14
rpoA 3878310 c.198G>C synonymous_variant 0.14
rpoA 3878394 c.114G>T synonymous_variant 0.13
rpoA 3878698 c.-191A>G upstream_gene_variant 0.13
rpoA 3878701 c.-194C>G upstream_gene_variant 0.13
clpC1 4038721 c.1984C>T synonymous_variant 0.13
clpC1 4038727 p.Thr660Ser missense_variant 0.13
clpC1 4040522 c.183T>C synonymous_variant 0.13
clpC1 4040531 c.174T>G synonymous_variant 0.13
clpC1 4040539 c.166C>T synonymous_variant 0.13
clpC1 4040540 c.165G>T synonymous_variant 0.13
clpC1 4040546 c.159G>C synonymous_variant 0.13
clpC1 4040552 c.153G>C synonymous_variant 0.13
clpC1 4040561 c.144A>G synonymous_variant 0.13
clpC1 4040573 c.132T>A synonymous_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4248645 p.Ala711Asp missense_variant 1.0
whiB6 4338427 p.Gly32Ala missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0