EBG00000313339 - n.426C>T
Drug resistance types
41 Sensitive
3 RR-TB
30 HR-TB
21 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
47 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 61 |
| La1.2;La1.8.1 | 1 |
| M.canetti;lineage1 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| lineage4.8 | 3 |
| La1;lineage4.1.2 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2.1 | 6 |
| lineage2.2 | 3 |
| lineage4.3.4.2 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.2 | 2 |
| lineage4.1.1 | 1 |
| La1;lineage4.9 | 3 |
| lineage1.1.2 | 2 |
| lineage2.2.1.2 | 2 |
| lineage2.2.1 | 12 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.3.4.1 | 2 |
| La1.6 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.2.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage3.1.3 | 1 |
| La1.2.BCG | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.5 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| 1 | |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 146 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR1213875 | Sensitive | lineage4.3.3 | de | ERR751326 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR5341467 | Other | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR1035317 | RR-TB | lineage4.3.4.2 | br | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4769427 | Other | La1.2 | None | ERR1035295 | MDR-TB | lineage4.1.2.1 | br | SRR6046492 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR1035293 | MDR-TB | lineage4.3.4.2 | br | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR1035316 | MDR-TB | lineage4.3.2 | br | ERR1035354 | MDR-TB | lineage4.1.1 | br | ERR926154 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR2660539 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR1035315 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR4797264 | Sensitive | lineage4.9 | None | ERR11268039 | Other | La1.6 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR3675502 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1023509 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR1915487 | Other | La1.2.BCG | None | SRR1180270 | Other | lineage2.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1035299 | MDR-TB | lineage4.1.2.1 | br | SRR5341387 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR1035301 | MDR-TB | lineage4.3.2 | br | ERR1035300 | HR-TB | lineage4.1.2.1 | br | ERR9786639 | Sensitive | lineage4.8 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR752229 | Other | lineage4.5 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | SRR1175127 | Other | lineage2.2.1.2 | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR1213874 | MDR-TB | lineage2.2.1 | kr | ERR1063896 | Sensitive | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR6358979 | Other | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR1181251 | Other | lineage2.2.1 | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | ERR736856 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None |
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