Run ID: SRR7898221
Sample name:
Date: 15-08-2022 11:46:38
Number of reads: 4531910
Percentage reads mapped: 86.68
Strain: lineage1.1.2
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 0.99 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 | 0.97 |
lineage1.1.2 | Indo-Oceanic | EAI3;EAI5 | RD239 | 0.96 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.98 | rifampicin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
eis | 2715342 | c.-10G>A | upstream_gene_variant | 1.0 | kanamycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 0.98 |
gyrB | 6124 | c.885C>T | synonymous_variant | 0.97 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7841 | c.540C>G | synonymous_variant | 0.12 |
gyrA | 7847 | c.546G>T | synonymous_variant | 0.14 |
gyrA | 8283 | p.Ile328Leu | missense_variant | 0.13 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.13 |
gyrA | 8452 | p.Ala384Val | missense_variant | 0.95 |
gyrA | 8486 | c.1185T>C | synonymous_variant | 0.13 |
gyrA | 8489 | c.1188A>G | synonymous_variant | 0.14 |
gyrA | 8516 | c.1215T>C | synonymous_variant | 0.14 |
gyrA | 8537 | c.1236G>A | synonymous_variant | 0.14 |
gyrA | 8540 | c.1239C>G | synonymous_variant | 0.13 |
gyrA | 8546 | c.1245T>C | synonymous_variant | 0.15 |
gyrA | 8552 | c.1251C>A | synonymous_variant | 0.15 |
gyrA | 8555 | c.1254G>C | synonymous_variant | 0.14 |
gyrA | 8561 | c.1260A>C | synonymous_variant | 0.13 |
gyrA | 8603 | c.1302A>C | synonymous_variant | 0.15 |
gyrA | 8609 | c.1308G>C | synonymous_variant | 0.15 |
gyrA | 8619 | c.1318T>C | synonymous_variant | 0.15 |
gyrA | 8636 | c.1335A>C | synonymous_variant | 0.15 |
gyrA | 8642 | c.1341A>G | synonymous_variant | 0.14 |
gyrA | 8672 | c.1371A>G | synonymous_variant | 0.14 |
gyrA | 8678 | c.1377G>A | synonymous_variant | 0.16 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.14 |
gyrA | 8933 | c.1632G>A | synonymous_variant | 0.14 |
gyrA | 9047 | c.1746C>T | synonymous_variant | 0.95 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9443 | c.2142G>A | synonymous_variant | 1.0 |
fgd1 | 491583 | c.801G>A | synonymous_variant | 0.14 |
fgd1 | 491589 | c.807G>A | synonymous_variant | 0.16 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575935 | c.588G>A | synonymous_variant | 0.16 |
mshA | 575944 | c.597T>G | synonymous_variant | 0.15 |
mshA | 575953 | c.606G>C | synonymous_variant | 0.13 |
mshA | 576000 | p.Asp218Ala | missense_variant | 0.91 |
rpoB | 760106 | c.300G>T | synonymous_variant | 0.13 |
rpoB | 760118 | c.312T>C | synonymous_variant | 0.14 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.14 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.13 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.13 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.15 |
rpoB | 760434 | p.Val210Ile | missense_variant | 0.15 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.14 |
rpoB | 760490 | c.684C>T | synonymous_variant | 0.89 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.14 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.17 |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.14 |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.15 |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.14 |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.15 |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.16 |
rpoB | 760716 | c.910_912delCGCinsAGG | synonymous_variant | 0.19 |
rpoB | 760727 | c.921C>T | synonymous_variant | 0.18 |
rpoB | 760730 | c.924T>C | synonymous_variant | 0.16 |
rpoB | 760757 | c.951T>C | synonymous_variant | 0.13 |
rpoB | 760769 | c.963C>G | synonymous_variant | 0.13 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.16 |
rpoB | 760970 | c.1164G>C | synonymous_variant | 0.14 |
rpoB | 760971 | c.1165_1167delCGGinsAGA | synonymous_variant | 0.14 |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.17 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.17 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.18 |
rpoB | 761006 | c.1200C>T | synonymous_variant | 0.17 |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.15 |
rpoB | 761601 | p.Ala599Thr | missense_variant | 0.33 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.13 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.12 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.12 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.12 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.14 |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.12 |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.13 |
rpoC | 762410 | c.-960T>C | upstream_gene_variant | 0.14 |
rpoC | 762416 | c.-954A>G | upstream_gene_variant | 0.15 |
rpoC | 762425 | c.-945C>T | upstream_gene_variant | 0.15 |
rpoC | 762434 | c.-936T>C | upstream_gene_variant | 0.14 |
rpoC | 762470 | c.-900G>C | upstream_gene_variant | 0.17 |
rpoC | 762491 | c.-879T>C | upstream_gene_variant | 0.15 |
rpoB | 762510 | p.Ala902Pro | missense_variant | 0.18 |
rpoC | 762533 | c.-837T>C | upstream_gene_variant | 0.15 |
rpoC | 762536 | c.-834T>C | upstream_gene_variant | 0.15 |
rpoC | 762537 | c.-833T>C | upstream_gene_variant | 0.15 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.13 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.14 |
rpoC | 763630 | c.261G>T | synonymous_variant | 0.15 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.14 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.15 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.14 |
rpoC | 763884 | p.Ala172Val | missense_variant | 0.97 |
rpoC | 763886 | c.517C>A | synonymous_variant | 0.97 |
rpoC | 764218 | c.849C>T | synonymous_variant | 0.13 |
rpoC | 764236 | c.867G>A | synonymous_variant | 0.21 |
rpoC | 764248 | c.879C>G | synonymous_variant | 0.21 |
rpoC | 764260 | c.891G>A | synonymous_variant | 0.23 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.23 |
rpoC | 764272 | c.903G>T | synonymous_variant | 0.2 |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.16 |
rpoC | 764317 | c.948C>G | synonymous_variant | 0.19 |
rpoC | 764326 | c.957G>C | synonymous_variant | 0.17 |
rpoC | 764353 | c.984G>C | synonymous_variant | 0.16 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.2 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.13 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.14 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.13 |
rpoC | 764791 | c.1422C>A | synonymous_variant | 0.15 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.16 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.14 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.16 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.16 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.22 |
rpoC | 764932 | c.1563C>G | synonymous_variant | 0.19 |
rpoC | 764953 | c.1584G>C | synonymous_variant | 0.15 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.12 |
rpoC | 765171 | p.Pro601Leu | missense_variant | 1.0 |
rpoC | 765404 | c.2035C>T | synonymous_variant | 0.14 |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.13 |
rpoC | 765454 | c.2085C>G | synonymous_variant | 0.15 |
rpoC | 765688 | c.2319G>C | synonymous_variant | 0.17 |
rpoC | 765689 | c.2320C>T | synonymous_variant | 0.17 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.15 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.15 |
rpoC | 765742 | c.2373G>A | synonymous_variant | 0.14 |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.14 |
rpoC | 765877 | c.2508C>G | synonymous_variant | 0.16 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.15 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.15 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.15 |
rpoC | 766043 | p.Gln892Glu | missense_variant | 0.14 |
rpoC | 766054 | c.2685C>T | synonymous_variant | 0.13 |
rpoC | 766082 | p.Ala905Gln | missense_variant | 0.14 |
rpoC | 766312 | c.2943T>G | synonymous_variant | 0.12 |
rpoC | 766357 | c.2988C>T | synonymous_variant | 0.16 |
rpoC | 766366 | c.2997C>G | synonymous_variant | 0.15 |
rpoC | 766381 | c.3012C>T | synonymous_variant | 0.14 |
rpoC | 766384 | c.3015A>G | synonymous_variant | 0.13 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.13 |
rpoC | 766486 | c.3117A>C | synonymous_variant | 0.14 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.14 |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.14 |
rpoC | 766630 | c.3261G>C | synonymous_variant | 0.14 |
rpoC | 766666 | c.3297C>G | synonymous_variant | 0.17 |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.17 |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.2 |
rpoC | 766735 | c.3366G>T | synonymous_variant | 0.22 |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.18 |
rpoC | 766747 | c.3378C>G | synonymous_variant | 0.19 |
rpoC | 766750 | c.3381C>G | synonymous_variant | 0.19 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.16 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.15 |
rpoC | 766843 | c.3474T>C | synonymous_variant | 0.14 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.12 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.14 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776395 | p.Phe696Leu | missense_variant | 1.0 |
mmpS5 | 778740 | p.Val56Met | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.13 |
fbiC | 1304991 | c.2061G>C | synonymous_variant | 0.15 |
fbiC | 1304994 | c.2064A>G | synonymous_variant | 0.14 |
fbiC | 1304995 | p.Leu689Met | missense_variant | 0.14 |
fbiC | 1305006 | c.2076A>G | synonymous_variant | 0.15 |
fbiC | 1305021 | c.2091C>G | synonymous_variant | 0.13 |
fbiC | 1305195 | c.2265T>C | synonymous_variant | 0.16 |
fbiC | 1305201 | c.2271G>T | synonymous_variant | 0.16 |
fbiC | 1305210 | c.2280G>A | synonymous_variant | 0.14 |
fbiC | 1305215 | p.Ser762Thr | missense_variant | 0.13 |
fbiC | 1305219 | c.2289T>C | synonymous_variant | 0.13 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
atpE | 1460882 | c.-163T>C | upstream_gene_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471970 | n.125G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1471984 | n.139T>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474083 | n.426C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474093 | n.436G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475028 | n.1371G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475430 | n.1773T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475460 | n.1803A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475532 | n.1875A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475617 | n.1960C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475620 | n.1964delT | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475625 | n.1968G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476106 | n.2449A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476256 | n.2599A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476711 | n.3054G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476719 | n.3062C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476723 | n.3066T>A | non_coding_transcript_exon_variant | 0.14 |
rpsA | 1833541 | c.-1T>C | upstream_gene_variant | 0.13 |
rpsA | 1833554 | p.Thr5Ala | missense_variant | 0.14 |
rpsA | 1833557 | p.Val6Ile | missense_variant | 0.14 |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.13 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.16 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.16 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.13 |
rpsA | 1833793 | c.252C>T | synonymous_variant | 0.13 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.14 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.15 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.13 |
rpsA | 1834051 | c.510G>A | synonymous_variant | 0.15 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.14 |
rpsA | 1834102 | c.561T>G | synonymous_variant | 0.13 |
rpsA | 1834105 | c.564C>G | synonymous_variant | 0.13 |
rpsA | 1834336 | c.795C>G | synonymous_variant | 0.12 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.17 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.18 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.21 |
rpsA | 1834411 | c.870T>G | synonymous_variant | 0.23 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.25 |
rpsA | 1834450 | c.909G>A | synonymous_variant | 0.23 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.24 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.18 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.19 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.14 |
rpsA | 1834495 | c.954G>A | synonymous_variant | 0.16 |
rpsA | 1834522 | c.981C>T | synonymous_variant | 0.16 |
rpsA | 1834528 | c.987T>G | synonymous_variant | 0.15 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.15 |
rpsA | 1834555 | c.1014T>C | synonymous_variant | 0.14 |
rpsA | 1834556 | p.Ala339Thr | missense_variant | 0.15 |
rpsA | 1834598 | c.1057C>T | synonymous_variant | 0.17 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.2 |
rpsA | 1834624 | c.1083G>C | synonymous_variant | 0.22 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.21 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.17 |
rpsA | 1834660 | c.1119C>T | synonymous_variant | 0.18 |
rpsA | 1834669 | c.1128G>C | synonymous_variant | 0.21 |
rpsA | 1834687 | c.1146C>T | synonymous_variant | 0.18 |
rpsA | 1834720 | c.1179C>G | synonymous_variant | 0.18 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.14 |
rpsA | 1834733 | p.Ala398Pro | missense_variant | 0.13 |
rpsA | 1834753 | c.1212T>G | synonymous_variant | 0.14 |
rpsA | 1834774 | c.1233C>T | synonymous_variant | 0.18 |
rpsA | 1834780 | c.1239A>G | synonymous_variant | 0.16 |
rpsA | 1834786 | c.1245A>G | synonymous_variant | 0.13 |
rpsA | 1834789 | c.1248T>C | synonymous_variant | 0.14 |
rpsA | 1834792 | c.1251G>C | synonymous_variant | 0.13 |
rpsA | 1834798 | c.1257C>G | synonymous_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2167983 | p.Gly877Asp | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2518705 | c.591T>C | synonymous_variant | 0.13 |
kasA | 2518714 | c.600A>C | synonymous_variant | 0.13 |
kasA | 2518756 | c.642G>C | synonymous_variant | 0.14 |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.13 |
kasA | 2518789 | c.675G>T | synonymous_variant | 0.15 |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.18 |
kasA | 2518798 | c.684G>T | synonymous_variant | 0.17 |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.16 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
folC | 2746420 | c.1179A>G | synonymous_variant | 0.15 |
folC | 2746426 | c.1173G>C | synonymous_variant | 0.16 |
folC | 2746429 | c.1170C>A | synonymous_variant | 0.15 |
folC | 2746644 | p.Arg319Ser | missense_variant | 1.0 |
Rv2752c | 3064632 | c.1560C>T | synonymous_variant | 0.98 |
Rv2752c | 3065305 | p.Ala296Val | missense_variant | 0.98 |
Rv2752c | 3065901 | c.291A>G | synonymous_variant | 0.13 |
Rv2752c | 3065910 | c.282C>G | synonymous_variant | 0.17 |
Rv2752c | 3065916 | c.276T>C | synonymous_variant | 0.18 |
Rv2752c | 3065919 | c.273G>C | synonymous_variant | 0.19 |
Rv2752c | 3065947 | p.Gly82Ala | missense_variant | 0.13 |
Rv2752c | 3065949 | c.243C>T | synonymous_variant | 0.14 |
Rv2752c | 3065955 | c.235_237delTTGinsCTC | synonymous_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3877494 | p.Glu338Asp | missense_variant | 0.12 |
rpoA | 3877503 | c.1005G>C | synonymous_variant | 0.13 |
rpoA | 3877506 | c.1002C>T | synonymous_variant | 0.13 |
rpoA | 3877515 | c.993G>C | synonymous_variant | 0.13 |
rpoA | 3877557 | c.951C>G | synonymous_variant | 0.16 |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.16 |
rpoA | 3877593 | c.915C>T | synonymous_variant | 0.13 |
rpoA | 3877596 | c.912G>C | synonymous_variant | 0.13 |
rpoA | 3877650 | c.858C>T | synonymous_variant | 0.13 |
rpoA | 3877656 | c.852T>C | synonymous_variant | 0.16 |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.18 |
rpoA | 3877679 | p.Ala277Ser | missense_variant | 0.16 |
rpoA | 3877683 | c.825G>T | synonymous_variant | 0.16 |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.16 |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.18 |
rpoA | 3877704 | c.804G>C | synonymous_variant | 0.16 |
rpoA | 3878355 | c.153C>G | synonymous_variant | 0.12 |
rpoA | 3878364 | c.144A>C | synonymous_variant | 0.13 |
rpoA | 3878367 | c.141C>T | synonymous_variant | 0.14 |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.14 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.14 |
ddn | 3987057 | p.Arg72Trp | missense_variant | 0.97 |
clpC1 | 4038658 | p.Lys683Gln | missense_variant | 0.18 |
clpC1 | 4038661 | p.Ser682Thr | missense_variant | 0.16 |
clpC1 | 4038662 | c.2043T>C | synonymous_variant | 0.16 |
clpC1 | 4038671 | c.2034T>C | synonymous_variant | 0.17 |
clpC1 | 4038683 | c.2022T>G | synonymous_variant | 0.21 |
clpC1 | 4038695 | c.2010C>G | synonymous_variant | 0.21 |
clpC1 | 4038701 | c.2004G>T | synonymous_variant | 0.23 |
clpC1 | 4038704 | c.2001T>C | synonymous_variant | 0.22 |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.25 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.2 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.18 |
clpC1 | 4038917 | c.1788C>T | synonymous_variant | 0.19 |
clpC1 | 4038923 | c.1780_1782delCTAinsTTG | synonymous_variant | 0.21 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.14 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.15 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.19 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.15 |
clpC1 | 4039217 | c.1488G>A | synonymous_variant | 0.14 |
clpC1 | 4039243 | c.1462C>T | synonymous_variant | 0.15 |
clpC1 | 4039661 | c.1044T>G | synonymous_variant | 0.16 |
clpC1 | 4039664 | c.1041G>C | synonymous_variant | 0.16 |
clpC1 | 4040165 | c.540G>C | synonymous_variant | 0.13 |
clpC1 | 4040171 | c.534C>G | synonymous_variant | 0.14 |
clpC1 | 4040180 | c.525C>G | synonymous_variant | 0.15 |
clpC1 | 4040201 | c.504C>A | synonymous_variant | 0.15 |
clpC1 | 4040315 | c.390G>A | synonymous_variant | 0.16 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 0.89 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 0.91 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243848 | p.Val206Met | missense_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 0.98 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4247991 | p.Val493Ala | missense_variant | 0.98 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 0.96 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |
gid | 4408094 | p.Gly37Arg | missense_variant | 0.99 |