Rv3596c - c.390G>A
Drug resistance types
18 Sensitive
0 RR-TB
14 HR-TB
4 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
19 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.1.1 | 1 |
| lineage4.9 | 18 |
| lineage1.1.2 | 1 |
| La3;lineage4.9 | 9 |
| lineage1.1.3.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.1.2.1 | 1 |
| La1.7;lineage4.2 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9 | 4 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.2;La1.8.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.9;lineage7 | 1 |
| La3;lineage4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage3 | 1 |
| lineage1.1.3.3;lineage2.2.1;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 59 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR26399491 | Sensitive | lineage1.1.1.1 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR25827621 | MDR-TB | lineage1.1.3.3 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR369151 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR25827629 | Pre-XDR-TB | lineage1.1.3.3;lineage2.2.1;lineage3 | None | SRR1159378 | Other | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None |
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