Rv0006 - c.1215T>C


Drug resistance types
56 Sensitive 8 RR-TB 219 HR-TB 29 MDR-TB 8 Pre-XDR-TB 0 XDR-TB 161 Other
lineage Counts
lineage Count
222
lineage6.2.3 1
lineage4;lineage2.2 1
lineage4.9 44
lineage4.9;La3 1
lineage4.2;La1.7 1
lineage4.9;La1 1
La1.2 3
lineage6.3;lineage2.2.1 1
lineage4.1 2
lineage2.2.1 26
lineage2.1 4
lineage4.3.4.2.1 2
lineage3;lineage2.1 1
lineage4 66
lineage4.1.2.1 20
lineage4.3 1
lineage4.1.1.3 2
lineage2.2 7
lineage1.1.2 3
lineage3.1.3 1
La1.8.1 6
lineage4.1.1.2 1
lineage4.1.1 1
lineage3 7
lineage4.8 3
lineage4.9;lineage2.1 1
lineage2.2.1.1 4
lineage1.1 1
lineage5.2 2
lineage4.6.2.2 3
lineage3.1 3
lineage4.3.3 2
La2 1
lineage4.3.2.1 1
lineage4.7 1
lineage4.1.2 2
lineage4.4.2 1
La1 2
lineage6.1.1 2
lineage4.1.3 2
lineage4;lineage3.1 1
lineage4.9;La1.3 1
lineage2 2
lineage3.1.2 1
lineage4.6.1.1 1
lineage4.3.4 1
lineage4.3.2 2
lineage1.1.3.1 1
lineage4.8;lineage4.1 2
lineage6 1
lineage6.3.1 1
lineage6.1.3 1
La3 1
lineage4.4.1.1 2
lineage2.2.1.2 2
lineage1.2.1.2 1
lineage4.5 2
lineage4.3.4.1 1
La1.7.1 1
spoligotype Counts
spoligotype Count
None 481
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR8692905 HR-TB None
ERR551439 Sensitive lineage6.2.3 None
SRR8692863 Other lineage4;lineage2.2 None
SRR8692882 HR-TB lineage4.9 None
SRR26399973 Other lineage4.9;La3 None
SRR8692887 Other None
SRR23961559 Other lineage4.2;La1.7 None
SRR23961542 Other lineage4.9;La1 None
ERR4815604 HR-TB None
SRR23961549 Other La1.2 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
ERR176778 HR-TB None
SRR3675464 HR-TB lineage4.1 None
ERR1035239 HR-TB None
ERR176779 HR-TB None
SRR6325445 HR-TB None
SRR3675465 HR-TB None
SRR3675502 Other None
ERR158583 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
SRR3675482 HR-TB None
SRR3416776 Other lineage2.1 None
ERR161033 HR-TB None
SRR3675488 HR-TB None
ERR161034 Other lineage4.3.4.2.1 None
SRR3675486 HR-TB None
ERR4814536 MDR-TB lineage3;lineage2.1 None
ERR181744 HR-TB None
SRR3675221 HR-TB None
ERR4814639 HR-TB lineage4 None
SRR3675501 HR-TB None
ERR181824 HR-TB lineage4 None
SRR3675222 Other None
SRR3675236 HR-TB None
SRR3675234 Other None
ERR702405 Sensitive lineage2.1 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675246 Sensitive lineage4 None
ERR176568 Other lineage4.3 None
SRR3675311 Other None
SRR3675280 HR-TB lineage4.9 None
ERR181887 HR-TB None
SRR3675284 HR-TB lineage4.9 None
ERR176643 HR-TB None
SRR3675312 HR-TB lineage4 None
ERR176651 HR-TB None
ERR176751 HR-TB None
SRR3675383 HR-TB None
ERR176740 HR-TB None
SRR3675456 HR-TB None
ERR2027263 Other lineage4 None
SRR3675510 Other None
SRR3675545 HR-TB None
SRR3675550 Other None
ERR4817037 Other lineage4.9 None
ERR212001 HR-TB None
SRR3675574 HR-TB None
SRR5341422 HR-TB lineage2.1 None
SRR3675555 HR-TB None
SRR3675558 HR-TB None
ERR212125 HR-TB lineage4 None
ERR212033 HR-TB None
ERR212123 Other None
SRR3675572 Other None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR212138 HR-TB lineage4 None
ERR4816466 HR-TB None
ERR212121 HR-TB None
SRR3675571 HR-TB None
SRR5341384 Sensitive lineage4.9 None
ERR4816585 Other lineage2.2 None
SRR3742665 HR-TB None
ERR4817896 HR-TB lineage2.2.1 None
ERR4816656 HR-TB None
SRR7898221 MDR-TB lineage1.1.2 None
ERR2513121 Sensitive lineage3.1.3 None
SRR7496472 Other None
ERR4818021 Other La1.8.1 None
ERR234659 HR-TB None
ERR1035162 Other None
ERR4818110 Sensitive lineage4.9 None
ERR3275196 Other lineage2.2.1 nl
ERR4818252 Other lineage4.1.1.2 None
ERR2229143 Other lineage4.1.1 None
ERR4818929 HR-TB None
ERR4819051 Other lineage4 None
ERR4818393 RR-TB lineage3 None
SRR5341387 Other lineage4 None
ERR4818607 Sensitive lineage4.9 None
SRR5341453 Sensitive None
SRR5007188 Other lineage4 None
SRR5341373 HR-TB lineage4 None
ERR1035138 MDR-TB None
SRR5341400 HR-TB lineage4 None
SRR5341456 Other None
SRR5341425 Other lineage4 None
ERR2514327 HR-TB lineage4.8 None
SRR5341418 Other None
SRR5341432 HR-TB lineage4 None
SAMN02414850 Other lineage4.1.2.1 None
SRR5341455 Sensitive lineage4 None
SRR5341298 Sensitive lineage4 None
ERR4819781 Other lineage2.2.1 None
SRR5341293 HR-TB lineage4 None
SRR5341300 Other lineage4 None
ERR2514692 Other None
SRR5341302 HR-TB None
SRR5341299 Sensitive lineage4 None
SRR5341308 Sensitive lineage4 None
ERR2514821 Other lineage2.2.1 None
SRR5341313 HR-TB None
SRR5341461 Sensitive lineage4 None
SRR5341315 Sensitive None
SRR5341333 HR-TB None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341330 HR-TB None
ERR4820854 Other lineage4.1.2.1 None
SRR5341366 Sensitive lineage4 None
ERR2693231 Other None
ERR2446563 Other lineage2.2.1 nl
ERR2693239 HR-TB None
ERR4821053 Other lineage3 None
SRR5341469 Other lineage4 None
SRR5341470 HR-TB None
ERR502511 Sensitive lineage4.9;lineage2.1 None
ERR2693254 Other None
ERR2693230 Other None
SRR6045555 HR-TB None
SRR6045526 HR-TB None
ERR278594 HR-TB None
ERR2693257 Other None
SRR5535933 HR-TB None
SRR6045519 HR-TB None
SRR6044780 Other lineage4.9 None
ERR2693232 Other lineage4.9 None
SRR6045892 Sensitive None
SRR6046141 Other lineage4.9 None
SRR6046133 HR-TB None
SRR6044790 HR-TB None
SRR6044855 Other lineage4.9 None
SRR6044835 Sensitive lineage4 None
SRR6044876 Sensitive lineage4 None
SRR6044918 Sensitive lineage4.9 None
SRR6044890 Other lineage4.9 None
SRR6045233 HR-TB None
SRR6046015 Other lineage4.9 None
SRR6045952 HR-TB None
SRR6045010 Other lineage4 None
SRR6045053 Other None
SRR6045217 Other lineage4 None
SRR6046046 Other None
SRR6046305 Other lineage4.9 None
SRR6046210 Other lineage4 None
SRR6045327 HR-TB None
SRR6046225 HR-TB None
SRR6046253 HR-TB lineage4.9 None
SRR6046066 HR-TB None
SRR6045399 Other None
SRR6046299 HR-TB None
SRR6325444 HR-TB None
SRR6046460 HR-TB None
SRR6046362 HR-TB None
SRR6046382 HR-TB lineage2.2.1 None
SRR6046397 Other None
SRR6046482 HR-TB None
SRR6325448 HR-TB None
SRR6046824 HR-TB None
SRR6046514 HR-TB None
SRR6046540 HR-TB None
SRR6046594 HR-TB lineage4 None
SRR6046644 HR-TB None
SRR6325447 HR-TB None
SRR6458423 HR-TB lineage2.2.1 None
SRR6046878 HR-TB lineage4 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6079962 HR-TB lineage2.2.1.1 None
SRR6397654 HR-TB lineage4.1.2.1 None
ERR3077978 Other lineage1.1 None
SRR6511621 HR-TB None
SRR6325442 HR-TB None
ERR323037 HR-TB lineage4 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR485006 HR-TB lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4831545 Pre-XDR-TB lineage2.2 None
ERR323034 HR-TB lineage3.1 None
ERR4831620 MDR-TB lineage2.2.1 None
SRR6832787 RR-TB lineage2.2.1 None
ERR294248 HR-TB None
SRR6831950 Other lineage4.3.3 None
SRR6789624 MDR-TB lineage4.1 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831657 MDR-TB lineage2.2.1 None
SRR6789626 Other None
ERR294266 HR-TB None
ERR502524 HR-TB La2 None
ERR323036 HR-TB None
ERR502510 Sensitive lineage4 None
ERR502889 Other None
ERR502532 HR-TB None
ERR5311099 HR-TB None
ERR323038 HR-TB None
SRR7131023 Other lineage4.1.2.1 None
ERR5311090 HR-TB None
ERR5311081 HR-TB None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR8217918 HR-TB None
SRR7496509 Other None
SRR7535082 Sensitive lineage4 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7496517 Other None
SRR7496523 Other lineage4.7 None
SRR9970980 Other lineage4.1.2 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9970979 Sensitive lineage4.8 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR323041 HR-TB None
ERR323039 HR-TB None
ERR323045 HR-TB None
ERR323043 HR-TB None
ERR323055 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323053 HR-TB None
ERR067712 HR-TB lineage4 None
ERR323063 HR-TB None
ERR323108 HR-TB lineage4 None
ERR067681 HR-TB None
ERR323066 Sensitive lineage4 None
ERR323085 Sensitive lineage4 None
DRR188519 Other lineage4.4.2 None
ERR323107 Other lineage4 None
ERR1063857 HR-TB None
ERR1034634 HR-TB None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1034652 Other None
ERR1035122 Sensitive None
ERR1035157 Other lineage4.9 None
ERR1063839 HR-TB lineage2.2 None
ERR1063862 HR-TB None
ERR1063859 HR-TB None
ERR1063858 HR-TB None
ERR3273109 MDR-TB lineage4 None
ERR1063896 Sensitive None
ERR1063883 Sensitive lineage4 None
ERR133986 HR-TB None
ERR137286 Sensitive lineage4 None
ERR3283021 HR-TB None
ERR3283010 Other La1 None
ERR3283013 MDR-TB lineage4 None
ERR3283017 HR-TB None
ERR3283025 HR-TB None
ERR3283030 HR-TB lineage4.9 None
ERR3283024 Other None
ERR3283028 Other None
ERR3283027 HR-TB None
ERR3283032 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR5336148 Other None
ERR3283040 HR-TB None
ERR3283036 HR-TB None
ERR3445502 HR-TB lineage4 None
ERR3283058 Other lineage4.9 None
ERR3439432 Other None
ERR3283055 HR-TB None
ERR3445501 HR-TB None
ERR3797023 HR-TB La1.8.1 None
ERR3797014 Other None
ERR3445503 HR-TB None
ERR3468544 HR-TB None
ERR3797016 HR-TB None
ERR3797015 HR-TB None
ERR3797017 Other None
ERR3797036 HR-TB None
ERR3797046 HR-TB None
ERR3797043 HR-TB None
ERR3797073 HR-TB La1.8.1 None
ERR3797044 Other None
ERR3797061 Other None
ERR3797069 Other None
ERR3797063 HR-TB None
ERR3797047 HR-TB lineage4 None
ERR3797060 Other La1.8.1 None
ERR3797083 HR-TB None
ERR3797081 Sensitive lineage4 None
ERR3797080 HR-TB lineage4.9 None
ERR3797086 Other lineage4.9 None
ERR403298 HR-TB lineage4 None
ERR387051 HR-TB None
ERR3799304 Other lineage6.1.1 None
ERR3804155 Other lineage4.1.2.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4024991 Other None
ERR405209 Sensitive lineage4 None
ERR4188247 HR-TB None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR4407452 Sensitive lineage3 None
ERR4188350 HR-TB None
ERR4769474 HR-TB lineage4 None
ERR473332 Other lineage4 None
ERR4407463 HR-TB None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR4769521 HR-TB None
ERR4769493 Pre-XDR-TB lineage4.9;La1.3 None
ERR4769497 HR-TB La1.2 None
ERR4796254 Sensitive lineage4 None
ERR4796929 Sensitive lineage4 None
ERR4797264 Sensitive None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797184 Sensitive lineage4 None
ERR4797588 MDR-TB lineage3 None
ERR4797474 Other None
ERR4798406 HR-TB None
ERR4798099 Other None
ERR4798262 HR-TB La1 None
ERR4798504 Other lineage3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4799378 Sensitive lineage4 None
ERR4798648 HR-TB lineage3.1.2 None
ERR4799025 Pre-XDR-TB None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4800341 Other lineage3 None
ERR4799513 HR-TB lineage2.2 None
ERR4810741 HR-TB None
ERR4811022 HR-TB None
ERR4811105 HR-TB None
ERR6198317 Other La1.2 None
ERR4811493 HR-TB None
ERR4811142 MDR-TB None
ERR6358755 Other lineage4.6.1.1 None
ERR6358991 HR-TB None
ERR6358837 HR-TB None
ERR6358979 Other None
ERR736865 HR-TB None
ERR6359045 HR-TB None
ERR6866022 Other None
ERR6866547 Sensitive lineage4 None
ERR6866807 HR-TB lineage4 None
ERR702406 HR-TB None
ERR736817 HR-TB lineage4.3.4 None
ERR6866410 Sensitive None
ERR6866639 Other None
ERR702404 HR-TB None
ERR736831 HR-TB lineage4.9 None
ERR736834 Sensitive lineage4 None
ERR736835 HR-TB None
ERR736839 Other None
ERR736848 HR-TB None
ERR736856 HR-TB lineage4 None
ERR736872 Sensitive lineage4 None
ERR736867 HR-TB None
ERR736875 HR-TB lineage4 None
ERR9119500 MDR-TB lineage5.2 None
ERR751326 Sensitive lineage4 None
ERR772255 MDR-TB lineage4.3.2 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR21733183 RR-TB lineage1.1.2 None
ERR736874 HR-TB None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR8976043 HR-TB None
ERR9117709 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9117805 Other lineage4.3.2 None
ERR9786421 Other lineage4.1.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9119669 HR-TB None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR9786444 Sensitive lineage4.8 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786604 Other None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786671 Other None
ERR9786601 Other lineage4.1.2.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9787165 Other lineage6 None
ERR9786843 Other None
ERR9787014 Other lineage6.1.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9787197 Other None
ERR9787139 Other lineage6.3.1 None
SRR10809074 Sensitive lineage4 None
ERR987722 HR-TB None
SRR10808805 Sensitive None
ERR9787256 Other lineage6.1.3 None
SRR10808399 Sensitive lineage4 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR1158918 Sensitive lineage4 None
SRR1162740 Other lineage4.1.2.1 None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1165584 Other lineage4.1.2.1 None
SRR1165506 Other lineage4.1.2.1 None
SRR1167055 Other lineage4.1.2.1 None
SRR1169249 Other La3 None
SRR1169194 Other None
SRR1167384 Other lineage4 None
SRR1172234 Other None
SRR1169306 Other None
SRR1172214 HR-TB lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
SRR1172728 MDR-TB None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172817 HR-TB None
SRR1172857 MDR-TB None
SRR1173153 HR-TB None
SRR1173400 Other None
SRR1172310 HR-TB None
SRR1172951 Other None
SRR1173118 Other None
SRR1173384 Other lineage4 None
SRR1173568 Other lineage4.9 None
SRR1173633 HR-TB lineage4.9 None
SRR1173788 Other None
SRR1173706 Other lineage4.9 None
SRR1173767 HR-TB lineage4.4.1.1 None
SRR1173629 Other None
SRR1173778 Other None
SRR1175049 RR-TB None
SRR1174897 HR-TB None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1175074 MDR-TB None
SRR1180147 Other lineage2.2.1.1 None
SRR1175506 Sensitive lineage4.9 None
SRR1180137 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR1180172 Other lineage2.2.1 None
SRR1180270 Other lineage2.2.1 None
SRR1181020 Other lineage2.2.1 None
SRR1181289 Other lineage2.2.1 None
SRR1180996 HR-TB lineage4 None
SRR1183106 Other lineage2.2.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR1184312 HR-TB lineage2.2.1 None
SRR1183145 Other lineage2.2.1 None
SRR1184024 Other lineage2.2.1.1 None
SRR1184294 HR-TB None
SRR1183965 Sensitive lineage4.9 None
SRR1184380 HR-TB None
SRR1184346 HR-TB lineage3.1 None
SRR1184372 MDR-TB None
SRR1196546 HR-TB None
SRR1184388 Other None
SRR1196494 MDR-TB None
SRR12416824 HR-TB None
SRR1196768 MDR-TB None
SRR12142341 HR-TB None
SRR12416840 MDR-TB lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
SRR13423544 Other lineage4.5 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR13861396 HR-TB lineage4.9 None
SRR13861322 Other lineage4.9 None
SRR13861329 Other lineage4.9 None
SRR13861397 HR-TB lineage4.9 None
SRR13861381 MDR-TB lineage4.9 None
SRR13861434 RR-TB lineage4.9 None
SRR13861571 RR-TB lineage4.9 None
SRR13861534 Other lineage4.9 None
SRR13861500 RR-TB lineage4.9 None
SRR13861611 Sensitive lineage4.9 None
SRR1710057 Other lineage2.1 None
SRR13861663 Sensitive lineage4.9 None
SRR15368973 Other None
SRR13861646 Other lineage4.9 None
SRR14782405 HR-TB None
SRR14801749 Sensitive None
SRR1640750 HR-TB None
SRR1791747 Other La1.8.1 None
SRR1791696 Other La1.8.1 None
SRR17658565 Other lineage3 None
SRR1792478 HR-TB La1.7.1 None
SRR18213713 HR-TB lineage4.5 None
SRR18910194 HR-TB lineage2.2 None
SRR19303884 HR-TB None
SRR19304036 HR-TB None
SRR20969677 HR-TB lineage2 None