TB-Profiler result

Run: SRR8692863
Summary

Run ID: SRR8692863

Sample name:

Date: 13-08-2023 21:25:30

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4;lineage2.2

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.05
lineage4 Euro-American LAM;T;S;X;H None 0.89
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.11
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 0.42 linezolid
embB 4247431 p.Met306Ile missense_variant 0.23 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6083 p.Gly282Cys missense_variant 0.18
gyrB 6223 c.984G>C synonymous_variant 0.15
gyrB 6242 p.Arg335Lys missense_variant 0.18
gyrB 6250 c.1011A>G synonymous_variant 0.2
gyrB 6253 c.1014G>C synonymous_variant 0.2
gyrB 6265 c.1026C>T synonymous_variant 0.2
gyrB 6268 c.1029C>G synonymous_variant 0.22
gyrB 6280 c.1041T>C synonymous_variant 0.22
gyrB 6286 c.1047T>C synonymous_variant 0.18
gyrB 6295 c.1056A>G synonymous_variant 0.2
gyrB 6298 c.1059C>T synonymous_variant 0.18
gyrB 6301 c.1062G>T synonymous_variant 0.17
gyrA 6307 c.-995T>G upstream_gene_variant 0.17
gyrA 6310 c.-992G>C upstream_gene_variant 0.17
gyrB 6322 p.Lys361Asn missense_variant 0.17
gyrB 6324 c.1086dupC frameshift_variant 0.17
gyrB 6328 c.1090delG frameshift_variant 0.17
gyrA 6331 c.-971A>G upstream_gene_variant 0.17
gyrB 6343 p.Glu368Asp missense_variant 0.17
gyrA 6361 c.-941G>A upstream_gene_variant 0.25
gyrA 6832 c.-470C>A upstream_gene_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 0.43
gyrA 7433 c.132G>C synonymous_variant 0.12
gyrA 7451 c.150C>G synonymous_variant 0.15
gyrA 7457 c.156T>C synonymous_variant 0.14
gyrA 7475 c.174A>C synonymous_variant 0.14
gyrA 7484 c.183T>C synonymous_variant 0.14
gyrA 7487 c.186C>G synonymous_variant 0.15
gyrA 7585 p.Ser95Thr missense_variant 0.2
gyrA 7589 c.288G>C synonymous_variant 0.18
gyrA 7607 c.306C>G synonymous_variant 0.18
gyrA 7631 c.330G>C synonymous_variant 0.23
gyrA 7637 c.336C>T synonymous_variant 0.23
gyrA 7658 c.357A>G synonymous_variant 0.17
gyrA 7664 c.363T>C synonymous_variant 0.17
gyrA 7700 c.399G>T synonymous_variant 0.15
gyrA 7710 c.409T>C synonymous_variant 0.14
gyrA 7715 c.414G>C synonymous_variant 0.2
gyrA 7728 c.427_429delAGGinsCGT synonymous_variant 0.19
gyrA 7752 p.Asp151Asn missense_variant 0.2
gyrA 7763 c.462T>C synonymous_variant 0.21
gyrA 7769 c.468C>T synonymous_variant 0.21
gyrA 7775 c.474C>G synonymous_variant 0.21
gyrA 7778 c.477G>C synonymous_variant 0.2
gyrA 7784 c.483A>G synonymous_variant 0.2
gyrA 7796 c.495G>C synonymous_variant 0.21
gyrA 7799 c.498A>G synonymous_variant 0.2
gyrA 7802 c.501C>G synonymous_variant 0.2
gyrA 7814 c.513C>G synonymous_variant 0.21
gyrA 7832 c.531G>T synonymous_variant 0.23
gyrA 7835 c.534A>G synonymous_variant 0.25
gyrA 7841 c.540C>T synonymous_variant 0.23
gyrA 7853 c.552C>T synonymous_variant 0.18
gyrA 8069 c.768T>C synonymous_variant 0.12
gyrA 8078 c.777A>C synonymous_variant 0.12
gyrA 8090 c.789C>G synonymous_variant 0.19
gyrA 8096 c.795T>G synonymous_variant 0.19
gyrA 8099 c.798T>C synonymous_variant 0.19
gyrA 8106 p.Leu269Ile missense_variant 0.17
gyrA 8129 c.828T>C synonymous_variant 0.17
gyrA 8135 c.834C>G synonymous_variant 0.21
gyrA 8156 c.855T>C synonymous_variant 0.2
gyrA 8168 c.867A>G synonymous_variant 0.26
gyrA 8177 c.876A>C synonymous_variant 0.21
gyrA 8189 c.888G>C synonymous_variant 0.22
gyrA 8190 p.Ala297Thr missense_variant 0.18
gyrA 8198 c.897T>C synonymous_variant 0.2
gyrA 8207 c.906T>C synonymous_variant 0.21
gyrA 8210 c.909G>A synonymous_variant 0.21
gyrA 8219 c.918T>C synonymous_variant 0.17
gyrA 8283 p.Ile328Leu missense_variant 0.18
gyrA 8288 c.987T>C synonymous_variant 0.17
gyrA 8294 c.993T>C synonymous_variant 0.17
gyrA 8486 c.1185T>C synonymous_variant 0.13
gyrA 8489 c.1188A>G synonymous_variant 0.19
gyrA 8504 c.1203G>C synonymous_variant 0.33
gyrA 8516 c.1215T>C synonymous_variant 0.3
gyrA 8520 c.1219C>T synonymous_variant 0.3
gyrA 8531 c.1230G>C synonymous_variant 0.33
gyrA 8536 p.Glu412Ala missense_variant 0.33
gyrA 8539 p.Thr413Asn missense_variant 0.33
gyrA 8542 p.Val414Ala missense_variant 0.33
gyrA 8547 p.Ile416Val missense_variant 0.33
gyrA 8555 c.1254G>C synonymous_variant 0.33
gyrA 8556 p.Ala419Ser missense_variant 0.33
gyrA 8561 c.1260A>C synonymous_variant 0.37
gyrA 8567 p.Ile422Met missense_variant 0.37
gyrA 8580 p.Ile427Val missense_variant 0.35
gyrA 8603 c.1302A>C synonymous_variant 0.44
gyrA 8609 c.1308G>C synonymous_variant 0.44
gyrA 8619 c.1318T>C synonymous_variant 0.35
gyrA 8624 c.1323G>T synonymous_variant 0.38
gyrA 8627 c.1326C>A synonymous_variant 0.33
gyrA 8636 c.1335A>T synonymous_variant 0.25
gyrA 8645 c.1344C>T synonymous_variant 0.21
gyrA 8655 p.Ile452Val missense_variant 0.12
gyrA 8690 c.1389C>G synonymous_variant 0.14
gyrA 8693 c.1392T>C synonymous_variant 0.14
gyrA 8696 c.1395G>C synonymous_variant 0.14
gyrA 8699 c.1398A>G synonymous_variant 0.13
gyrA 9230 c.1929T>C synonymous_variant 0.12
gyrA 9304 p.Gly668Asp missense_variant 0.3
fgd1 491742 c.960T>C synonymous_variant 0.23
mshA 575626 c.279C>A synonymous_variant 0.17
mshA 575907 p.Ala187Val missense_variant 0.2
ccsA 619782 c.-109C>A upstream_gene_variant 0.17
rpoB 760091 c.285G>C synonymous_variant 0.14
rpoB 760106 c.300G>C synonymous_variant 0.19
rpoB 760112 c.306T>C synonymous_variant 0.19
rpoB 760118 c.312T>G synonymous_variant 0.2
rpoB 760121 c.315T>C synonymous_variant 0.2
rpoB 760130 p.Asp108Glu missense_variant 0.19
rpoB 760139 c.333A>G synonymous_variant 0.17
rpoB 760142 c.336C>G synonymous_variant 0.16
rpoB 760145 c.339C>G synonymous_variant 0.17
rpoB 760331 c.525G>T synonymous_variant 0.14
rpoB 760337 c.531C>G synonymous_variant 0.15
rpoB 760340 c.534G>C synonymous_variant 0.16
rpoB 760354 p.Glu183Ala missense_variant 0.14
rpoB 760361 c.555T>C synonymous_variant 0.16
rpoB 760368 p.Ser188Ala missense_variant 0.18
rpoB 760376 p.Asp190Glu missense_variant 0.2
rpoB 760380 p.Thr192Asp missense_variant 0.25
rpoB 760400 c.594G>C synonymous_variant 0.24
rpoB 760407 p.Ser201Gly missense_variant 0.24
rpoB 760415 c.609C>T synonymous_variant 0.24
rpoB 760424 c.618C>G synonymous_variant 0.17
rpoB 760430 c.624T>C synonymous_variant 0.18
rpoB 760484 c.678A>G synonymous_variant 0.12
rpoB 760502 c.696C>G synonymous_variant 0.2
rpoB 760508 c.702G>C synonymous_variant 0.21
rpoB 760511 c.705G>C synonymous_variant 0.21
rpoB 760522 p.Ser239Asn missense_variant 0.22
rpoB 760532 c.726T>C synonymous_variant 0.29
rpoB 760535 c.729C>G synonymous_variant 0.27
rpoB 760541 c.735G>C synonymous_variant 0.25
rpoB 760547 c.741G>C synonymous_variant 0.24
rpoB 760567 p.Ser254Trp missense_variant 0.13
rpoB 760591 p.Val262Ala missense_variant 0.15
rpoB 760625 c.819C>G synonymous_variant 0.13
rpoB 760796 c.990A>G synonymous_variant 0.17
rpoB 760805 c.999G>C synonymous_variant 0.18
rpoB 760808 c.1002C>G synonymous_variant 0.18
rpoB 760811 c.1005C>G synonymous_variant 0.18
rpoB 760817 c.1011A>G synonymous_variant 0.18
rpoB 760820 c.1014T>C synonymous_variant 0.18
rpoB 760826 c.1020C>G synonymous_variant 0.31
rpoB 760830 c.1024T>C synonymous_variant 0.23
rpoB 760841 c.1035T>C synonymous_variant 0.23
rpoB 760858 p.Val351Ala missense_variant 0.15
rpoB 760862 c.1056G>C synonymous_variant 0.18
rpoB 760919 c.1113C>T synonymous_variant 0.16
rpoB 760925 c.1119T>C synonymous_variant 0.16
rpoB 760928 c.1122G>C synonymous_variant 0.19
rpoB 760946 c.1140A>G synonymous_variant 0.15
rpoB 760965 p.Met387Leu missense_variant 0.16
rpoB 760970 c.1164G>C synonymous_variant 0.15
rpoB 761133 c.1327T>C synonymous_variant 0.13
rpoB 761165 c.1359G>C synonymous_variant 0.15
rpoB 761180 c.1374A>C synonymous_variant 0.17
rpoB 761189 c.1383T>C synonymous_variant 0.17
rpoB 761195 c.1389G>C synonymous_variant 0.17
rpoB 761198 c.1392G>T synonymous_variant 0.17
rpoB 761219 c.1413G>C synonymous_variant 0.15
rpoB 761221 p.Ser472Cys missense_variant 0.14
rpoB 761249 c.1443A>G synonymous_variant 0.18
rpoB 761261 c.1455G>C synonymous_variant 0.19
rpoB 761273 c.1467T>C synonymous_variant 0.14
rpoB 761282 c.1476C>T synonymous_variant 0.13
rpoB 761300 c.1494G>C synonymous_variant 0.15
rpoB 761579 c.1773G>C synonymous_variant 0.18
rpoB 761606 c.1800C>G synonymous_variant 0.15
rpoB 761615 c.1809A>C synonymous_variant 0.14
rpoB 761636 c.1830G>C synonymous_variant 0.15
rpoB 761648 c.1842T>C synonymous_variant 0.16
rpoB 761666 c.1860G>C synonymous_variant 0.16
rpoB 761669 c.1863C>T synonymous_variant 0.16
rpoB 761675 c.1869G>T synonymous_variant 0.15
rpoB 761687 c.1881C>T synonymous_variant 0.17
rpoB 761892 p.Ile696Leu missense_variant 0.14
rpoB 761903 c.2097T>C synonymous_variant 0.15
rpoB 761909 c.2103T>C synonymous_variant 0.14
rpoB 761912 c.2106T>C synonymous_variant 0.14
rpoB 761915 p.Asp703Glu missense_variant 0.14
rpoB 761930 c.2124G>C synonymous_variant 0.24
rpoB 761948 c.2142G>C synonymous_variant 0.32
rpoB 761954 c.2148C>G synonymous_variant 0.33
rpoB 761990 c.2184G>C synonymous_variant 0.44
rpoB 761999 c.2193G>C synonymous_variant 0.42
rpoB 762002 c.2196C>G synonymous_variant 0.4
rpoB 762047 c.2241G>A synonymous_variant 0.38
rpoB 762053 c.2247T>C synonymous_variant 0.36
rpoB 762065 c.2259T>C synonymous_variant 0.38
rpoB 762083 c.2277T>C synonymous_variant 0.33
rpoB 762086 c.2280G>C synonymous_variant 0.33
rpoB 762101 c.2295C>G synonymous_variant 0.26
rpoB 762114 p.Ile770Val missense_variant 0.32
rpoB 762122 c.2316C>T synonymous_variant 0.29
rpoB 762131 c.2325C>G synonymous_variant 0.31
rpoB 762137 c.2331C>T synonymous_variant 0.31
rpoB 762140 c.2334G>C synonymous_variant 0.31
rpoB 762143 c.2337T>C synonymous_variant 0.29
rpoB 762149 c.2343G>C synonymous_variant 0.29
rpoB 762156 p.Val784Ile missense_variant 0.29
rpoB 762167 c.2361T>C synonymous_variant 0.29
rpoB 762176 c.2370T>C synonymous_variant 0.24
rpoB 762185 c.2379G>C synonymous_variant 0.27
rpoB 762218 c.2412T>C synonymous_variant 0.33
rpoB 762233 c.2427G>C synonymous_variant 0.3
rpoB 762245 c.2439G>C synonymous_variant 0.36
rpoB 762284 c.2478G>C synonymous_variant 0.21
rpoB 762293 c.2487T>C synonymous_variant 0.21
rpoB 762296 c.2490G>C synonymous_variant 0.21
rpoB 762314 c.2508C>T synonymous_variant 0.19
rpoB 762317 c.2511A>G synonymous_variant 0.18
rpoB 762329 c.2523G>C synonymous_variant 0.17
rpoB 762338 c.2532T>C synonymous_variant 0.2
rpoB 762347 c.2541T>C synonymous_variant 0.21
rpoB 762362 p.Glu852Asp missense_variant 0.14
rpoB 762369 c.2563T>C synonymous_variant 0.15
rpoC 762434 c.-936T>C upstream_gene_variant 0.2
rpoC 762443 c.-927G>C upstream_gene_variant 0.23
rpoC 762449 c.-921C>G upstream_gene_variant 0.23
rpoC 762452 c.-918G>C upstream_gene_variant 0.23
rpoC 762470 c.-900G>C upstream_gene_variant 0.24
rpoC 762488 c.-882G>C upstream_gene_variant 0.14
rpoC 762491 c.-879T>C upstream_gene_variant 0.13
rpoC 762533 c.-837T>C upstream_gene_variant 0.15
rpoC 762536 c.-834T>C upstream_gene_variant 0.15
rpoC 762537 c.-833T>C upstream_gene_variant 0.16
rpoC 762551 c.-819C>T upstream_gene_variant 0.2
rpoC 762560 c.-810A>T upstream_gene_variant 0.21
rpoC 762563 c.-807G>T upstream_gene_variant 0.2
rpoB 762576 p.Gln924Glu missense_variant 0.17
rpoB 762879 p.Met1025Leu missense_variant 0.14
rpoC 762899 c.-471G>C upstream_gene_variant 0.18
rpoC 762917 c.-453C>G upstream_gene_variant 0.24
rpoC 762920 c.-450C>T upstream_gene_variant 0.24
rpoC 762923 c.-447C>G upstream_gene_variant 0.26
rpoC 762929 c.-441G>C upstream_gene_variant 0.24
rpoC 762959 c.-411G>C upstream_gene_variant 0.25
rpoC 762962 c.-408C>T upstream_gene_variant 0.25
rpoC 762983 c.-387C>T upstream_gene_variant 0.33
rpoC 762989 c.-381G>A upstream_gene_variant 0.31
rpoC 762995 c.-375G>T upstream_gene_variant 0.31
rpoC 763004 c.-366G>A upstream_gene_variant 0.32
rpoC 763007 c.-363C>T upstream_gene_variant 0.33
rpoC 763028 c.-342T>C upstream_gene_variant 0.34
rpoC 763031 c.-339T>C upstream_gene_variant 0.47
rpoC 763049 c.-321G>A upstream_gene_variant 0.35
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.32
rpoC 763070 c.-300T>C upstream_gene_variant 0.31
rpoC 763076 c.-294C>G upstream_gene_variant 0.3
rpoC 763079 c.-291C>G upstream_gene_variant 0.3
rpoC 763082 c.-288C>T upstream_gene_variant 0.3
rpoC 763085 c.-285C>G upstream_gene_variant 0.3
rpoC 763103 c.-267G>C upstream_gene_variant 0.31
rpoC 763115 c.-255T>C upstream_gene_variant 0.29
rpoC 763136 c.-234C>T upstream_gene_variant 0.2
rpoC 763148 c.-222G>C upstream_gene_variant 0.17
rpoC 763158 c.-212C>T upstream_gene_variant 0.23
rpoC 763166 c.-204A>G upstream_gene_variant 0.22
rpoC 763169 c.-201A>G upstream_gene_variant 0.22
rpoC 763181 c.-189G>C upstream_gene_variant 0.17
rpoC 763187 c.-183C>G upstream_gene_variant 0.17
rpoC 763190 c.-180C>T upstream_gene_variant 0.17
rpoC 763202 c.-168A>G upstream_gene_variant 0.17
rpoC 763205 c.-165G>C upstream_gene_variant 0.17
rpoC 763206 c.-164_-162delAGTinsTCG upstream_gene_variant 0.17
rpoC 763214 c.-156T>C upstream_gene_variant 0.17
rpoB 763227 p.Leu1141Met missense_variant 0.18
rpoC 763232 c.-138C>T upstream_gene_variant 0.19
rpoB 763235 p.Glu1143Asp missense_variant 0.19
rpoB 763241 p.Glu1145Asp missense_variant 0.2
rpoC 763250 c.-120C>T upstream_gene_variant 0.19
rpoC 763259 c.-111G>C upstream_gene_variant 0.18
rpoC 763265 c.-105G>T upstream_gene_variant 0.18
rpoC 763274 c.-96G>C upstream_gene_variant 0.17
rpoC 763283 c.-87T>C upstream_gene_variant 0.16
rpoC 763411 c.42T>C synonymous_variant 0.12
rpoC 763414 c.45T>G synonymous_variant 0.13
rpoC 763444 c.75T>C synonymous_variant 0.13
rpoC 763573 c.204G>C synonymous_variant 0.22
rpoC 763594 c.225C>T synonymous_variant 0.24
rpoC 763633 c.264T>C synonymous_variant 0.17
rpoC 763712 p.Gly115Trp missense_variant 0.15
rpoC 763844 p.Arg159Ser missense_variant 0.17
rpoC 764032 p.Asp221Glu missense_variant 0.13
rpoC 764040 p.Ser224Thr missense_variant 0.16
rpoC 764044 c.675T>C synonymous_variant 0.17
rpoC 764059 c.690G>T synonymous_variant 0.19
rpoC 764071 c.702G>C synonymous_variant 0.17
rpoC 764077 c.708C>G synonymous_variant 0.19
rpoC 764083 c.714A>G synonymous_variant 0.16
rpoC 764084 p.Asn239Val missense_variant 0.16
rpoC 764098 c.729A>G synonymous_variant 0.2
rpoC 764320 c.951C>T synonymous_variant 0.25
rpoC 764353 c.984G>T synonymous_variant 0.31
rpoC 764365 c.996C>T synonymous_variant 0.29
rpoC 764371 c.1002G>C synonymous_variant 0.29
rpoC 764377 c.1008C>G synonymous_variant 0.29
rpoC 764380 c.1011G>C synonymous_variant 0.29
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.31
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.42
rpoC 764410 c.1041G>C synonymous_variant 0.42
rpoC 764431 c.1062G>C synonymous_variant 0.56
rpoC 764434 c.1065A>G synonymous_variant 0.56
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.5
rpoC 764452 c.1083T>C synonymous_variant 0.36
rpoC 764458 c.1089G>C synonymous_variant 0.3
rpoC 764461 c.1092A>G synonymous_variant 0.33
rpoC 764485 c.1116G>C synonymous_variant 0.2
rpoC 764491 c.1122G>T synonymous_variant 0.21
rpoC 764497 c.1128A>G synonymous_variant 0.2
rpoC 764500 c.1131C>G synonymous_variant 0.2
rpoC 764521 c.1152T>C synonymous_variant 0.23
rpoC 764527 c.1158C>T synonymous_variant 0.23
rpoC 764530 c.1161C>T synonymous_variant 0.22
rpoC 764539 c.1170C>G synonymous_variant 0.21
rpoC 764548 c.1179G>T synonymous_variant 0.15
rpoC 764827 c.1458G>C synonymous_variant 0.15
rpoC 764858 c.1489T>C synonymous_variant 0.16
rpoC 764869 c.1500C>T synonymous_variant 0.17
rpoC 764878 c.1509C>G synonymous_variant 0.13
rpoC 764887 c.1518G>C synonymous_variant 0.14
rpoC 764888 c.1519T>C synonymous_variant 0.14
rpoC 764911 c.1542A>G synonymous_variant 0.14
rpoC 764912 p.Met515Leu missense_variant 0.14
rpoC 764923 c.1554A>G synonymous_variant 0.14
rpoC 765136 c.1767C>A synonymous_variant 0.15
rpoC 765886 c.2517C>G synonymous_variant 0.15
rpoC 765892 c.2523T>C synonymous_variant 0.15
rpoC 765898 c.2529C>T synonymous_variant 0.15
rpoC 765934 c.2565C>T synonymous_variant 0.15
rpoC 765937 c.2568T>C synonymous_variant 0.15
rpoC 765940 c.2571A>T synonymous_variant 0.16
rpoC 766345 c.2976T>C synonymous_variant 0.22
rpoC 766690 c.3321G>C synonymous_variant 0.13
rpoC 766702 c.3333G>C synonymous_variant 0.18
rpoC 766712 p.Ser1115Ala missense_variant 0.12
rpoC 766726 c.3357T>C synonymous_variant 0.13
rpoC 766738 c.3369G>T synonymous_variant 0.18
rpoC 766750 c.3381C>G synonymous_variant 0.2
rpoC 766765 c.3396A>C synonymous_variant 0.2
rpoC 766771 c.3402G>C synonymous_variant 0.2
rpoC 766774 c.3405T>C synonymous_variant 0.2
rpoC 766775 p.Arg1136Lys missense_variant 0.2
rpoC 766798 c.3429C>G synonymous_variant 0.25
rpoC 766804 c.3435A>G synonymous_variant 0.24
rpoC 766807 c.3438T>C synonymous_variant 0.24
rpoC 767098 c.3729T>C synonymous_variant 0.22
rpoC 767104 c.3735C>G synonymous_variant 0.2
rpoC 767106 p.Asn1246Met missense_variant 0.22
rpoC 767119 c.3750A>G synonymous_variant 0.36
rpoC 767155 c.3786C>G synonymous_variant 0.19
rpoC 767162 p.Asn1265Ala missense_variant 0.19
rpoC 767173 c.3804C>G synonymous_variant 0.19
rpoC 767174 p.Asn1269Asp missense_variant 0.19
rpoC 767180 p.Ala1271Gln missense_variant 0.19
rpoC 767185 c.3816G>C synonymous_variant 0.2
rpoC 767186 p.Gln1273Asn missense_variant 0.2
rpoC 767191 c.3822C>G synonymous_variant 0.21
rpoC 767197 c.3828G>A synonymous_variant 0.18
rpoC 767221 c.3852C>G synonymous_variant 0.16
mmpL5 775814 c.2667C>G synonymous_variant 0.12
mmpL5 775835 c.2646C>G synonymous_variant 0.31
mmpL5 775847 c.2634G>T synonymous_variant 0.36
mmpL5 775851 p.Ser877Thr missense_variant 0.36
mmpL5 775856 c.2625T>C synonymous_variant 0.33
mmpL5 775862 c.2619G>C synonymous_variant 0.33
mmpL5 775865 c.2616T>C synonymous_variant 0.38
mmpL5 775885 p.Ile866Leu missense_variant 0.43
mmpL5 775886 c.2595A>T synonymous_variant 0.43
mmpL5 775889 c.2592C>G synonymous_variant 0.46
mmpL5 775905 p.Lys859Arg missense_variant 0.55
mmpL5 775909 p.Leu858Ile missense_variant 0.64
mmpL5 775916 c.2565T>C synonymous_variant 0.67
mmpL5 775949 c.2532G>C synonymous_variant 0.39
mmpL5 775955 p.Ile842Val missense_variant 0.38
mmpL5 775961 c.2520C>G synonymous_variant 0.35
mmpL5 775975 p.Leu836Met missense_variant 0.31
mmpL5 775981 p.Leu834Met missense_variant 0.31
mmpL5 775982 p.Trp833Phe missense_variant 0.19
mmpL5 775990 c.2491C>T synonymous_variant 0.16
mmpL5 775997 c.2484T>C synonymous_variant 0.21
mmpL5 776039 c.2442C>G synonymous_variant 0.14
mmpL5 776100 p.Thr794Ile missense_variant 0.14
mmpL5 777289 p.Val398Leu missense_variant 0.18
mmpS5 778872 p.Leu12Met missense_variant 0.14
mmpL5 779124 c.-644C>T upstream_gene_variant 0.2
mmpL5 779145 c.-665G>T upstream_gene_variant 0.2
mmpR5 779171 p.Ala61Glu missense_variant 0.15
mmpR5 779185 p.Gly66Trp missense_variant 0.14
mmpS5 779615 c.-710C>G upstream_gene_variant 0.25
rpsL 781395 c.-165T>C upstream_gene_variant 0.47
rpsL 781595 c.36T>C synonymous_variant 0.17
rpsL 781598 c.39G>C synonymous_variant 0.18
rpsL 781605 p.Ile16Val missense_variant 0.19
rpsL 781608 p.Ser17Ala missense_variant 0.19
rpsL 781616 c.57C>G synonymous_variant 0.2
rpsL 781628 c.69T>C synonymous_variant 0.25
rpsL 781631 c.72G>C synonymous_variant 0.31
rpsL 781652 c.93T>C synonymous_variant 0.29
rpsL 781658 c.99A>G synonymous_variant 0.25
rpsL 781664 c.105C>T synonymous_variant 0.27
rpsL 781682 c.123T>C synonymous_variant 0.25
rpsL 781715 c.156T>C synonymous_variant 0.15
rpsL 781739 p.Gln60His missense_variant 0.17
rpsL 781743 p.Glu62* stop_gained 0.18
rpsL 781769 p.Glu70Asp missense_variant 0.15
rplC 800612 c.-197A>G upstream_gene_variant 0.16
rplC 800618 c.-191T>C upstream_gene_variant 0.17
rplC 800633 c.-176T>C upstream_gene_variant 0.19
rplC 800651 c.-158G>C upstream_gene_variant 0.15
rplC 800693 c.-116A>C upstream_gene_variant 0.14
rplC 800702 c.-107G>C upstream_gene_variant 0.14
rplC 800715 c.-94A>C upstream_gene_variant 0.14
rplC 800720 c.-89T>C upstream_gene_variant 0.14
rplC 800723 c.-86C>G upstream_gene_variant 0.15
rplC 800744 c.-65G>C upstream_gene_variant 0.14
rplC 800955 c.147C>A synonymous_variant 0.18
rplC 800992 p.Val62Ile missense_variant 0.2
rplC 801041 p.Arg78Leu missense_variant 0.18
fbiC 1303605 c.675C>G synonymous_variant 0.12
fbiC 1303606 p.Lys226Arg missense_variant 0.13
fbiC 1303614 c.684C>G synonymous_variant 0.13
fbiC 1305118 p.Gln730Lys missense_variant 0.17
Rv1258c 1406686 p.Val219Ile missense_variant 0.78
embR 1416494 p.Gly285Val missense_variant 0.15
embR 1416594 p.Glu252* stop_gained 0.15
atpE 1460917 c.-128C>A upstream_gene_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.21
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.2
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.2
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.18
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 0.3
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.32
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.35
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.32
rrs 1472029 n.184C>T non_coding_transcript_exon_variant 0.26
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.25
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.26
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.25
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.26
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.26
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.35
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.32
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.59
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.61
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.62
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.5
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.47
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.44
rrs 1472290 n.445C>A non_coding_transcript_exon_variant 0.38
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.58
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.54
rrs 1472324 n.479G>T non_coding_transcript_exon_variant 0.46
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.54
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.53
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.73
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.44
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.42
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.42
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.36
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.62
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.31
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.31
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.31
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.31
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.27
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.27
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.27
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.27
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.3
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.3
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.27
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.26
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.26
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.26
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.26
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.27
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.27
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.62
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.64
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.66
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.54
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.57
rrl 1473390 n.-268A>T upstream_gene_variant 0.17
rrl 1473500 n.-158C>A upstream_gene_variant 0.18
rrl 1473697 n.40C>T non_coding_transcript_exon_variant 0.21
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.21
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.29
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.25
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.32
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.35
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.41
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.5
rrl 1473811 n.154C>A non_coding_transcript_exon_variant 0.21
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.5
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.5
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.5
rrl 1473828 n.171G>C non_coding_transcript_exon_variant 0.45
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.45
rrl 1473830 n.173T>G non_coding_transcript_exon_variant 0.45
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.45
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.45
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.45
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.45
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.38
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.38
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.22
rrl 1473925 n.268G>T non_coding_transcript_exon_variant 0.25
rrl 1474134 n.477G>T non_coding_transcript_exon_variant 0.18
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.23
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.31
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.31
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.33
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.33
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.33
rrl 1474188 n.531G>T non_coding_transcript_exon_variant 0.15
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.82
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.62
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.62
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.25
rrl 1474439 n.782A>G non_coding_transcript_exon_variant 0.25
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 0.21
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.21
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.21
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.21
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.21
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.2
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.2
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.26
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.21
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.24
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.3
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.53
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.53
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.53
rrl 1474709 n.1053delT non_coding_transcript_exon_variant 0.62
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.62
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.67
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.73
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.71
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.64
rrl 1474974 n.1317G>T non_coding_transcript_exon_variant 0.17
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.2
rrl 1475108 n.1451C>G non_coding_transcript_exon_variant 0.5
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.33
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.25
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.25
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.27
rrl 1475221 n.1564C>G non_coding_transcript_exon_variant 0.15
rrl 1475286 n.1629T>C non_coding_transcript_exon_variant 0.13
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.24
rrl 1475296 n.1639G>T non_coding_transcript_exon_variant 0.32
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.43
rrl 1475343 n.1686A>G non_coding_transcript_exon_variant 0.54
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.56
rrl 1475358 n.1701T>C non_coding_transcript_exon_variant 0.58
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.56
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.57
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 0.57
rrl 1475381 n.1724G>T non_coding_transcript_exon_variant 0.57
rrl 1475382 n.1725A>C non_coding_transcript_exon_variant 0.57
rrl 1475395 n.1738T>G non_coding_transcript_exon_variant 0.61
rrl 1475396 n.1739C>G non_coding_transcript_exon_variant 0.61
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 0.61
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.61
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.69
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.69
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.66
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.69
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.69
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.69
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.74
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.75
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.71
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.63
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.27
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.72
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.76
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.76
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.76
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.76
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.74
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.75
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.59
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.59
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.67
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.63
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.66
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.66
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.66
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.63
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.63
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.72
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.66
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.69
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.67
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.66
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.67
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.64
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.64
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.67
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.68
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.67
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.67
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.67
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.72
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.71
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.74
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.72
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.73
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.68
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.68
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.33
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.27
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.22
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.18
rrl 1476684 n.3027C>A non_coding_transcript_exon_variant 0.18
rrl 1476761 n.3104G>T non_coding_transcript_exon_variant 0.17
inhA 1673544 c.-658G>T upstream_gene_variant 0.25
inhA 1673778 c.-424C>A upstream_gene_variant 0.27
inhA 1673973 c.-229G>C upstream_gene_variant 0.17
fabG1 1674006 p.Asp189Glu missense_variant 0.17
inhA 1674774 c.573A>G synonymous_variant 0.13
inhA 1674780 c.579T>G synonymous_variant 0.14
inhA 1674789 c.588G>C synonymous_variant 0.14
inhA 1674795 c.594G>C synonymous_variant 0.14
inhA 1674801 c.600T>C synonymous_variant 0.15
inhA 1674804 c.603G>C synonymous_variant 0.19
inhA 1674810 c.609C>G synonymous_variant 0.23
inhA 1674822 c.621C>G synonymous_variant 0.2
inhA 1674827 p.Glu209Ala missense_variant 0.17
inhA 1674839 p.Ala213Asp missense_variant 0.17
inhA 1674846 p.Ile215Met missense_variant 0.18
inhA 1674848 p.Gln216Arg missense_variant 0.18
inhA 1674858 c.657G>A synonymous_variant 0.2
inhA 1674879 c.678T>A synonymous_variant 0.22
inhA 1674883 p.Ile228Val missense_variant 0.21
inhA 1674904 p.Ala235Pro missense_variant 0.18
inhA 1674909 c.708G>C synonymous_variant 0.12
rpsA 1833838 c.297G>C synonymous_variant 0.15
rpsA 1833841 c.300C>G synonymous_variant 0.15
rpsA 1833847 c.306C>G synonymous_variant 0.17
rpsA 1833856 c.315A>G synonymous_variant 0.17
rpsA 1833862 c.321G>T synonymous_variant 0.17
rpsA 1833928 c.387G>C synonymous_variant 0.17
rpsA 1833970 c.429G>C synonymous_variant 0.13
rpsA 1833979 c.438T>C synonymous_variant 0.17
rpsA 1833991 c.450C>A synonymous_variant 0.17
rpsA 1834000 c.459G>C synonymous_variant 0.13
rpsA 1834102 c.561T>C synonymous_variant 0.13
rpsA 1834108 c.567C>G synonymous_variant 0.17
rpsA 1834177 c.636A>C synonymous_variant 0.2
rpsA 1834213 c.672G>C synonymous_variant 0.31
rpsA 1834231 c.690T>C synonymous_variant 0.31
rpsA 1834234 c.693G>C synonymous_variant 0.31
rpsA 1834240 c.699T>C synonymous_variant 0.37
rpsA 1834249 c.708T>C synonymous_variant 0.32
rpsA 1834261 c.720A>G synonymous_variant 0.37
rpsA 1834264 c.723G>C synonymous_variant 0.37
rpsA 1834279 c.738C>T synonymous_variant 0.38
rpsA 1834294 c.753G>C synonymous_variant 0.4
rpsA 1834298 p.Gln253Thr missense_variant 0.36
rpsA 1834303 c.762T>C synonymous_variant 0.39
rpsA 1834306 c.765T>C synonymous_variant 0.39
rpsA 1834348 c.807T>C synonymous_variant 0.24
rpsA 1834361 c.820T>C synonymous_variant 0.17
rpsA 1834366 c.825A>G synonymous_variant 0.14
rpsA 1834387 c.846C>T synonymous_variant 0.14
rpsA 1834396 c.855G>C synonymous_variant 0.13
rpsA 1834411 c.870T>C synonymous_variant 0.13
rpsA 1834417 c.876G>C synonymous_variant 0.13
rpsA 1834423 c.882G>C synonymous_variant 0.12
rpsA 1834456 c.915T>G synonymous_variant 0.13
rpsA 1834468 c.927A>G synonymous_variant 0.14
rpsA 1834513 c.972C>G synonymous_variant 0.15
rpsA 1834520 p.Ala327Ser missense_variant 0.15
rpsA 1834528 c.987T>C synonymous_variant 0.15
tlyA 1917927 c.-13G>T upstream_gene_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 0.39
ndh 2102089 p.Phe318Leu missense_variant 0.18
ndh 2102991 p.Val18Leu missense_variant 0.13
ndh 2103147 c.-105G>T upstream_gene_variant 0.14
katG 2153974 p.Ala713Val missense_variant 0.14
katG 2154059 p.Gly685Cys missense_variant 0.17
katG 2154170 p.Glu648Lys missense_variant 0.22
katG 2154724 p.Arg463Leu missense_variant 0.16
katG 2155936 p.Gly59Val missense_variant 0.14
PPE35 2167926 p.Leu896Ser missense_variant 0.17
PPE35 2168802 p.Gly604Val missense_variant 0.19
PPE35 2169275 c.1338G>T synonymous_variant 0.2
PPE35 2169929 c.684C>A synonymous_variant 0.17
Rv1979c 2222422 p.Pro248Gln missense_variant 0.22
Rv1979c 2222861 p.Ala102Thr missense_variant 0.14
Rv1979c 2222868 c.297C>A synonymous_variant 0.15
Rv1979c 2222873 p.His98Asn missense_variant 0.14
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.33
pncA 2288710 p.Ala178Thr missense_variant 0.18
pncA 2289620 c.-379G>A upstream_gene_variant 0.14
pncA 2290165 c.-924C>A upstream_gene_variant 0.14
kasA 2517941 c.-174C>G upstream_gene_variant 0.18
kasA 2517950 c.-165C>G upstream_gene_variant 0.18
kasA 2517962 c.-153C>G upstream_gene_variant 0.2
kasA 2517968 c.-147T>C upstream_gene_variant 0.19
kasA 2517974 c.-141T>C upstream_gene_variant 0.15
kasA 2518711 c.597A>G synonymous_variant 0.17
kasA 2518714 c.600A>T synonymous_variant 0.17
kasA 2518715 p.Pro201Ala missense_variant 0.19
kasA 2518732 c.618C>G synonymous_variant 0.19
kasA 2518747 c.633C>G synonymous_variant 0.16
kasA 2518756 c.642G>T synonymous_variant 0.17
kasA 2518759 c.645C>G synonymous_variant 0.17
kasA 2518780 p.Glu222Asp missense_variant 0.21
kasA 2518783 c.669T>G synonymous_variant 0.18
kasA 2518787 p.Arg225Gly missense_variant 0.2
kasA 2518792 c.678C>G synonymous_variant 0.18
kasA 2518795 c.681C>G synonymous_variant 0.19
kasA 2518798 c.684G>T synonymous_variant 0.18
kasA 2518813 c.699C>T synonymous_variant 0.23
kasA 2518816 c.702C>T synonymous_variant 0.25
kasA 2518822 c.708C>G synonymous_variant 0.24
kasA 2518825 c.711T>C synonymous_variant 0.24
kasA 2518828 c.714G>C synonymous_variant 0.25
kasA 2518849 c.735G>C synonymous_variant 0.17
kasA 2518853 p.Leu247Ile missense_variant 0.17
kasA 2519275 c.1161C>A synonymous_variant 0.17
eis 2715276 c.57G>T synonymous_variant 0.15
folC 2746428 p.Leu391Met missense_variant 0.17
folC 2747074 c.525G>T synonymous_variant 0.14
folC 2747520 p.Leu27Met missense_variant 0.22
ribD 2986659 c.-180G>T upstream_gene_variant 0.15
Rv2752c 3064944 c.1248G>A synonymous_variant 0.17
Rv2752c 3065567 p.Pro209Thr missense_variant 0.14
Rv2752c 3065735 p.Ala153Ser missense_variant 0.14
Rv2752c 3065951 p.His81Asn missense_variant 0.22
thyA 3073947 c.525G>C synonymous_variant 0.14
thyA 3073953 c.519T>C synonymous_variant 0.15
thyA 3073956 c.516G>C synonymous_variant 0.17
thyA 3073959 c.513T>C synonymous_variant 0.18
thyA 3073968 c.504C>G synonymous_variant 0.2
thyA 3073977 c.495A>G synonymous_variant 0.22
thyA 3073983 c.489C>G synonymous_variant 0.22
thyA 3073989 c.483T>C synonymous_variant 0.25
thyA 3073993 c.478_479delAGinsTC synonymous_variant 0.25
thyA 3073999 p.Arg158Lys missense_variant 0.22
thyA 3074004 c.468T>C synonymous_variant 0.2
thyA 3074031 c.441T>C synonymous_variant 0.2
thyA 3074034 c.438T>C synonymous_variant 0.2
thyA 3074037 c.435C>G synonymous_variant 0.2
thyA 3074046 c.426G>C synonymous_variant 0.18
ald 3086668 c.-152G>T upstream_gene_variant 0.18
ald 3086699 c.-121C>T upstream_gene_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 0.35
ald 3086814 c.-6G>A upstream_gene_variant 0.14
ald 3087348 p.Gly177Cys missense_variant 0.2
ald 3087423 p.Asp202Tyr missense_variant 0.25
Rv3083 3449484 p.Lys327Asn missense_variant 0.2
Rv3083 3449515 p.Glu338Tyr missense_variant 0.2
Rv3083 3449521 p.Asp340Tyr missense_variant 0.2
Rv3083 3449538 c.1035G>T synonymous_variant 0.18
Rv3083 3449938 p.Asp479Asn missense_variant 0.15
Rv3083 3449984 p.Ala494Glu missense_variant 0.18
fprA 3473996 c.-11_-10insA upstream_gene_variant 0.23
fprA 3474365 p.Pro120Gln missense_variant 0.17
fprA 3474517 p.Asp171Tyr missense_variant 0.15
fprA 3475228 p.Asp408Tyr missense_variant 0.22
Rv3236c 3613017 p.Pro34Thr missense_variant 0.17
fbiB 3640617 c.-918G>T upstream_gene_variant 0.17
fbiA 3640721 p.Pro60Gln missense_variant 0.17
fbiA 3641468 p.Leu309Pro missense_variant 0.14
fbiB 3641561 c.27C>A synonymous_variant 0.18
fbiB 3641582 c.48C>A synonymous_variant 0.15
fbiB 3641604 p.Arg24Ser missense_variant 0.17
fbiB 3641832 p.Gly100Trp missense_variant 0.2
alr 3841135 p.Glu96* stop_gained 0.15
alr 3841137 p.Asp95Gly missense_variant 0.14
rpoA 3877617 c.891G>C synonymous_variant 0.17
rpoA 3877638 c.870T>G synonymous_variant 0.22
rpoA 3877647 c.861C>T synonymous_variant 0.22
rpoA 3877656 c.852T>C synonymous_variant 0.25
rpoA 3877662 c.846C>T synonymous_variant 0.25
rpoA 3877665 c.843C>G synonymous_variant 0.27
rpoA 3877668 c.840A>G synonymous_variant 0.25
rpoA 3877674 c.834C>T synonymous_variant 0.27
rpoA 3877679 p.Ala277Ser missense_variant 0.27
rpoA 3877686 c.822A>G synonymous_variant 0.18
rpoA 3877692 c.816G>C synonymous_variant 0.2
rpoA 3877704 c.804G>T synonymous_variant 0.19
rpoA 3877728 c.780C>G synonymous_variant 0.14
rpoA 3877734 c.774G>C synonymous_variant 0.14
rpoA 3877737 c.771G>C synonymous_variant 0.14
rpoA 3877743 c.765T>C synonymous_variant 0.13
rpoA 3877875 c.633T>C synonymous_variant 0.18
rpoA 3877881 c.627G>C synonymous_variant 0.18
rpoA 3877887 c.621G>C synonymous_variant 0.18
rpoA 3877893 c.615C>T synonymous_variant 0.19
rpoA 3877905 c.603A>G synonymous_variant 0.2
rpoA 3877908 c.600T>C synonymous_variant 0.19
rpoA 3877920 c.588G>C synonymous_variant 0.19
rpoA 3877926 c.582G>C synonymous_variant 0.18
rpoA 3878157 c.351C>G synonymous_variant 0.21
rpoA 3878160 c.348C>G synonymous_variant 0.21
rpoA 3878163 c.345C>T synonymous_variant 0.22
rpoA 3878184 c.324C>T synonymous_variant 0.24
rpoA 3878193 c.315T>C synonymous_variant 0.25
rpoA 3878197 p.Glu104Ala missense_variant 0.24
rpoA 3878205 c.303T>C synonymous_variant 0.21
rpoA 3878217 c.291A>G synonymous_variant 0.23
rpoA 3878244 c.264G>A synonymous_variant 0.2
rpoA 3878253 c.255G>C synonymous_variant 0.2
rpoA 3878256 c.252G>C synonymous_variant 0.16
rpoA 3878262 p.Ser82Gly missense_variant 0.15
rpoA 3878271 c.237T>C synonymous_variant 0.16
rpoA 3878283 p.Glu75Asp missense_variant 0.16
rpoA 3878292 c.216T>C synonymous_variant 0.15
rpoA 3878575 c.-68C>T upstream_gene_variant 0.18
rpoA 3878621 c.-114C>A upstream_gene_variant 0.22
clpC1 4038263 p.Glu814Asp missense_variant 0.21
clpC1 4038596 c.2109A>G synonymous_variant 0.14
clpC1 4038605 c.2100G>A synonymous_variant 0.15
clpC1 4038613 p.Asn698His missense_variant 0.16
clpC1 4038620 p.Gln695His missense_variant 0.15
clpC1 4038623 c.2082A>G synonymous_variant 0.15
clpC1 4038647 c.2058T>C synonymous_variant 0.15
clpC1 4038704 c.2001T>C synonymous_variant 0.15
clpC1 4038707 c.1998C>G synonymous_variant 0.15
clpC1 4038710 c.1995G>C synonymous_variant 0.18
clpC1 4038713 c.1992T>C synonymous_variant 0.18
clpC1 4038812 c.1893T>C synonymous_variant 0.13
clpC1 4038860 c.1845G>C synonymous_variant 0.15
clpC1 4038878 c.1827A>G synonymous_variant 0.14
clpC1 4038881 c.1824C>G synonymous_variant 0.14
clpC1 4038890 c.1815G>A synonymous_variant 0.16
clpC1 4038905 c.1800A>C synonymous_variant 0.17
clpC1 4038908 c.1797C>G synonymous_variant 0.17
clpC1 4038911 c.1794G>T synonymous_variant 0.16
clpC1 4038914 c.1791G>C synonymous_variant 0.17
clpC1 4038917 c.1788C>T synonymous_variant 0.16
clpC1 4038923 c.1782A>G synonymous_variant 0.16
clpC1 4038965 c.1740T>C synonymous_variant 0.16
clpC1 4038971 c.1734T>C synonymous_variant 0.16
clpC1 4038974 c.1731T>C synonymous_variant 0.17
clpC1 4038989 c.1716T>C synonymous_variant 0.15
clpC1 4039022 c.1683A>G synonymous_variant 0.13
clpC1 4039064 c.1641C>T synonymous_variant 0.2
clpC1 4039067 c.1638G>C synonymous_variant 0.2
clpC1 4039079 c.1626C>G synonymous_variant 0.19
clpC1 4039085 c.1620A>G synonymous_variant 0.16
clpC1 4039091 c.1614G>C synonymous_variant 0.16
clpC1 4039097 c.1608G>C synonymous_variant 0.16
clpC1 4039112 c.1593C>G synonymous_variant 0.15
clpC1 4039118 c.1587C>G synonymous_variant 0.15
clpC1 4039121 c.1584T>C synonymous_variant 0.15
clpC1 4039142 c.1563A>G synonymous_variant 0.2
clpC1 4039145 c.1560G>C synonymous_variant 0.21
clpC1 4039169 p.Glu512Asp missense_variant 0.24
clpC1 4039183 c.1522T>C synonymous_variant 0.16
clpC1 4039187 c.1518G>C synonymous_variant 0.16
clpC1 4039262 p.Asp481Glu missense_variant 0.18
clpC1 4039267 p.Asp480Asn missense_variant 0.15
clpC1 4039832 c.873C>G synonymous_variant 0.13
clpC1 4039865 c.840T>C synonymous_variant 0.16
clpC1 4039931 c.774T>C synonymous_variant 0.21
clpC1 4039934 c.771G>C synonymous_variant 0.21
clpC1 4039937 c.768G>C synonymous_variant 0.21
clpC1 4039946 c.759A>C synonymous_variant 0.19
clpC1 4039949 c.756G>C synonymous_variant 0.2
clpC1 4039952 c.753T>C synonymous_variant 0.19
clpC1 4039979 c.726C>G synonymous_variant 0.19
clpC1 4039991 c.714G>C synonymous_variant 0.2
clpC1 4040015 c.690G>C synonymous_variant 0.26
clpC1 4040021 c.684A>C synonymous_variant 0.23
clpC1 4040024 c.681A>G synonymous_variant 0.23
clpC1 4040030 c.675C>G synonymous_variant 0.23
clpC1 4040033 c.672G>C synonymous_variant 0.25
clpC1 4040042 c.663C>T synonymous_variant 0.29
clpC1 4040057 c.648C>T synonymous_variant 0.26
clpC1 4040087 c.618G>C synonymous_variant 0.22
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.22
clpC1 4040093 c.612C>T synonymous_variant 0.21
clpC1 4040144 c.561G>C synonymous_variant 0.24
clpC1 4040147 c.558A>G synonymous_variant 0.22
clpC1 4040153 c.552A>G synonymous_variant 0.18
clpC1 4040522 c.183T>C synonymous_variant 0.14
clpC1 4040531 c.174T>C synonymous_variant 0.14
clpC1 4040537 c.168G>C synonymous_variant 0.15
panD 4043876 p.Leu136Ile missense_variant 0.18
panD 4044324 c.-43C>G upstream_gene_variant 0.18
panD 4044341 c.-60C>A upstream_gene_variant 0.2
panD 4044376 c.-95C>A upstream_gene_variant 0.25
embC 4240665 p.Trp268Leu missense_variant 0.14
embC 4240699 c.837C>T synonymous_variant 0.17
embC 4240774 c.912C>G synonymous_variant 0.15
embC 4240777 p.Glu305Asp missense_variant 0.15
embC 4240780 c.918T>C synonymous_variant 0.15
embC 4240783 c.921G>C synonymous_variant 0.15
embC 4240789 c.927T>C synonymous_variant 0.18
embC 4240819 c.957A>C synonymous_variant 0.3
embC 4240822 c.960C>G synonymous_variant 0.3
embC 4240831 c.969T>G synonymous_variant 0.3
embC 4240855 c.993G>C synonymous_variant 0.2
embC 4240857 p.Ala332Gly missense_variant 0.2
embC 4241880 p.Leu673Pro missense_variant 0.15
embA 4244061 p.Leu277Ile missense_variant 0.15
embA 4244183 c.951G>T synonymous_variant 0.17
embA 4244408 c.1176G>T synonymous_variant 0.18
embA 4244631 p.Thr467Ala missense_variant 0.12
embB 4245662 c.-852G>T upstream_gene_variant 0.18
embB 4245842 c.-672G>C upstream_gene_variant 0.18
embB 4246448 c.-66C>A upstream_gene_variant 0.2
embB 4248202 c.1689T>A synonymous_variant 0.17
embB 4248311 p.Ala600Ser missense_variant 0.15
embB 4248506 p.Gly665Trp missense_variant 0.25
embB 4248630 p.Pro706Leu missense_variant 0.15
embB 4248853 c.2340G>T synonymous_variant 0.22
embB 4248880 c.2367G>T synonymous_variant 0.2
embB 4249019 p.Gly836Leu missense_variant 0.2
embB 4249154 p.Gly881Ser missense_variant 0.18
embB 4249189 p.Tyr892* stop_gained 0.15
embB 4249319 c.2806C>A synonymous_variant 0.15
embB 4249497 p.Pro995Gln missense_variant 0.3
aftB 4267528 p.Ala437Ser missense_variant 0.18
aftB 4267755 p.Lys361Met missense_variant 0.14
aftB 4269123 c.-287T>G upstream_gene_variant 0.16
aftB 4269129 c.-293G>C upstream_gene_variant 0.15
aftB 4269141 c.-307_-305delTTGinsCTC upstream_gene_variant 0.15
aftB 4269144 c.-308C>G upstream_gene_variant 0.14
ubiA 4269149 p.Val229Leu missense_variant 0.15
aftB 4269171 c.-335C>G upstream_gene_variant 0.21
aftB 4269177 c.-341G>C upstream_gene_variant 0.2
ubiA 4269186 p.Thr216Ser missense_variant 0.2
ubiA 4269199 p.Ser212Asn missense_variant 0.18
aftB 4269201 c.-365A>G upstream_gene_variant 0.18
aftB 4269210 c.-374G>A upstream_gene_variant 0.17
ubiA 4269220 p.Ala205Lys missense_variant 0.19
aftB 4269222 c.-386T>C upstream_gene_variant 0.19
aftB 4269234 c.-398A>G upstream_gene_variant 0.22
ubiA 4269238 p.Ala199Val missense_variant 0.23
aftB 4269240 c.-404G>C upstream_gene_variant 0.23
ubiA 4269243 p.His197Gln missense_variant 0.23
aftB 4269249 c.-413G>A upstream_gene_variant 0.24
aftB 4269258 c.-422C>T upstream_gene_variant 0.25
aftB 4269264 c.-428C>T upstream_gene_variant 0.21
ubiA 4269297 p.Ile179Met missense_variant 0.15
ubiA 4269623 p.Leu71Ile missense_variant 0.14
ethA 4327296 p.Tyr60His missense_variant 0.14
ethA 4328223 c.-750C>T upstream_gene_variant 0.15
ethA 4328243 c.-770C>A upstream_gene_variant 0.18
whiB6 4338595 c.-75delG upstream_gene_variant 0.29
gid 4407923 p.Leu94Ile missense_variant 0.17
gid 4407927 p.Glu92Asp missense_variant 0.17
gid 4407951 c.252G>A synonymous_variant 0.15
gid 4407964 p.Ala80Glu missense_variant 0.14