lineage | Count |
---|---|
132 | |
lineage4.9 | 38 |
lineage4 | 60 |
La1 | 2 |
La1.8.1 | 5 |
lineage6.1.1 | 2 |
lineage4.1.2.1 | 14 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
lineage4.9;La1.3 | 1 |
lineage3 | 8 |
lineage1.1.2 | 3 |
lineage2.2.1 | 30 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.9.1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage2.2 | 5 |
lineage4.3.2 | 2 |
lineage5.2 | 2 |
lineage4.6.2.2 | 3 |
lineage4.8;lineage4.1 | 2 |
lineage4.8 | 2 |
lineage6.1.3 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1.1 | 5 |
lineage1.1.1 | 1 |
lineage4.5 | 2 |
lineage4;lineage2.2 | 1 |
La1.7.1 | 1 |
lineage4.9;La1 | 1 |
lineage4.2;La1.7 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
La1.2 | 1 |
lineage4.1 | 1 |
lineage4.3.4.2.1 | 4 |
lineage3;lineage2.1 | 1 |
lineage2.1 | 3 |
lineage1.2.1.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage3.1.3 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage4.7 | 2 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1 | 1 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.3.3 | 2 |
La2 | 1 |
lineage4.1.2 | 2 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 368 |
ID | Drug resistance | Lineage | Country iso2 | ERR1034634 | HR-TB | None | ERR1035122 | Sensitive | None | ERR3283021 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283027 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283025 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3445504 | HR-TB | None | ERR5336148 | Other | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR400336 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR387051 | HR-TB | None | ERR400326 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR400345 | Other | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4024991 | Other | None | ERR405209 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797474 | Other | None | ERR6358837 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4798431 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR4798099 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4812155 | Sensitive | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR6359045 | HR-TB | None | ERR6866410 | Sensitive | None | ERR702406 | HR-TB | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR736839 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736867 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736848 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR736872 | Sensitive | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9119669 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9634265 | Sensitive | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786843 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | ERR9787165 | Other | lineage6 | None | ERR990545 | Other | lineage3 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172310 | HR-TB | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR16370633 | Sensitive | lineage2.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR17658565 | Other | lineage3 | None | SRR1640750 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR21662825 | Sensitive | lineage2.2.1 | None | SRR8692905 | HR-TB | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR19314692 | Sensitive | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR8692887 | Other | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR4815604 | HR-TB | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR23961549 | Other | La1.2 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675482 | HR-TB | None | SRR3675465 | HR-TB | None | ERR176779 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3085255 | Sensitive | lineage2.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3086350 | Sensitive | lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675221 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675229 | Other | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675383 | HR-TB | None | SRR3675387 | Sensitive | None | ERR176740 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | SRR3675456 | HR-TB | None | SRR3675547 | Other | lineage4.9 | None | SRR3675522 | Other | None | ERR4816999 | Other | None | SRR3675455 | Sensitive | lineage4 | None | ERR212001 | HR-TB | None | SRR3675545 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675572 | Other | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818110 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818615 | Other | None | ERR4818929 | HR-TB | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5007188 | Other | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341455 | Sensitive | lineage4 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR2514692 | Other | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341313 | HR-TB | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341315 | Sensitive | None | SRR5341323 | Sensitive | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341470 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6045526 | HR-TB | None | SRR6045577 | Sensitive | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6046015 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6046066 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045320 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046397 | Other | None | SRR6325444 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046514 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6511621 | HR-TB | None | SRR6325442 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831638 | Sensitive | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR323036 | HR-TB | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR323038 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None |
---|