TB-Profiler result

Run: SRR5341465
Summary

Run ID: SRR5341465

Sample name:

Date: 04-04-2023 10:23:11

Number of reads: 2147621

Percentage reads mapped: 37.34

Strain: lineage2.2.1

Drug-resistance: Pre-XDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.98
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.99
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7582 p.Asp94Gly missense_variant 0.61 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761155 p.Ser450Leu missense_variant 0.56 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 0.54 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.34 streptomycin
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
pncA 2288713 p.Thr177Pro missense_variant 1.0 pyrazinamide
thyX 3067961 c.-16C>T upstream_gene_variant 0.98 para-aminosalicylic_acid
embB 4247429 p.Met306Val missense_variant 0.92 ethambutol
thyA 3073347 c.-874_*332del transcript_ablation 1.0 para-aminosalicylic_acid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5819 c.580C>T synonymous_variant 0.16
gyrB 5824 c.585A>G synonymous_variant 0.17
gyrB 5848 c.609G>C synonymous_variant 0.15
gyrB 6097 c.858G>A synonymous_variant 0.18
gyrB 6100 c.861G>C synonymous_variant 0.2
gyrB 6109 c.870G>C synonymous_variant 0.36
gyrB 6115 c.876A>G synonymous_variant 0.39
gyrB 6123 p.Ala295Gly missense_variant 0.43
gyrB 6127 c.888G>T synonymous_variant 0.39
gyrB 6130 c.891T>C synonymous_variant 0.4
gyrB 6133 c.894G>C synonymous_variant 0.38
gyrB 6175 c.936G>A synonymous_variant 0.24
gyrB 6181 c.942C>A synonymous_variant 0.14
gyrA 6523 c.-779G>C upstream_gene_variant 0.24
gyrA 6526 c.-776T>C upstream_gene_variant 0.25
gyrA 6532 c.-770C>T upstream_gene_variant 0.33
gyrA 6547 c.-755T>C upstream_gene_variant 0.42
gyrA 6550 c.-752A>T upstream_gene_variant 0.4
gyrA 6551 c.-751T>C upstream_gene_variant 0.4
gyrA 6571 c.-731T>C upstream_gene_variant 0.46
gyrA 6577 c.-725T>C upstream_gene_variant 0.43
gyrA 6583 c.-719G>C upstream_gene_variant 0.47
gyrB 6590 p.Arg451Ser missense_variant 0.37
gyrA 6601 c.-701A>G upstream_gene_variant 0.26
gyrA 6607 c.-695T>C upstream_gene_variant 0.16
gyrA 6700 c.-602T>C upstream_gene_variant 0.21
gyrA 6703 c.-599G>C upstream_gene_variant 0.2
gyrA 6706 c.-596G>A upstream_gene_variant 0.19
gyrA 6709 c.-593A>G upstream_gene_variant 0.23
gyrA 6712 c.-590G>C upstream_gene_variant 0.19
gyrA 6727 c.-575G>T upstream_gene_variant 0.19
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.19
gyrA 6745 c.-557T>C upstream_gene_variant 0.17
gyrA 6760 c.-542G>C upstream_gene_variant 0.17
gyrA 6769 c.-533C>T upstream_gene_variant 0.18
gyrA 6775 c.-527G>C upstream_gene_variant 0.18
gyrA 6793 c.-509T>C upstream_gene_variant 0.28
gyrB 6797 p.Gly520Thr missense_variant 0.29
gyrA 6808 c.-494C>T upstream_gene_variant 0.33
gyrA 6811 c.-491C>T upstream_gene_variant 0.31
gyrA 6838 c.-464C>G upstream_gene_variant 0.2
gyrA 6841 c.-461T>C upstream_gene_variant 0.23
gyrA 6844 c.-458T>G upstream_gene_variant 0.24
gyrA 6853 c.-449A>G upstream_gene_variant 0.17
gyrA 7153 c.-149G>T upstream_gene_variant 0.33
gyrA 7159 c.-143C>T upstream_gene_variant 0.32
gyrA 7162 c.-140C>T upstream_gene_variant 0.34
gyrA 7165 c.-137C>T upstream_gene_variant 0.36
gyrA 7168 c.-134C>G upstream_gene_variant 0.38
gyrA 7178 c.-124T>C upstream_gene_variant 0.47
gyrB 7210 p.Asp657Glu missense_variant 0.43
gyrA 7213 c.-89G>C upstream_gene_variant 0.4
gyrA 7216 c.-86G>A upstream_gene_variant 0.38
gyrA 7225 c.-77T>C upstream_gene_variant 0.28
gyrA 7234 c.-68C>T upstream_gene_variant 0.28
gyrA 7243 c.-59G>A upstream_gene_variant 0.2
gyrA 7246 c.-56T>C upstream_gene_variant 0.14
gyrA 7355 c.54T>C synonymous_variant 0.24
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7382 c.81C>T synonymous_variant 0.49
gyrA 7391 c.90C>T synonymous_variant 0.46
gyrA 7394 c.93T>C synonymous_variant 0.47
gyrA 7397 c.96G>C synonymous_variant 0.47
gyrA 7406 c.105G>C synonymous_variant 0.49
gyrA 7412 c.111C>G synonymous_variant 0.45
gyrA 7433 c.132G>A synonymous_variant 0.34
gyrA 7442 c.141G>C synonymous_variant 0.25
gyrA 7457 c.156T>C synonymous_variant 0.32
gyrA 7463 c.162G>C synonymous_variant 0.35
gyrA 7472 c.171T>C synonymous_variant 0.37
gyrA 7475 c.174A>G synonymous_variant 0.36
gyrA 7480 p.Phe60Tyr missense_variant 0.35
gyrA 7484 c.183T>C synonymous_variant 0.42
gyrA 7499 c.198G>C synonymous_variant 0.53
gyrA 7526 c.225G>C synonymous_variant 0.55
gyrA 7532 c.231T>G synonymous_variant 0.53
gyrA 7541 c.240C>G synonymous_variant 0.52
gyrA 7547 c.246C>T synonymous_variant 0.49
gyrA 7565 c.264C>T synonymous_variant 0.47
gyrA 7569 p.Ala90Ser missense_variant 0.49
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.27
gyrA 7595 c.294C>G synonymous_variant 0.27
gyrA 7607 c.306C>G synonymous_variant 0.24
gyrA 7613 c.312G>A synonymous_variant 0.18
gyrA 7622 c.321C>T synonymous_variant 0.19
gyrA 7631 c.330G>C synonymous_variant 0.14
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.2
gyrA 7763 c.462T>G synonymous_variant 0.41
gyrA 7775 c.474C>T synonymous_variant 0.48
gyrA 7784 c.483A>G synonymous_variant 0.5
gyrA 7790 c.489G>C synonymous_variant 0.53
gyrA 7796 c.495G>T synonymous_variant 0.51
gyrA 7799 c.498A>G synonymous_variant 0.51
gyrA 7802 c.501C>G synonymous_variant 0.51
gyrA 7832 c.531G>T synonymous_variant 0.54
gyrA 7835 c.534A>G synonymous_variant 0.53
gyrA 7841 c.540C>T synonymous_variant 0.55
gyrA 7847 c.546G>C synonymous_variant 0.49
gyrA 7859 c.558A>C synonymous_variant 0.42
gyrA 7865 c.564T>C synonymous_variant 0.39
gyrA 7886 c.585T>G synonymous_variant 0.29
gyrA 7898 p.Asp199Glu missense_variant 0.2
gyrA 8126 c.825G>C synonymous_variant 0.15
gyrA 8129 c.828T>C synonymous_variant 0.17
gyrA 8156 c.855T>C synonymous_variant 0.24
gyrA 8168 c.867A>G synonymous_variant 0.26
gyrA 8174 c.873C>G synonymous_variant 0.26
gyrA 8177 c.876A>C synonymous_variant 0.25
gyrA 8191 p.Ala297Gly missense_variant 0.2
gyrA 8198 c.897T>C synonymous_variant 0.18
gyrA 8267 c.966G>C synonymous_variant 0.27
gyrA 8283 p.Ile328Leu missense_variant 0.37
gyrA 8288 c.987T>C synonymous_variant 0.4
gyrA 8294 c.993T>C synonymous_variant 0.45
gyrA 8315 c.1014G>A synonymous_variant 0.51
gyrA 8324 c.1023T>C synonymous_variant 0.52
gyrA 8327 c.1026C>G synonymous_variant 0.51
gyrA 8339 c.1038A>G synonymous_variant 0.42
gyrA 8340 p.Ala347Ser missense_variant 0.42
gyrA 8354 c.1053G>C synonymous_variant 0.31
gyrA 8357 c.1056G>A synonymous_variant 0.31
gyrA 8366 c.1065G>C synonymous_variant 0.24
gyrA 8535 p.Glu412Gln missense_variant 0.37
gyrA 8546 p.Asp415Glu missense_variant 0.46
gyrA 8561 c.1260A>C synonymous_variant 0.47
gyrA 8571 c.1270C>T synonymous_variant 0.52
gyrA 8603 c.1302A>C synonymous_variant 0.39
gyrA 8619 c.1318T>C synonymous_variant 0.24
gyrA 8624 c.1323G>C synonymous_variant 0.18
gyrA 8627 c.1326C>G synonymous_variant 0.13
gyrA 8837 c.1536C>G synonymous_variant 0.22
gyrA 8840 c.1539C>T synonymous_variant 0.26
gyrA 8852 c.1551T>C synonymous_variant 0.3
gyrA 8858 c.1557T>G synonymous_variant 0.29
gyrA 8867 c.1566A>G synonymous_variant 0.27
gyrA 8870 c.1569G>C synonymous_variant 0.27
gyrA 8873 c.1572A>G synonymous_variant 0.26
gyrA 8876 c.1575C>T synonymous_variant 0.28
gyrA 8897 c.1596T>C synonymous_variant 0.27
gyrA 8903 c.1602T>C synonymous_variant 0.19
gyrA 9080 c.1779G>T synonymous_variant 0.17
gyrA 9092 c.1791C>G synonymous_variant 0.15
gyrA 9095 c.1794C>T synonymous_variant 0.15
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.15
gyrA 9230 c.1929T>C synonymous_variant 0.16
gyrA 9236 c.1935G>C synonymous_variant 0.16
gyrA 9242 c.1941A>C synonymous_variant 0.16
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9683 c.2382G>T synonymous_variant 0.16
gyrA 9689 c.2388G>T synonymous_variant 0.18
gyrA 9701 c.2400T>C synonymous_variant 0.24
gyrA 9707 c.2406G>C synonymous_variant 0.24
gyrA 9716 c.2415T>C synonymous_variant 0.24
gyrA 9740 p.Leu813Phe missense_variant 0.14
gyrA 9746 c.2445C>T synonymous_variant 0.15
fgd1 491331 c.549G>A synonymous_variant 0.22
fgd1 491355 c.573C>G synonymous_variant 0.24
fgd1 491364 c.582T>C synonymous_variant 0.19
fgd1 491367 c.585G>C synonymous_variant 0.19
fgd1 491370 c.588C>G synonymous_variant 0.2
fgd1 491379 c.597C>G synonymous_variant 0.19
fgd1 491472 c.690A>G synonymous_variant 0.35
fgd1 491490 c.708C>T synonymous_variant 0.42
fgd1 491499 c.717G>C synonymous_variant 0.43
fgd1 491508 c.726A>C synonymous_variant 0.41
fgd1 491512 p.Asn244Glu missense_variant 0.41
fgd1 491536 c.754C>T synonymous_variant 0.44
fgd1 491542 c.760T>C synonymous_variant 0.35
fgd1 491547 c.765A>T synonymous_variant 0.3
fgd1 491548 p.Ala256Pro missense_variant 0.26
fgd1 491562 c.780C>T synonymous_variant 0.22
fgd1 491563 c.781_783delAGCinsTCG synonymous_variant 0.24
fgd1 491571 c.789C>T synonymous_variant 0.51
fgd1 491595 c.813C>T synonymous_variant 0.41
fgd1 491610 c.828A>G synonymous_variant 0.37
fgd1 491616 c.834A>G synonymous_variant 0.39
fgd1 491620 p.Ile280Val missense_variant 0.42
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575689 c.342G>C synonymous_variant 0.22
mshA 575692 c.345G>A synonymous_variant 0.25
mshA 575704 c.357T>C synonymous_variant 0.35
mshA 575705 c.358T>C synonymous_variant 0.35
mshA 575725 c.378C>G synonymous_variant 0.4
mshA 575734 c.387T>G synonymous_variant 0.36
mshA 575744 p.Ala133Thr missense_variant 0.33
mshA 575749 c.402C>A synonymous_variant 0.3
mshA 575764 c.417C>G synonymous_variant 0.22
mshA 575782 c.435G>C synonymous_variant 0.15
mshA 575785 c.438T>C synonymous_variant 0.18
mshA 575795 p.Ile150Val missense_variant 0.31
mshA 575800 c.453G>C synonymous_variant 0.37
mshA 575803 c.456C>T synonymous_variant 0.37
mshA 575821 c.474G>C synonymous_variant 0.45
mshA 575842 c.495G>C synonymous_variant 0.51
mshA 575864 c.517T>C synonymous_variant 0.37
mshA 575869 c.522G>A synonymous_variant 0.32
mshA 575893 c.546C>G synonymous_variant 0.16
mshA 575907 p.Ala187Val missense_variant 1.0
ccsA 620311 p.Leu141Val missense_variant 0.16
ccsA 620316 c.426G>C synonymous_variant 0.22
ccsA 620340 c.450C>G synonymous_variant 0.26
ccsA 620346 c.456C>G synonymous_variant 0.3
ccsA 620358 c.468C>G synonymous_variant 0.35
ccsA 620362 p.Ala158Ser missense_variant 0.32
ccsA 620367 c.477T>C synonymous_variant 0.3
ccsA 620385 c.495G>C synonymous_variant 0.24
ccsA 620388 c.498A>G synonymous_variant 0.22
ccsA 620397 c.507C>G synonymous_variant 0.18
ccsA 620412 c.522T>C synonymous_variant 0.26
ccsA 620415 c.525T>C synonymous_variant 0.26
ccsA 620421 c.531G>C synonymous_variant 0.24
ccsA 620427 c.537C>G synonymous_variant 0.24
ccsA 620439 c.549T>C synonymous_variant 0.24
ccsA 620442 c.552G>C synonymous_variant 0.24
ccsA 620445 c.555A>G synonymous_variant 0.24
ccsA 620454 c.564C>G synonymous_variant 0.23
ccsA 620463 c.573C>G synonymous_variant 0.22
ccsA 620619 c.729G>C synonymous_variant 0.17
ccsA 620625 p.Ile245Met missense_variant 1.0
ccsA 620631 c.741T>C synonymous_variant 0.24
ccsA 620649 c.759A>G synonymous_variant 0.42
ccsA 620652 c.762C>G synonymous_variant 0.41
ccsA 620661 c.771C>G synonymous_variant 0.47
ccsA 620694 c.804C>G synonymous_variant 0.44
ccsA 620698 p.Val270Ile missense_variant 0.47
ccsA 620715 c.825C>T synonymous_variant 0.35
ccsA 620730 c.840C>T synonymous_variant 0.28
ccsA 620733 c.843G>C synonymous_variant 0.29
ccsA 620736 c.846G>C synonymous_variant 0.25
ccsA 620739 c.849A>G synonymous_variant 0.24
ccsA 620742 c.852G>C synonymous_variant 0.24
ccsA 620764 p.Ala292Ser missense_variant 0.21
ccsA 620778 c.888T>C synonymous_variant 0.15
ccsA 620781 c.891C>T synonymous_variant 0.15
ccsA 620783 p.Ala298Val missense_variant 0.16
rpoB 760130 p.Asp108Glu missense_variant 0.18
rpoB 760136 c.330G>A synonymous_variant 0.18
rpoB 760139 c.333A>T synonymous_variant 0.18
rpoB 760142 c.336C>G synonymous_variant 0.23
rpoB 760178 c.372G>A synonymous_variant 0.4
rpoB 760181 c.375T>C synonymous_variant 0.42
rpoB 760184 c.378A>G synonymous_variant 0.44
rpoB 760196 c.390C>G synonymous_variant 0.52
rpoB 760235 c.429T>C synonymous_variant 0.54
rpoB 760244 c.438G>C synonymous_variant 0.52
rpoB 760283 c.477G>C synonymous_variant 0.45
rpoB 760298 c.492G>C synonymous_variant 0.33
rpoB 760310 c.504G>C synonymous_variant 0.29
rpoB 760316 c.510C>G synonymous_variant 0.31
rpoB 760325 c.519G>C synonymous_variant 0.39
rpoB 760331 c.525G>C synonymous_variant 0.31
rpoB 760334 c.528G>T synonymous_variant 0.3
rpoB 760340 c.534G>T synonymous_variant 0.29
rpoB 760357 p.Thr184Ser missense_variant 0.3
rpoB 760361 c.555T>C synonymous_variant 0.32
rpoB 760376 p.Asp190Glu missense_variant 0.43
rpoB 760406 c.600G>C synonymous_variant 0.4
rpoB 760407 p.Ser201Gly missense_variant 0.41
rpoB 760415 c.609C>T synonymous_variant 0.41
rpoB 760424 c.618C>G synonymous_variant 0.45
rpoB 760430 c.624T>C synonymous_variant 0.43
rpoB 760457 c.651C>T synonymous_variant 0.47
rpoB 760463 c.657C>T synonymous_variant 0.47
rpoB 760475 c.669A>G synonymous_variant 0.39
rpoB 760478 c.672C>T synonymous_variant 0.35
rpoB 760481 c.675G>T synonymous_variant 0.37
rpoB 760484 c.678A>G synonymous_variant 0.38
rpoB 760502 c.696C>G synonymous_variant 0.37
rpoB 760522 p.Ser239Asn missense_variant 0.27
rpoB 760532 c.726T>C synonymous_variant 0.22
rpoB 760533 p.Val243Thr missense_variant 0.19
rpoB 760541 c.735G>C synonymous_variant 0.2
rpoB 760547 c.741G>C synonymous_variant 0.2
rpoB 760585 p.Asn260Ser missense_variant 0.16
rpoB 760591 p.Val262Ala missense_variant 0.15
rpoB 760595 c.789C>T synonymous_variant 0.16
rpoB 760596 p.Thr264Pro missense_variant 0.18
rpoB 760611 c.805T>C synonymous_variant 0.35
rpoB 760646 c.840C>G synonymous_variant 0.48
rpoB 760655 c.849A>G synonymous_variant 0.52
rpoB 760661 c.855A>C synonymous_variant 0.53
rpoB 760670 c.864G>C synonymous_variant 0.51
rpoB 760674 c.868T>C synonymous_variant 0.49
rpoB 760679 c.873A>G synonymous_variant 0.49
rpoB 760683 c.877T>C synonymous_variant 0.49
rpoB 760721 c.915C>G synonymous_variant 0.28
rpoB 760724 c.918T>C synonymous_variant 0.25
rpoB 760730 c.924T>C synonymous_variant 0.22
rpoB 760748 c.942C>G synonymous_variant 0.18
rpoB 760793 c.987A>G synonymous_variant 0.21
rpoB 760805 c.999G>C synonymous_variant 0.17
rpoB 760817 c.1011A>G synonymous_variant 0.19
rpoB 760820 c.1014T>C synonymous_variant 0.19
rpoB 760826 c.1020C>G synonymous_variant 0.2
rpoB 760830 c.1024T>C synonymous_variant 0.2
rpoB 760841 c.1035T>C synonymous_variant 0.21
rpoB 760859 c.1053T>C synonymous_variant 0.2
rpoB 760862 c.1056G>C synonymous_variant 0.2
rpoB 760877 c.1071G>C synonymous_variant 0.17
rpoB 760883 c.1077G>C synonymous_variant 0.17
rpoB 760886 c.1080A>G synonymous_variant 0.18
rpoB 760887 p.Thr361Val missense_variant 0.17
rpoB 760910 c.1104C>T synonymous_variant 0.34
rpoB 760916 c.1110C>T synonymous_variant 0.3
rpoB 760919 c.1113C>T synonymous_variant 0.27
rpoB 760925 c.1119T>C synonymous_variant 0.23
rpoB 760928 c.1122G>C synonymous_variant 0.21
rpoB 760931 c.1125C>G synonymous_variant 0.22
rpoB 760946 c.1140A>G synonymous_variant 0.18
rpoB 760958 c.1152G>C synonymous_variant 0.26
rpoB 761015 c.1209G>C synonymous_variant 0.27
rpoB 761027 c.1221A>C synonymous_variant 0.26
rpoB 761036 c.1230G>C synonymous_variant 0.26
rpoB 761037 c.1231T>C synonymous_variant 0.27
rpoB 761051 c.1245G>T synonymous_variant 0.26
rpoB 761054 c.1248G>C synonymous_variant 0.24
rpoB 761057 c.1251G>C synonymous_variant 0.25
rpoB 761060 c.1254C>G synonymous_variant 0.25
rpoB 761063 c.1257C>G synonymous_variant 0.26
rpoB 761102 c.1296A>G synonymous_variant 0.14
rpoB 761111 c.1305C>T synonymous_variant 0.26
rpoB 761132 c.1326G>T synonymous_variant 0.37
rpoB 761133 c.1327T>C synonymous_variant 0.36
rpoB 761147 c.1341C>T synonymous_variant 0.44
rpoB 761150 c.1344A>T synonymous_variant 0.43
rpoB 761165 c.1359G>C synonymous_variant 0.43
rpoB 761180 c.1374A>C synonymous_variant 0.38
rpoB 761189 c.1383T>C synonymous_variant 0.32
rpoB 761195 c.1389G>C synonymous_variant 0.3
rpoB 761198 c.1392G>T synonymous_variant 0.31
rpoB 761213 c.1407G>C synonymous_variant 0.22
rpoB 761217 p.Pro471Ser missense_variant 0.21
rpoB 761234 c.1428G>C synonymous_variant 0.24
rpoB 761249 c.1443A>G synonymous_variant 0.29
rpoB 761261 c.1455G>T synonymous_variant 0.37
rpoB 761264 c.1458C>G synonymous_variant 0.39
rpoB 761282 c.1476C>T synonymous_variant 0.48
rpoB 761288 c.1482G>T synonymous_variant 0.49
rpoB 761318 c.1512G>T synonymous_variant 0.53
rpoB 761327 c.1521A>G synonymous_variant 0.53
rpoB 761330 c.1524G>C synonymous_variant 0.51
rpoB 761345 c.1539G>C synonymous_variant 0.51
rpoB 761354 c.1548C>T synonymous_variant 0.47
rpoB 761360 c.1554T>C synonymous_variant 0.43
rpoB 761362 p.Ser519Thr missense_variant 0.44
rpoB 761367 p.Glu521Gln missense_variant 0.44
rpoB 761374 p.Val523Asp missense_variant 0.41
rpoB 761408 c.1602G>C synonymous_variant 0.3
rpoB 761414 c.1608A>G synonymous_variant 0.28
rpoB 761423 c.1617T>C synonymous_variant 0.17
rpoB 761537 c.1731C>G synonymous_variant 0.28
rpoB 761552 c.1746G>C synonymous_variant 0.31
rpoB 761555 c.1749G>C synonymous_variant 0.31
rpoB 761558 c.1752C>G synonymous_variant 0.32
rpoB 761570 c.1764T>C synonymous_variant 0.37
rpoB 761573 c.1767C>G synonymous_variant 0.39
rpoB 761579 c.1773G>C synonymous_variant 0.42
rpoB 761600 c.1794T>C synonymous_variant 0.48
rpoB 761606 c.1800C>G synonymous_variant 0.46
rpoB 761612 c.1806G>T synonymous_variant 0.43
rpoB 761615 c.1809A>C synonymous_variant 0.45
rpoB 761636 c.1830G>T synonymous_variant 0.5
rpoB 761645 c.1839C>G synonymous_variant 0.48
rpoB 761648 c.1842T>C synonymous_variant 0.48
rpoB 761666 c.1860G>C synonymous_variant 0.45
rpoB 761669 c.1863C>T synonymous_variant 0.41
rpoB 761675 c.1869G>T synonymous_variant 0.38
rpoB 761690 c.1884G>C synonymous_variant 0.24
rpoB 761747 c.1941G>C synonymous_variant 0.23
rpoB 761765 c.1959T>C synonymous_variant 0.38
rpoB 761772 p.His656Ala missense_variant 0.41
rpoB 761778 p.Asn658Asp missense_variant 0.47
rpoB 761785 p.Thr660Ser missense_variant 0.44
rpoB 761791 p.Arg662His missense_variant 0.46
rpoB 761813 c.2007T>C synonymous_variant 0.47
rpoB 761834 c.2028T>C synonymous_variant 0.22
rpoB 761921 c.2115C>T synonymous_variant 0.2
rpoB 761930 c.2124G>C synonymous_variant 0.3
rpoB 761948 c.2142G>C synonymous_variant 0.43
rpoB 761954 c.2148C>G synonymous_variant 0.45
rpoB 762008 c.2202C>T synonymous_variant 0.54
rpoB 762014 c.2208C>T synonymous_variant 0.51
rpoB 762047 c.2241G>A synonymous_variant 0.45
rpoB 762053 c.2247T>C synonymous_variant 0.43
rpoB 762062 c.2256T>C synonymous_variant 0.37
rpoB 762065 c.2259T>C synonymous_variant 0.36
rpoB 762083 c.2277T>C synonymous_variant 0.29
rpoB 762086 c.2280G>C synonymous_variant 0.29
rpoB 762101 c.2295C>G synonymous_variant 0.28
rpoB 762114 p.Ile770Val missense_variant 0.24
rpoB 762131 c.2325C>G synonymous_variant 0.32
rpoB 762137 c.2331C>T synonymous_variant 0.33
rpoB 762140 c.2334G>C synonymous_variant 0.38
rpoB 762143 c.2337T>C synonymous_variant 0.38
rpoB 762149 c.2343G>C synonymous_variant 0.42
rpoB 762158 c.2352G>C synonymous_variant 0.5
rpoB 762167 c.2361T>C synonymous_variant 0.49
rpoB 762176 c.2370T>C synonymous_variant 0.56
rpoB 762185 c.2379G>C synonymous_variant 0.58
rpoB 762233 c.2427G>C synonymous_variant 0.55
rpoB 762245 c.2439G>C synonymous_variant 0.53
rpoB 762284 c.2478G>T synonymous_variant 0.45
rpoB 762287 c.2481C>T synonymous_variant 0.44
rpoB 762293 c.2487T>C synonymous_variant 0.44
rpoB 762308 c.2502G>C synonymous_variant 0.37
rpoB 762317 c.2511A>G synonymous_variant 0.35
rpoB 762329 c.2523G>C synonymous_variant 0.35
rpoB 762338 c.2532T>C synonymous_variant 0.33
rpoB 762341 c.2535G>C synonymous_variant 0.3
rpoB 762347 c.2541T>C synonymous_variant 0.31
rpoB 762350 c.2544C>T synonymous_variant 0.33
rpoB 762362 p.Glu852Asp missense_variant 0.45
rpoB 762369 c.2563T>C synonymous_variant 0.49
rpoC 762374 c.-996G>C upstream_gene_variant 0.5
rpoC 762395 c.-975G>C upstream_gene_variant 0.43
rpoC 762398 c.-972T>C upstream_gene_variant 0.41
rpoC 762401 c.-969G>C upstream_gene_variant 0.41
rpoC 762404 c.-966T>C upstream_gene_variant 0.41
rpoC 762410 c.-960T>C upstream_gene_variant 0.41
rpoC 762416 c.-954A>G upstream_gene_variant 0.45
rpoC 762434 c.-936T>C upstream_gene_variant 0.42
rpoC 762443 c.-927G>C upstream_gene_variant 0.37
rpoC 762449 c.-921C>A upstream_gene_variant 0.37
rpoC 762452 c.-918G>C upstream_gene_variant 0.41
rpoC 762470 c.-900G>C upstream_gene_variant 0.53
rpoC 762491 c.-879T>C upstream_gene_variant 0.48
rpoC 762509 c.-861T>G upstream_gene_variant 0.41
rpoB 762510 p.Ala902Pro missense_variant 0.41
rpoC 762515 c.-855C>T upstream_gene_variant 0.4
rpoC 762533 c.-837T>C upstream_gene_variant 0.24
rpoC 762536 c.-834T>C upstream_gene_variant 0.17
rpoC 762537 c.-833T>C upstream_gene_variant 0.17
rpoC 762839 c.-531G>A upstream_gene_variant 0.15
rpoC 762857 c.-513C>G upstream_gene_variant 0.2
rpoC 762863 c.-507T>C upstream_gene_variant 0.24
rpoB 762879 p.Met1025Leu missense_variant 0.31
rpoC 762920 c.-450C>T upstream_gene_variant 0.41
rpoC 762929 c.-441G>C upstream_gene_variant 0.42
rpoC 762959 c.-411G>C upstream_gene_variant 0.51
rpoC 762962 c.-408C>T upstream_gene_variant 0.48
rpoC 762995 c.-375G>T upstream_gene_variant 0.56
rpoC 763004 c.-366G>A upstream_gene_variant 0.54
rpoC 763007 c.-363C>T upstream_gene_variant 0.55
rpoC 763028 c.-342T>C upstream_gene_variant 0.55
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 0.45
rpoC 763070 c.-300T>C upstream_gene_variant 0.39
rpoC 763085 c.-285C>G upstream_gene_variant 0.33
rpoC 763103 c.-267G>C upstream_gene_variant 0.19
rpoC 763115 c.-255T>C upstream_gene_variant 0.24
rpoC 763127 c.-243G>C upstream_gene_variant 0.34
rpoC 763130 c.-240G>A upstream_gene_variant 0.33
rpoC 763133 c.-237G>C upstream_gene_variant 0.34
rpoC 763136 c.-234C>T upstream_gene_variant 0.36
rpoC 763142 c.-228C>G upstream_gene_variant 0.37
rpoC 763160 c.-210G>T upstream_gene_variant 0.27
rpoC 763166 c.-204A>G upstream_gene_variant 0.25
rpoC 763169 c.-201A>G upstream_gene_variant 0.25
rpoC 763190 c.-180C>T upstream_gene_variant 0.13
rpoC 763408 c.39T>C synonymous_variant 0.18
rpoC 763411 c.42T>C synonymous_variant 0.2
rpoC 763414 c.45T>C synonymous_variant 0.19
rpoC 763423 p.Glu18Asp missense_variant 0.16
rpoC 763443 p.Tyr25Phe missense_variant 0.13
rpoC 763456 c.87A>G synonymous_variant 0.18
rpoC 763468 c.99G>C synonymous_variant 0.25
rpoC 763486 c.117T>C synonymous_variant 0.37
rpoC 763492 c.123G>T synonymous_variant 0.41
rpoC 763528 c.159G>A synonymous_variant 0.63
rpoC 763546 c.177A>G synonymous_variant 0.54
rpoC 763558 c.189C>T synonymous_variant 0.57
rpoC 763570 c.201G>C synonymous_variant 0.49
rpoC 763573 c.204G>C synonymous_variant 0.45
rpoC 763588 c.219C>T synonymous_variant 0.35
rpoC 763594 c.225C>T synonymous_variant 0.37
rpoC 763603 c.234C>T synonymous_variant 0.34
rpoC 763615 c.246G>C synonymous_variant 0.43
rpoC 763618 c.249C>T synonymous_variant 0.45
rpoC 763633 c.264T>C synonymous_variant 0.49
rpoC 763660 c.291T>G synonymous_variant 0.51
rpoC 763666 c.297G>A synonymous_variant 0.53
rpoC 763675 c.306C>G synonymous_variant 0.54
rpoC 763702 c.333C>G synonymous_variant 0.48
rpoC 763709 c.340C>T synonymous_variant 0.46
rpoC 763714 c.345G>C synonymous_variant 0.47
rpoC 763717 c.348T>C synonymous_variant 0.45
rpoC 763723 c.354G>C synonymous_variant 0.43
rpoC 763732 c.363C>T synonymous_variant 0.45
rpoC 763741 c.372C>T synonymous_variant 0.45
rpoC 763747 c.378G>A synonymous_variant 0.46
rpoC 763765 c.396T>G synonymous_variant 0.48
rpoC 763792 p.Glu141Asp missense_variant 0.48
rpoC 763807 c.438T>C synonymous_variant 0.39
rpoC 763813 c.444C>G synonymous_variant 0.36
rpoC 763831 c.462A>G synonymous_variant 0.32
rpoC 763837 c.468G>C synonymous_variant 0.25
rpoC 763840 c.471G>C synonymous_variant 0.19
rpoC 763858 c.489A>G synonymous_variant 0.18
rpoC 763861 c.492C>T synonymous_variant 0.17
rpoC 763872 p.Gly168Ala missense_variant 0.2
rpoC 763876 p.Glu169Asp missense_variant 0.2
rpoC 763879 c.510A>G synonymous_variant 0.2
rpoC 763882 c.513G>A synonymous_variant 0.23
rpoC 763891 c.522G>C synonymous_variant 0.27
rpoC 763894 c.525A>G synonymous_variant 0.32
rpoC 763900 c.531G>C synonymous_variant 0.37
rpoC 763921 c.552G>C synonymous_variant 0.38
rpoC 763924 c.555G>A synonymous_variant 0.34
rpoC 763930 c.561G>A synonymous_variant 0.32
rpoC 763933 c.564C>T synonymous_variant 0.33
rpoC 763940 p.Ala191Ser missense_variant 0.33
rpoC 763945 c.576T>C synonymous_variant 0.3
rpoC 763947 p.Ala193Val missense_variant 0.31
rpoC 763951 c.582G>C synonymous_variant 0.33
rpoC 763960 c.591T>G synonymous_variant 0.31
rpoC 763969 c.600C>T synonymous_variant 0.22
rpoC 764005 c.636G>C synonymous_variant 0.19
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.3
rpoC 764029 p.Glu220Asp missense_variant 0.29
rpoC 764032 p.Asp221Glu missense_variant 0.29
rpoC 764040 p.Ser224Thr missense_variant 0.29
rpoC 764044 c.675T>C synonymous_variant 0.29
rpoC 764059 c.690G>T synonymous_variant 0.24
rpoC 764071 c.702G>C synonymous_variant 0.17
rpoC 764153 p.Gln262Lys missense_variant 0.39
rpoC 764161 c.792G>C synonymous_variant 0.37
rpoC 764182 p.Asp271Glu missense_variant 0.33
rpoC 764188 c.819A>G synonymous_variant 0.22
rpoC 764239 c.870T>G synonymous_variant 0.34
rpoC 764254 c.885G>C synonymous_variant 0.45
rpoC 764257 c.888G>C synonymous_variant 0.46
rpoC 764263 c.894G>C synonymous_variant 0.48
rpoC 764266 c.897T>C synonymous_variant 0.5
rpoC 764272 c.903G>C synonymous_variant 0.54
rpoC 764278 c.909A>G synonymous_variant 0.56
rpoC 764293 c.924G>C synonymous_variant 0.59
rpoC 764297 p.Met310Leu missense_variant 0.59
rpoC 764344 c.975C>T synonymous_variant 0.58
rpoC 764353 c.984G>T synonymous_variant 0.62
rpoC 764365 c.996C>T synonymous_variant 0.63
rpoC 764371 c.1002G>C synonymous_variant 0.58
rpoC 764380 c.1011G>C synonymous_variant 0.58
rpoC 764387 c.1018T>C synonymous_variant 0.56
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.43
rpoC 764431 c.1062G>C synonymous_variant 0.51
rpoC 764434 c.1065A>G synonymous_variant 0.47
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.47
rpoC 764446 c.1077T>C synonymous_variant 0.58
rpoC 764449 c.1080G>C synonymous_variant 0.57
rpoC 764458 c.1089G>C synonymous_variant 0.62
rpoC 764461 c.1092A>G synonymous_variant 0.62
rpoC 764485 c.1116G>C synonymous_variant 0.57
rpoC 764491 c.1122G>T synonymous_variant 0.56
rpoC 764497 c.1128A>G synonymous_variant 0.53
rpoC 764500 c.1131C>G synonymous_variant 0.55
rpoC 764512 c.1143G>T synonymous_variant 0.6
rpoC 764521 c.1152T>C synonymous_variant 0.6
rpoC 764527 c.1158C>T synonymous_variant 0.6
rpoC 764536 c.1167G>T synonymous_variant 0.62
rpoC 764539 c.1170C>G synonymous_variant 0.64
rpoC 764575 c.1206T>G synonymous_variant 0.72
rpoC 764605 c.1236G>C synonymous_variant 0.63
rpoC 764611 c.1242G>T synonymous_variant 0.61
rpoC 764623 c.1254C>G synonymous_variant 0.55
rpoC 764626 c.1257C>T synonymous_variant 0.56
rpoC 764632 c.1263T>C synonymous_variant 0.55
rpoC 764650 c.1281G>T synonymous_variant 0.54
rpoC 764701 c.1332C>G synonymous_variant 0.54
rpoC 764713 c.1344G>T synonymous_variant 0.55
rpoC 764716 c.1347G>C synonymous_variant 0.56
rpoC 764746 c.1377G>T synonymous_variant 0.54
rpoC 764752 c.1383G>C synonymous_variant 0.56
rpoC 764758 c.1389C>G synonymous_variant 0.57
rpoC 764764 c.1395T>C synonymous_variant 0.6
rpoC 764803 c.1434C>T synonymous_variant 0.56
rpoC 764809 c.1440C>T synonymous_variant 0.56
rpoC 764815 c.1446A>G synonymous_variant 0.57
rpoC 764824 c.1455T>C synonymous_variant 0.5
rpoC 764827 c.1458G>C synonymous_variant 0.5
rpoC 764840 p.Ile491Val missense_variant 0.54
rpoC 764858 c.1489T>C synonymous_variant 0.48
rpoC 764869 c.1500C>T synonymous_variant 0.48
rpoC 764875 c.1506C>T synonymous_variant 0.48
rpoC 764878 c.1509C>G synonymous_variant 0.45
rpoC 764887 c.1518G>C synonymous_variant 0.43
rpoC 764888 c.1519T>C synonymous_variant 0.44
rpoC 764911 c.1542A>G synonymous_variant 0.46
rpoC 764912 p.Met515Gln missense_variant 0.46
rpoC 764935 c.1566T>C synonymous_variant 0.57
rpoC 764948 c.1579T>C synonymous_variant 0.55
rpoC 764968 c.1599T>C synonymous_variant 0.47
rpoC 765338 p.Gln657Lys missense_variant 0.14
rpoC 765357 p.Met663Thr missense_variant 0.15
rpoC 765361 c.1992C>G synonymous_variant 0.21
rpoC 765383 p.Met672Leu missense_variant 0.32
rpoC 765403 c.2034G>C synonymous_variant 0.3
rpoC 765404 p.Leu679Lys missense_variant 0.31
rpoC 765409 c.2040T>C synonymous_variant 0.32
rpoC 765412 c.2043T>C synonymous_variant 0.32
rpoC 765425 p.Lys686Glu missense_variant 0.37
rpoC 765445 c.2076G>C synonymous_variant 0.25
rpoC 765452 p.Ala695Arg missense_variant 0.18
rpoC 765466 c.2097C>T synonymous_variant 0.28
rpoC 765478 c.2109T>C synonymous_variant 0.33
rpoC 765480 p.Tyr704Phe missense_variant 0.34
rpoC 765496 c.2127C>G synonymous_variant 0.31
rpoC 765499 c.2130C>G synonymous_variant 0.29
rpoC 765529 c.2160C>T synonymous_variant 0.24
rpoC 765533 p.Tyr722His missense_variant 0.19
rpoC 765811 c.2442T>G synonymous_variant 0.21
rpoC 765814 c.2445A>C synonymous_variant 0.22
rpoC 765817 c.2448G>C synonymous_variant 0.24
rpoC 765823 c.2454C>A synonymous_variant 0.28
rpoC 765826 c.2457T>C synonymous_variant 0.3
rpoC 765835 c.2466C>T synonymous_variant 0.34
rpoC 765871 c.2502T>C synonymous_variant 0.39
rpoC 765875 p.Val836Ile missense_variant 0.41
rpoC 765886 c.2517C>G synonymous_variant 0.38
rpoC 765904 c.2535C>G synonymous_variant 0.32
rpoC 765908 c.2539C>T synonymous_variant 0.33
rpoC 765934 c.2565C>T synonymous_variant 0.27
rpoC 765940 c.2571A>T synonymous_variant 0.22
rpoC 765946 c.2577C>T synonymous_variant 0.15
rpoC 765952 c.2583G>C synonymous_variant 0.16
rpoC 765961 c.2592G>T synonymous_variant 0.15
rpoC 765967 c.2598C>T synonymous_variant 0.15
rpoC 766309 c.2940G>C synonymous_variant 0.23
rpoC 766315 c.2946C>G synonymous_variant 0.27
rpoC 766345 c.2976T>C synonymous_variant 0.44
rpoC 766348 c.2979A>G synonymous_variant 0.42
rpoC 766363 c.2994G>C synonymous_variant 0.41
rpoC 766381 c.3012C>T synonymous_variant 0.35
rpoC 766384 c.3015A>G synonymous_variant 0.33
rpoC 766390 c.3021C>T synonymous_variant 0.31
rpoC 766714 c.3345G>C synonymous_variant 0.22
rpoC 766717 c.3348C>G synonymous_variant 0.22
rpoC 766720 c.3351C>T synonymous_variant 0.26
rpoC 766726 c.3357T>C synonymous_variant 0.33
rpoC 766738 c.3369G>T synonymous_variant 0.44
rpoC 766741 c.3372G>C synonymous_variant 0.45
rpoC 766765 c.3396A>C synonymous_variant 0.46
rpoC 766771 c.3402G>C synonymous_variant 0.39
rpoC 766774 c.3405T>C synonymous_variant 0.38
rpoC 766775 p.Arg1136Lys missense_variant 0.36
rpoC 766798 c.3429C>G synonymous_variant 0.42
rpoC 766804 c.3435A>G synonymous_variant 0.38
rpoC 766807 c.3438T>C synonymous_variant 0.36
rpoC 766837 c.3468G>C synonymous_variant 0.26
rpoC 766843 c.3474T>C synonymous_variant 0.23
rpoC 766846 c.3477C>G synonymous_variant 0.25
rpoC 766963 c.3594T>C synonymous_variant 0.2
rpoC 766981 c.3612T>C synonymous_variant 0.28
rpoC 766996 c.3627C>T synonymous_variant 0.35
rpoC 767002 c.3633G>C synonymous_variant 0.41
rpoC 767008 c.3639G>A synonymous_variant 0.45
rpoC 767020 c.3651C>G synonymous_variant 0.47
rpoC 767098 c.3729T>C synonymous_variant 0.47
rpoC 767104 c.3735C>G synonymous_variant 0.42
rpoC 767105 p.Asn1246Gln missense_variant 0.41
rpoC 767119 c.3750A>G synonymous_variant 0.49
rpoC 767134 c.3765C>T synonymous_variant 0.47
rpoC 767138 c.3769C>T synonymous_variant 0.43
rpoC 767158 c.3789T>C synonymous_variant 0.37
rpoC 767162 p.Asn1265Ala missense_variant 0.26
rpoC 767167 c.3798C>T synonymous_variant 0.3
rpoC 767174 p.Asn1269Asp missense_variant 0.32
rpoC 767180 p.Ala1271Gln missense_variant 0.3
rpoC 767191 c.3822C>G synonymous_variant 0.42
rpoC 767197 c.3828G>A synonymous_variant 0.41
rpoC 767221 c.3852C>G synonymous_variant 0.45
rpoC 767230 c.3861G>C synonymous_variant 0.43
rpoC 767233 c.3864T>C synonymous_variant 0.41
rpoC 767263 c.3894T>C synonymous_variant 0.37
rpoC 767264 p.Ala1299Gln missense_variant 0.36
rpoC 767278 c.3909T>C synonymous_variant 0.33
rpoC 767281 c.3912C>G synonymous_variant 0.27
rpoC 767284 c.3915C>G synonymous_variant 0.27
rpoC 767296 c.3927C>T synonymous_variant 0.24
rpoC 767302 c.3933C>A synonymous_variant 0.21
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775814 c.2667C>G synonymous_variant 0.18
mmpL5 775817 c.2664T>C synonymous_variant 0.2
mmpL5 775829 c.2652C>G synonymous_variant 0.27
mmpL5 775832 c.2649C>G synonymous_variant 0.24
mmpL5 775835 c.2646C>G synonymous_variant 0.24
mmpL5 775847 c.2634G>A synonymous_variant 0.25
mmpL5 775856 c.2625T>C synonymous_variant 0.29
mmpL5 775862 c.2619G>C synonymous_variant 0.26
mmpL5 775865 c.2616T>G synonymous_variant 0.26
mmpL5 775904 c.2577G>A synonymous_variant 0.25
mmpL5 775909 p.Leu858Phe missense_variant 0.25
mmpL5 775915 p.Ala856Ser missense_variant 0.3
mmpL5 775916 c.2565T>C synonymous_variant 0.3
mmpL5 775921 c.2560C>T synonymous_variant 0.2
mmpL5 775924 c.2557C>T synonymous_variant 0.22
mmpL5 775951 c.2530C>T synonymous_variant 0.32
mmpL5 775966 p.Ala839Ser missense_variant 0.33
mmpL5 775970 c.2511G>C synonymous_variant 0.22
mmpL5 775975 c.2506T>C synonymous_variant 0.17
mmpL5 775981 p.Leu834Met missense_variant 0.26
mmpL5 776030 c.2451G>C synonymous_variant 0.25
mmpL5 776045 c.2436G>C synonymous_variant 0.29
mmpL5 776053 c.2428T>C synonymous_variant 0.31
mmpL5 776075 c.2406C>G synonymous_variant 0.29
mmpL5 776081 c.2400G>C synonymous_variant 0.36
mmpL5 776084 c.2397C>G synonymous_variant 0.36
mmpL5 776087 c.2394C>G synonymous_variant 0.35
mmpL5 776099 p.Thr794Ile missense_variant 0.15
mmpL5 776120 c.2361C>T synonymous_variant 0.25
mmpL5 776182 p.Asp767Asn missense_variant 0.89
mmpL5 776207 c.2274G>C synonymous_variant 0.18
mmpL5 776217 p.Ala755Lys missense_variant 0.19
mmpL5 776222 c.2259A>C synonymous_variant 0.19
mmpL5 776230 c.2251T>C synonymous_variant 0.19
mmpL5 776234 c.2247A>C synonymous_variant 0.18
mmpL5 776660 c.1821C>T synonymous_variant 0.24
mmpL5 776681 p.Leu600Ile missense_variant 0.23
mmpL5 776693 p.Val596Met missense_variant 0.24
mmpL5 776704 p.Asp593Asn missense_variant 0.35
mmpL5 776706 p.Tyr592Phe missense_variant 0.15
mmpL5 776715 p.Lys589Pro missense_variant 0.37
mmpL5 776733 p.Ser583Asn missense_variant 0.23
mmpL5 776741 c.1740C>G synonymous_variant 0.22
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781595 c.36T>C synonymous_variant 0.15
rpsL 781598 c.39G>C synonymous_variant 0.16
rpsL 781605 p.Ile16Val missense_variant 0.14
rpsL 781608 p.Ser17Ala missense_variant 0.15
rpsL 781628 c.69T>C synonymous_variant 0.3
rpsL 781631 c.72G>C synonymous_variant 0.3
rpsL 781649 c.90T>C synonymous_variant 0.43
rpsL 781655 c.96T>C synonymous_variant 0.44
rpsL 781658 c.99A>G synonymous_variant 0.46
rpsL 781682 c.123T>C synonymous_variant 0.46
rpsL 781709 c.150G>C synonymous_variant 0.24
rpsL 781715 c.156T>C synonymous_variant 0.23
rpsL 781772 c.213C>T synonymous_variant 0.21
rpsL 781808 c.249C>T synonymous_variant 0.27
rpsL 781814 c.255C>T synonymous_variant 0.26
rpsL 781817 c.258G>T synonymous_variant 0.3
rpsL 781829 c.270G>C synonymous_variant 0.3
rpsL 781832 c.273T>C synonymous_variant 0.31
rpsL 781838 c.279G>C synonymous_variant 0.32
rpsL 781841 c.282C>T synonymous_variant 0.29
rpsL 781859 c.300T>G synonymous_variant 0.36
rpsL 781865 c.306G>C synonymous_variant 0.36
rpsL 781868 c.309T>C synonymous_variant 0.36
rpsL 781871 c.312G>C synonymous_variant 0.36
rpsL 781892 c.333A>G synonymous_variant 0.33
rpsL 781898 c.339A>C synonymous_variant 0.34
rpsL 781901 c.342C>T synonymous_variant 0.32
rpsL 781907 c.348T>C synonymous_variant 0.34
rpsL 781916 c.357T>C synonymous_variant 0.33
rpsL 781929 p.Gly124Ser missense_variant 0.36
rplC 800612 c.-197A>G upstream_gene_variant 0.14
rplC 800645 c.-164C>G upstream_gene_variant 0.22
rplC 800648 c.-161A>G upstream_gene_variant 0.23
rplC 800654 c.-155T>C upstream_gene_variant 0.24
rplC 800678 c.-131C>T upstream_gene_variant 0.28
rplC 800684 c.-125G>A upstream_gene_variant 0.32
rplC 800693 c.-116A>C upstream_gene_variant 0.39
rplC 800702 c.-107G>A upstream_gene_variant 0.38
rplC 800703 c.-106T>C upstream_gene_variant 0.39
rplC 800715 c.-94A>C upstream_gene_variant 0.4
rplC 800720 c.-89T>C upstream_gene_variant 0.42
rplC 800723 c.-86C>G upstream_gene_variant 0.45
rplC 800735 c.-74C>G upstream_gene_variant 0.46
rplC 800762 c.-47T>G upstream_gene_variant 0.4
rplC 800771 c.-38C>T upstream_gene_variant 0.35
rplC 800931 c.123G>C synonymous_variant 0.16
rplC 800937 c.129A>G synonymous_variant 0.2
rplC 800946 c.138T>C synonymous_variant 0.2
rplC 800949 c.141T>C synonymous_variant 0.2
rplC 800964 c.156G>C synonymous_variant 0.23
rplC 800985 c.177A>G synonymous_variant 0.26
rplC 801237 c.429G>A synonymous_variant 0.15
rplC 801264 c.456C>T synonymous_variant 0.13
rplC 801276 c.468G>C synonymous_variant 0.15
rplC 801281 p.Ala158Gly missense_variant 0.15
rplC 801285 c.477G>C synonymous_variant 0.16
fbiC 1303638 c.708A>G synonymous_variant 0.21
fbiC 1303659 c.729T>C synonymous_variant 0.23
fbiC 1303660 p.Val244Thr missense_variant 0.23
fbiC 1303666 p.Thr246Asp missense_variant 0.23
fbiC 1303681 c.751T>C synonymous_variant 0.26
fbiC 1303689 c.759T>C synonymous_variant 0.23
fbiC 1303695 c.765T>C synonymous_variant 0.24
fbiC 1303704 c.774T>C synonymous_variant 0.19
fbiC 1303708 c.778T>C synonymous_variant 0.19
fbiC 1304490 c.1560C>A synonymous_variant 0.14
fbiC 1304499 c.1569T>G synonymous_variant 0.18
fbiC 1304508 p.Glu526Asp missense_variant 0.19
fbiC 1304520 c.1590A>C synonymous_variant 0.27
fbiC 1304526 c.1596T>G synonymous_variant 0.34
fbiC 1304533 c.1603T>C synonymous_variant 0.39
fbiC 1304559 p.Glu543Asp missense_variant 0.45
fbiC 1304562 c.1632G>C synonymous_variant 0.42
fbiC 1304567 p.Phe546Tyr missense_variant 0.42
fbiC 1304571 c.1641G>C synonymous_variant 0.44
fbiC 1304580 c.1650T>C synonymous_variant 0.47
fbiC 1304613 c.1683T>C synonymous_variant 0.39
fbiC 1304628 c.1698G>T synonymous_variant 0.28
fbiC 1304634 c.1704C>G synonymous_variant 0.28
fbiC 1304640 c.1710A>C synonymous_variant 0.3
fbiC 1304646 c.1716T>C synonymous_variant 0.26
fbiC 1304757 c.1827A>T synonymous_variant 0.18
fbiC 1304760 c.1830G>C synonymous_variant 0.17
fbiC 1304769 c.1839C>T synonymous_variant 0.17
fbiC 1304784 c.1854T>G synonymous_variant 0.36
fbiC 1304787 c.1857T>G synonymous_variant 0.37
fbiC 1304799 c.1869G>C synonymous_variant 0.36
fbiC 1304802 c.1872G>C synonymous_variant 0.36
fbiC 1304811 c.1881C>G synonymous_variant 0.34
fbiC 1304817 c.1887T>C synonymous_variant 0.31
fbiC 1304829 c.1899T>C synonymous_variant 0.28
fbiC 1304832 c.1902C>G synonymous_variant 0.29
fbiC 1304835 c.1905G>C synonymous_variant 0.31
fbiC 1305348 c.2418C>T synonymous_variant 0.16
fbiC 1305351 c.2421G>C synonymous_variant 0.18
fbiC 1305361 c.2431C>T synonymous_variant 0.18
fbiC 1305381 c.2451G>C synonymous_variant 0.22
fbiC 1305399 c.2469A>G synonymous_variant 0.2
fbiC 1305400 p.His824Asn missense_variant 0.2
fbiC 1305405 c.2475A>G synonymous_variant 0.21
fbiC 1305414 c.2484G>A synonymous_variant 0.16
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
atpE 1461197 c.153A>C synonymous_variant 0.18
atpE 1461219 c.175T>C synonymous_variant 0.18
atpE 1461224 c.180T>G synonymous_variant 0.18
atpE 1461227 c.183G>A synonymous_variant 0.16
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.38
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.37
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.41
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.41
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.49
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.27
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.22
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.2
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.34
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.44
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.61
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.62
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.73
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.16
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.2
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.23
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.28
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.18
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.18
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.19
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.18
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.42
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.35
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.47
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.14
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.59
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.58
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.54
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.19
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.22
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.37
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.37
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.39
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.34
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.27
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.22
rrs 1472846 n.1001C>A non_coding_transcript_exon_variant 0.21
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.21
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.21
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.23
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.23
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.23
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.21
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.22
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.16
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.68
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.55
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.56
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.55
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.58
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.54
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.53
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.52
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.26
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.46
rrl 1473697 n.40C>T non_coding_transcript_exon_variant 0.48
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.49
rrl 1473717 n.60G>T non_coding_transcript_exon_variant 0.6
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.54
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.5
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.41
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.19
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.33
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.33
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.37
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.31
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 0.21
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.2
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.18
rrl 1473935 n.278C>T non_coding_transcript_exon_variant 0.15
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.15
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.16
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.15
rrl 1474022 n.365G>A non_coding_transcript_exon_variant 0.23
rrl 1474044 n.387C>T non_coding_transcript_exon_variant 0.31
rrl 1474045 n.388C>T non_coding_transcript_exon_variant 0.27
rrl 1474053 n.396G>A non_coding_transcript_exon_variant 0.26
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.26
rrl 1474083 n.426C>T non_coding_transcript_exon_variant 0.25
rrl 1474091 n.434C>T non_coding_transcript_exon_variant 0.13
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.31
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.37
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.45
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.51
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.5
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.53
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.56
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.54
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.57
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.45
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.47
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.42
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 0.32
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.39
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.32
rrl 1474629 n.972G>A non_coding_transcript_exon_variant 0.33
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.31
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.3
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.3
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.3
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.31
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.33
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.19
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.16
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.18
rrl 1474710 n.1053T>A non_coding_transcript_exon_variant 0.29
rrl 1474711 n.1054G>C non_coding_transcript_exon_variant 0.29
rrl 1474712 n.1055G>A non_coding_transcript_exon_variant 0.29
rrl 1474713 n.1056T>A non_coding_transcript_exon_variant 0.29
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.51
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.49
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.6
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.58
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.6
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.65
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.51
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.35
rrl 1475061 n.1404C>A non_coding_transcript_exon_variant 0.6
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.59
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.62
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.26
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.15
rrl 1475353 n.1696A>T non_coding_transcript_exon_variant 0.16
rrl 1475354 n.1697A>G non_coding_transcript_exon_variant 0.16
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.15
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.17
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.38
rrl 1475429 n.1772G>T non_coding_transcript_exon_variant 0.46
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.56
rrl 1475479 n.1822C>G non_coding_transcript_exon_variant 0.61
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.6
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.63
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.67
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.7
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.67
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.65
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.19
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.26
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.62
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.56
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.55
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.55
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.55
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.66
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.53
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.53
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.55
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.42
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.38
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.39
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.41
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.42
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.41
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.42
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.42
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.45
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.49
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.5
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.5
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.5
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.5
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.51
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.59
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.53
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.62
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.62
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.57
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.57
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.57
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.71
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.57
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.66
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.66
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.24
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.27
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.28
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.29
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.31
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.32
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.36
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.31
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.28
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.28
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.2
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.2
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.62
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.62
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.63
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.62
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.62
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.63
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.68
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.67
rrl 1476664 n.3007T>C non_coding_transcript_exon_variant 0.57
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.57
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.51
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.43
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.33
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.31
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.3
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.33
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.22
inhA 1673553 c.-649C>T upstream_gene_variant 0.13
inhA 1673556 c.-646C>A upstream_gene_variant 0.13
inhA 1673682 c.-520G>C upstream_gene_variant 0.17
inhA 1673703 c.-499C>T upstream_gene_variant 0.19
fabG1 1673708 c.270_271delCC frameshift_variant 0.22
fabG1 1673714 c.275_276insT frameshift_variant 0.19
fabG1 1673717 c.278_279insA frameshift_variant 0.19
inhA 1673724 c.-478A>G upstream_gene_variant 0.18
inhA 1673730 c.-472C>G upstream_gene_variant 0.18
fabG1 1673760 p.Lys107Asn missense_variant 0.22
inhA 1673772 c.-430C>A upstream_gene_variant 0.26
inhA 1673778 c.-424C>G upstream_gene_variant 0.26
inhA 1673784 c.-418G>T upstream_gene_variant 0.25
inhA 1673787 c.-415G>C upstream_gene_variant 0.26
inhA 1673799 c.-403T>C upstream_gene_variant 0.23
inhA 1673802 c.-400A>G upstream_gene_variant 0.24
inhA 1673808 c.-394A>C upstream_gene_variant 0.22
inhA 1673877 c.-325C>G upstream_gene_variant 0.19
fabG1 1673905 p.Ser156Ala missense_variant 0.33
inhA 1673916 c.-286A>C upstream_gene_variant 0.33
fabG1 1673917 p.Val160Leu missense_variant 0.33
inhA 1673922 c.-280T>C upstream_gene_variant 0.28
inhA 1673931 c.-271C>G upstream_gene_variant 0.29
fabG1 1673941 p.Ala168Ser missense_variant 0.21
inhA 1674114 c.-88T>A upstream_gene_variant 0.16
inhA 1674123 c.-79T>C upstream_gene_variant 0.16
inhA 1674672 c.471C>A synonymous_variant 0.15
inhA 1674690 c.489C>G synonymous_variant 0.16
inhA 1674718 c.517A>C synonymous_variant 0.14
inhA 1674729 c.528G>T synonymous_variant 0.14
inhA 1674855 c.654C>G synonymous_variant 0.17
inhA 1674858 c.657G>A synonymous_variant 0.23
inhA 1674876 c.675C>T synonymous_variant 0.28
inhA 1674879 c.678T>G synonymous_variant 0.3
inhA 1674904 p.Ala235Pro missense_variant 0.27
inhA 1674924 c.723G>C synonymous_variant 0.22
inhA 1674930 c.729C>T synonymous_variant 0.16
rpsA 1833547 c.6G>A synonymous_variant 0.25
rpsA 1833554 p.Thr5Ser missense_variant 0.32
rpsA 1833589 c.48A>C synonymous_variant 0.46
rpsA 1833595 c.54T>G synonymous_variant 0.42
rpsA 1833596 p.Ser19Ala missense_variant 0.38
rpsA 1833616 c.75A>C synonymous_variant 0.45
rpsA 1833619 c.78A>C synonymous_variant 0.41
rpsA 1833628 c.87G>C synonymous_variant 0.43
rpsA 1833634 c.93G>A synonymous_variant 0.44
rpsA 1833661 c.120A>G synonymous_variant 0.46
rpsA 1833664 c.123C>A synonymous_variant 0.47
rpsA 1833676 c.135A>G synonymous_variant 0.47
rpsA 1833679 c.138G>T synonymous_variant 0.47
rpsA 1833685 c.144G>T synonymous_variant 0.44
rpsA 1833694 c.153G>C synonymous_variant 0.4
rpsA 1833697 c.156C>G synonymous_variant 0.37
rpsA 1833703 c.162C>T synonymous_variant 0.36
rpsA 1833709 c.168C>T synonymous_variant 0.38
rpsA 1833724 c.183C>T synonymous_variant 0.35
rpsA 1833727 c.186G>C synonymous_variant 0.36
rpsA 1833730 c.189C>T synonymous_variant 0.33
rpsA 1833733 c.192C>T synonymous_variant 0.32
rpsA 1833734 p.Ala65Ser missense_variant 0.32
rpsA 1833745 c.204G>C synonymous_variant 0.47
rpsA 1833760 c.219C>T synonymous_variant 0.48
rpsA 1833787 c.246C>G synonymous_variant 0.46
rpsA 1833790 c.249T>C synonymous_variant 0.45
rpsA 1833793 c.252C>T synonymous_variant 0.45
rpsA 1833802 c.261A>G synonymous_variant 0.47
rpsA 1833808 c.267G>C synonymous_variant 0.43
rpsA 1833811 c.270G>T synonymous_variant 0.4
rpsA 1833829 c.288A>G synonymous_variant 0.29
rpsA 1833832 c.291G>A synonymous_variant 0.29
rpsA 1833838 c.297G>C synonymous_variant 0.25
rpsA 1833841 c.300C>G synonymous_variant 0.28
rpsA 1833847 c.306C>G synonymous_variant 0.34
rpsA 1833856 c.315A>G synonymous_variant 0.42
rpsA 1833862 c.321G>T synonymous_variant 0.43
rpsA 1833894 p.Ala118Glu missense_variant 0.52
rpsA 1833904 c.363G>A synonymous_variant 0.49
rpsA 1833928 c.387G>C synonymous_variant 0.54
rpsA 1833949 c.408T>C synonymous_variant 0.51
rpsA 1833970 c.429G>T synonymous_variant 0.45
rpsA 1833976 c.435C>T synonymous_variant 0.42
rpsA 1833979 c.438T>C synonymous_variant 0.42
rpsA 1833991 c.450C>A synonymous_variant 0.52
rpsA 1834000 c.459G>C synonymous_variant 0.51
rpsA 1834009 c.468C>T synonymous_variant 0.46
rpsA 1834012 c.471G>T synonymous_variant 0.43
rpsA 1834015 c.474G>C synonymous_variant 0.46
rpsA 1834021 c.480C>T synonymous_variant 0.5
rpsA 1834030 c.489C>G synonymous_variant 0.56
rpsA 1834097 c.556_557delTCinsAG synonymous_variant 0.36
rpsA 1834102 c.561T>C synonymous_variant 0.35
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834189 c.648G>C synonymous_variant 0.38
rpsA 1834213 c.672G>C synonymous_variant 0.54
rpsA 1834234 c.693G>C synonymous_variant 0.56
rpsA 1834240 c.699T>C synonymous_variant 0.55
rpsA 1834246 c.705G>C synonymous_variant 0.47
rpsA 1834249 c.708T>C synonymous_variant 0.44
rpsA 1834252 c.711C>G synonymous_variant 0.44
rpsA 1834261 c.720A>G synonymous_variant 0.43
rpsA 1834264 c.723G>C synonymous_variant 0.43
rpsA 1834279 c.738C>T synonymous_variant 0.44
rpsA 1834297 c.756C>T synonymous_variant 0.37
rpsA 1834303 c.762T>G synonymous_variant 0.37
rpsA 1834306 c.765T>C synonymous_variant 0.41
rpsA 1834345 c.804C>T synonymous_variant 0.5
rpsA 1834348 c.807T>C synonymous_variant 0.48
rpsA 1834361 c.820T>C synonymous_variant 0.57
rpsA 1834366 c.825A>G synonymous_variant 0.56
rpsA 1834396 c.855G>C synonymous_variant 0.54
rpsA 1834411 c.870T>C synonymous_variant 0.57
rpsA 1834423 c.882G>T synonymous_variant 0.6
rpsA 1834451 c.910T>C synonymous_variant 0.6
rpsA 1834456 c.915T>G synonymous_variant 0.59
rpsA 1834468 c.927A>G synonymous_variant 0.52
rpsA 1834489 c.948T>C synonymous_variant 0.4
rpsA 1834498 c.957C>T synonymous_variant 0.36
rpsA 1834513 c.972C>G synonymous_variant 0.34
rpsA 1834520 p.Ala327Ser missense_variant 0.26
rpsA 1834528 c.987T>C synonymous_variant 0.21
rpsA 1834540 c.999G>C synonymous_variant 0.21
rpsA 1834543 c.1002C>G synonymous_variant 0.19
rpsA 1834546 c.1005T>C synonymous_variant 0.18
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.2
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.2
rpsA 1834606 c.1065C>T synonymous_variant 0.31
rpsA 1834609 c.1068T>C synonymous_variant 0.33
rpsA 1834619 c.1078T>C synonymous_variant 0.33
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.35
rpsA 1834633 c.1092A>G synonymous_variant 0.44
rpsA 1834639 c.1098T>C synonymous_variant 0.44
rpsA 1834666 c.1125G>C synonymous_variant 0.38
rpsA 1834667 p.Ala376Ser missense_variant 0.4
rpsA 1834690 c.1149T>C synonymous_variant 0.44
rpsA 1834732 c.1191T>C synonymous_variant 0.22
rpsA 1834738 c.1197A>G synonymous_variant 0.24
rpsA 1834753 c.1212T>C synonymous_variant 0.19
rpsA 1834756 c.1215G>A synonymous_variant 0.16
rpsA 1834759 c.1218A>C synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102638 c.405A>T synonymous_variant 0.2
ndh 2102644 c.399A>G synonymous_variant 0.21
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155659 p.Val151Leu missense_variant 0.15
katG 2155668 c.444G>C synonymous_variant 0.24
katG 2155674 c.438G>C synonymous_variant 0.26
katG 2155680 c.432G>A synonymous_variant 0.25
katG 2155691 c.421T>C synonymous_variant 0.28
katG 2155696 p.Ala139Val missense_variant 0.31
katG 2155716 c.396T>G synonymous_variant 0.34
katG 2155722 c.390G>C synonymous_variant 0.3
katG 2155728 c.384G>C synonymous_variant 0.23
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.38
kasA 2517959 c.-156C>T upstream_gene_variant 0.46
kasA 2517962 c.-153C>G upstream_gene_variant 0.43
kasA 2517968 c.-147T>C upstream_gene_variant 0.42
kasA 2517974 c.-141T>C upstream_gene_variant 0.41
kasA 2517980 c.-135C>T upstream_gene_variant 0.36
kasA 2517989 c.-126T>G upstream_gene_variant 0.26
kasA 2517993 c.-122G>T upstream_gene_variant 0.21
Rv2752c 3065022 c.1170G>C synonymous_variant 0.26
Rv2752c 3065058 c.1134C>G synonymous_variant 0.3
Rv2752c 3065061 c.1131C>T synonymous_variant 0.24
Rv2752c 3065064 c.1128G>C synonymous_variant 0.26
Rv2752c 3065070 c.1122C>T synonymous_variant 0.23
Rv2752c 3065229 c.963G>C synonymous_variant 0.21
Rv2752c 3065232 c.960T>C synonymous_variant 0.2
Rv2752c 3065235 c.957G>A synonymous_variant 0.2
Rv2752c 3065241 c.951A>G synonymous_variant 0.19
Rv2752c 3065249 c.943T>C synonymous_variant 0.18
Rv2752c 3065250 c.942G>A synonymous_variant 0.18
Rv2752c 3065255 p.Ser313Ala missense_variant 0.19
Rv2752c 3065268 c.924A>G synonymous_variant 0.19
Rv2752c 3065886 c.306C>G synonymous_variant 0.17
Rv2752c 3065898 c.294C>G synonymous_variant 0.18
Rv2752c 3065901 c.291A>C synonymous_variant 0.18
Rv2752c 3065907 c.285G>A synonymous_variant 0.17
Rv2752c 3065916 p.Phe92Tyr missense_variant 0.17
Rv2752c 3065947 p.Gly82Ala missense_variant 0.16
thyX 3067334 c.612C>A synonymous_variant 0.14
thyX 3067349 c.597G>C synonymous_variant 0.21
thyX 3067355 c.591A>G synonymous_variant 0.23
thyX 3067367 c.579G>C synonymous_variant 0.28
thyX 3067376 c.570G>C synonymous_variant 0.28
thyX 3067403 c.543C>G synonymous_variant 0.29
thyX 3067415 c.531C>T synonymous_variant 0.2
thyX 3067765 p.Leu61Ile missense_variant 0.16
thyX 3067771 p.Gly59Ser missense_variant 0.16
thyX 3067772 c.174C>G synonymous_variant 0.16
thyX 3067781 c.165C>G synonymous_variant 0.17
thyX 3067788 p.Lys53Arg missense_variant 0.16
thyX 3067808 c.138C>T synonymous_variant 0.15
thyA 3073905 c.567C>T synonymous_variant 1.0
thyA 3073920 c.552C>G synonymous_variant 1.0
thyA 3073925 c.547T>C synonymous_variant 1.0
thyA 3073926 c.546G>C synonymous_variant 1.0
thyA 3073929 c.543T>C synonymous_variant 1.0
thyA 3073953 c.519T>C synonymous_variant 1.0
thyA 3073959 c.513T>C synonymous_variant 1.0
thyA 3073962 c.510G>C synonymous_variant 1.0
thyA 3073971 c.501C>T synonymous_variant 1.0
thyA 3073977 c.495A>G synonymous_variant 1.0
thyA 3073983 c.489C>G synonymous_variant 1.0
thyA 3074160 c.312A>G synonymous_variant 1.0
thyA 3074163 p.Ala103Thr missense_variant 1.0
thyA 3074175 c.297A>G synonymous_variant 1.0
thyA 3074184 c.288A>T synonymous_variant 1.0
thyA 3074187 c.285T>C synonymous_variant 1.0
thyA 3074195 p.Ile93Val missense_variant 1.0
thyA 3074196 c.276G>C synonymous_variant 1.0
thyA 3074199 c.273G>A synonymous_variant 1.0
thyA 3074205 p.Glu89Asp missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 0.97
rpoA 3877569 p.Pro313Ala missense_variant 0.16
rpoA 3877587 c.921A>G synonymous_variant 0.42
rpoA 3877590 c.918G>C synonymous_variant 0.4
rpoA 3877593 c.915C>T synonymous_variant 0.4
rpoA 3877638 c.870T>C synonymous_variant 0.37
rpoA 3877647 c.861C>T synonymous_variant 0.35
rpoA 3877656 c.852T>G synonymous_variant 0.36
rpoA 3877668 c.840A>G synonymous_variant 0.3
rpoA 3877671 c.837C>G synonymous_variant 0.31
rpoA 3877677 c.831G>C synonymous_variant 0.3
rpoA 3877680 c.828G>C synonymous_variant 0.31
rpoA 3877683 c.825G>C synonymous_variant 0.34
rpoA 3877686 c.822A>G synonymous_variant 0.36
rpoA 3877695 c.813C>G synonymous_variant 0.43
rpoA 3877704 c.804G>T synonymous_variant 0.46
rpoA 3877728 c.780C>G synonymous_variant 0.34
rpoA 3877731 c.777G>T synonymous_variant 0.31
rpoA 3877734 c.774G>C synonymous_variant 0.31
rpoA 3877737 c.771G>C synonymous_variant 0.36
rpoA 3877743 c.765T>C synonymous_variant 0.37
rpoA 3877749 c.759C>T synonymous_variant 0.39
rpoA 3877764 c.744C>G synonymous_variant 0.3
rpoA 3877776 c.732T>C synonymous_variant 0.2
rpoA 3877782 c.726T>C synonymous_variant 0.28
rpoA 3877785 c.723C>A synonymous_variant 0.31
rpoA 3877818 c.690A>G synonymous_variant 0.38
rpoA 3877848 c.660C>T synonymous_variant 0.47
rpoA 3877856 c.652T>C synonymous_variant 0.36
rpoA 3877857 c.651G>A synonymous_variant 0.33
rpoA 3877866 c.642G>C synonymous_variant 0.36
rpoA 3877875 c.633T>A synonymous_variant 0.43
rpoA 3877878 c.630G>C synonymous_variant 0.4
rpoA 3877887 c.621G>C synonymous_variant 0.41
rpoA 3877893 c.615C>T synonymous_variant 0.4
rpoA 3877905 c.603A>G synonymous_variant 0.35
rpoA 3877908 c.600T>C synonymous_variant 0.35
rpoA 3877920 c.588G>C synonymous_variant 0.47
rpoA 3877926 c.582G>C synonymous_variant 0.49
rpoA 3877962 c.546G>T synonymous_variant 0.52
rpoA 3877971 p.Asp179Glu missense_variant 0.5
rpoA 3877986 c.522G>C synonymous_variant 0.42
rpoA 3877989 c.519A>G synonymous_variant 0.37
rpoA 3877995 c.513G>C synonymous_variant 0.3
rpoA 3878001 c.507A>G synonymous_variant 0.28
rpoA 3878061 c.447G>A synonymous_variant 0.18
rpoA 3878070 c.438T>C synonymous_variant 0.31
rpoA 3878082 c.426T>C synonymous_variant 0.4
rpoA 3878103 c.405A>G synonymous_variant 0.41
rpoA 3878118 c.390T>C synonymous_variant 0.42
rpoA 3878127 c.381G>C synonymous_variant 0.37
rpoA 3878143 p.Gly122Asp missense_variant 0.25
rpoA 3878145 c.363C>G synonymous_variant 0.24
rpoA 3878160 c.348C>G synonymous_variant 0.24
rpoA 3878163 c.345C>T synonymous_variant 0.27
rpoA 3878172 c.336G>A synonymous_variant 0.26
rpoA 3878187 c.321C>A synonymous_variant 0.32
rpoA 3878193 c.315T>C synonymous_variant 0.3
rpoA 3878197 p.Glu104Ala missense_variant 0.33
rpoA 3878205 c.303T>C synonymous_variant 0.41
rpoA 3878217 c.291A>G synonymous_variant 0.44
rpoA 3878238 c.270C>T synonymous_variant 0.49
rpoA 3878244 c.264G>A synonymous_variant 0.45
rpoA 3878247 c.261G>C synonymous_variant 0.45
rpoA 3878256 c.252G>C synonymous_variant 0.42
rpoA 3878264 p.Ser82Gly missense_variant 0.4
rpoA 3878271 c.237T>C synonymous_variant 0.38
rpoA 3878283 p.Glu75Asp missense_variant 0.33
rpoA 3878292 c.216T>C synonymous_variant 0.22
rpoA 3878331 c.177A>G synonymous_variant 0.19
rpoA 3878436 c.72A>G synonymous_variant 0.18
rpoA 3878442 c.66G>C synonymous_variant 0.3
rpoA 3878450 p.Gln20Lys missense_variant 0.3
rpoA 3878454 c.54A>C synonymous_variant 0.32
rpoA 3878465 p.Thr15Ala missense_variant 0.29
rpoA 3878470 p.Val13Thr missense_variant 0.29
rpoA 3878472 p.Asp12Glu missense_variant 0.29
rpoA 3878484 c.24C>A synonymous_variant 0.29
rpoA 3878490 c.18C>A synonymous_variant 0.29
rpoA 3878496 c.12A>T synonymous_variant 0.24
rpoA 3878672 c.-165A>T upstream_gene_variant 0.2
rpoA 3878683 c.-176G>C upstream_gene_variant 0.17
rpoA 3878689 c.-182G>A upstream_gene_variant 0.16
ddn 3986648 c.-196C>G upstream_gene_variant 0.21
ddn 3986661 c.-183C>A upstream_gene_variant 0.26
ddn 3986667 c.-177_-175delCTCinsACG upstream_gene_variant 0.25
ddn 3986696 c.-148G>C upstream_gene_variant 0.17
ddn 3986699 c.-145C>A upstream_gene_variant 0.17
clpC1 4038347 c.2358G>C synonymous_variant 0.23
clpC1 4038350 c.2355C>G synonymous_variant 0.25
clpC1 4038356 c.2349T>C synonymous_variant 0.24
clpC1 4038359 c.2346A>G synonymous_variant 0.25
clpC1 4038383 c.2322G>C synonymous_variant 0.31
clpC1 4038388 c.2317T>C synonymous_variant 0.28
clpC1 4038398 c.2307G>T synonymous_variant 0.23
clpC1 4038401 c.2302_2304delTTGinsCTC synonymous_variant 0.22
clpC1 4038410 c.2295C>T synonymous_variant 0.19
clpC1 4038419 c.2286T>C synonymous_variant 0.12
clpC1 4038499 p.Ser736Gly missense_variant 0.24
clpC1 4038519 p.Arg729Gln missense_variant 0.39
clpC1 4038530 p.Glu725Asp missense_variant 0.38
clpC1 4038533 p.Arg724Gln missense_variant 0.38
clpC1 4038536 c.2169C>G synonymous_variant 0.41
clpC1 4038551 c.2154C>G synonymous_variant 0.49
clpC1 4038563 c.2142C>T synonymous_variant 0.54
clpC1 4038584 c.2121G>A synonymous_variant 0.4
clpC1 4038587 c.2118C>G synonymous_variant 0.35
clpC1 4038596 c.2109A>G synonymous_variant 0.39
clpC1 4038602 c.2103G>C synonymous_variant 0.38
clpC1 4038623 c.2082A>G synonymous_variant 0.3
clpC1 4038640 p.Asp689Asn missense_variant 0.19
clpC1 4038647 c.2058T>G synonymous_variant 0.21
clpC1 4038671 c.2034T>G synonymous_variant 0.21
clpC1 4038679 p.Pro676Ala missense_variant 0.21
clpC1 4038683 c.2022T>C synonymous_variant 0.21
clpC1 4038695 c.2010C>G synonymous_variant 0.26
clpC1 4038704 c.2001T>C synonymous_variant 0.27
clpC1 4038710 c.1995G>C synonymous_variant 0.28
clpC1 4038713 c.1992T>C synonymous_variant 0.3
clpC1 4038725 c.1980C>G synonymous_variant 0.26
clpC1 4038740 c.1965G>C synonymous_variant 0.36
clpC1 4038755 c.1950G>C synonymous_variant 0.4
clpC1 4038767 c.1938G>T synonymous_variant 0.3
clpC1 4038770 c.1935C>T synonymous_variant 0.29
clpC1 4038773 c.1932T>C synonymous_variant 0.29
clpC1 4038776 c.1929G>A synonymous_variant 0.3
clpC1 4038779 c.1926C>G synonymous_variant 0.34
clpC1 4038782 c.1923G>C synonymous_variant 0.38
clpC1 4038790 c.1915C>T synonymous_variant 0.41
clpC1 4038812 c.1893T>C synonymous_variant 0.5
clpC1 4038815 c.1890G>C synonymous_variant 0.49
clpC1 4038842 c.1863G>C synonymous_variant 0.53
clpC1 4038860 c.1845G>C synonymous_variant 0.51
clpC1 4038878 c.1827A>G synonymous_variant 0.39
clpC1 4038890 c.1815G>A synonymous_variant 0.27
clpC1 4038905 c.1800A>G synonymous_variant 0.21
clpC1 4038908 c.1797C>G synonymous_variant 0.22
clpC1 4038911 c.1794G>T synonymous_variant 0.21
clpC1 4038914 c.1791G>C synonymous_variant 0.19
clpC1 4038917 c.1788C>T synonymous_variant 0.19
clpC1 4038923 c.1782A>G synonymous_variant 0.24
clpC1 4038941 c.1764G>C synonymous_variant 0.31
clpC1 4038953 c.1752A>G synonymous_variant 0.38
clpC1 4038956 c.1749T>C synonymous_variant 0.42
clpC1 4038965 c.1740T>C synonymous_variant 0.47
clpC1 4038971 c.1734T>C synonymous_variant 0.49
clpC1 4038974 c.1731T>C synonymous_variant 0.5
clpC1 4038989 c.1716T>C synonymous_variant 0.58
clpC1 4038997 c.1708T>C synonymous_variant 0.55
clpC1 4039022 c.1683A>G synonymous_variant 0.56
clpC1 4039046 c.1659C>T synonymous_variant 0.46
clpC1 4039064 c.1641C>T synonymous_variant 0.37
clpC1 4039067 c.1638G>C synonymous_variant 0.4
clpC1 4039079 c.1626C>G synonymous_variant 0.38
clpC1 4039085 c.1620A>G synonymous_variant 0.37
clpC1 4039091 c.1614G>C synonymous_variant 0.35
clpC1 4039097 c.1608G>T synonymous_variant 0.31
clpC1 4039100 c.1605C>T synonymous_variant 0.29
clpC1 4039103 c.1602T>C synonymous_variant 0.29
clpC1 4039106 c.1599G>C synonymous_variant 0.3
clpC1 4039118 c.1587C>A synonymous_variant 0.35
clpC1 4039142 c.1563A>G synonymous_variant 0.46
clpC1 4039145 c.1560G>C synonymous_variant 0.5
clpC1 4039169 c.1536A>G synonymous_variant 0.6
clpC1 4039178 c.1527G>C synonymous_variant 0.62
clpC1 4039183 c.1522T>C synonymous_variant 0.61
clpC1 4039187 c.1518G>T synonymous_variant 0.59
clpC1 4039190 c.1515C>G synonymous_variant 0.59
clpC1 4039220 c.1485G>C synonymous_variant 0.57
clpC1 4039241 c.1464G>C synonymous_variant 0.55
clpC1 4039274 c.1431G>C synonymous_variant 0.51
clpC1 4039286 c.1419T>C synonymous_variant 0.48
clpC1 4039292 c.1413C>G synonymous_variant 0.4
clpC1 4039295 c.1410A>C synonymous_variant 0.39
clpC1 4039298 c.1407T>C synonymous_variant 0.41
clpC1 4039310 c.1395A>G synonymous_variant 0.32
clpC1 4039313 c.1392C>G synonymous_variant 0.28
clpC1 4039339 p.Thr456Pro missense_variant 0.16
clpC1 4039352 c.1353C>T synonymous_variant 0.41
clpC1 4039361 c.1344C>G synonymous_variant 0.5
clpC1 4039382 c.1323C>G synonymous_variant 0.6
clpC1 4039391 c.1314T>G synonymous_variant 0.56
clpC1 4039394 c.1311G>C synonymous_variant 0.57
clpC1 4039397 c.1308A>G synonymous_variant 0.56
clpC1 4039409 c.1296T>C synonymous_variant 0.46
clpC1 4039412 c.1293T>G synonymous_variant 0.4
clpC1 4039415 p.Glu430Asp missense_variant 0.39
clpC1 4039430 c.1275T>C synonymous_variant 0.32
clpC1 4039484 c.1221T>C synonymous_variant 0.14
clpC1 4039487 c.1218G>C synonymous_variant 0.17
clpC1 4039517 c.1188C>G synonymous_variant 0.32
clpC1 4039541 c.1164C>G synonymous_variant 0.38
clpC1 4039556 c.1149G>C synonymous_variant 0.44
clpC1 4039559 c.1146C>G synonymous_variant 0.41
clpC1 4039570 p.Met379Leu missense_variant 0.32
clpC1 4039574 p.Ala377Gly missense_variant 0.29
clpC1 4039577 c.1128T>C synonymous_variant 0.29
clpC1 4039589 c.1116G>C synonymous_variant 0.36
clpC1 4039592 c.1113G>C synonymous_variant 0.36
clpC1 4039610 c.1095G>C synonymous_variant 0.37
clpC1 4039616 c.1089G>C synonymous_variant 0.33
clpC1 4039622 c.1083C>T synonymous_variant 0.4
clpC1 4039649 c.1056G>C synonymous_variant 0.47
clpC1 4039652 c.1053G>C synonymous_variant 0.49
clpC1 4039670 c.1035G>C synonymous_variant 0.47
clpC1 4039682 c.1023C>G synonymous_variant 0.49
clpC1 4039694 c.1011G>C synonymous_variant 0.49
clpC1 4039724 c.981A>G synonymous_variant 0.53
clpC1 4039733 c.972G>C synonymous_variant 0.51
clpC1 4039742 c.963C>T synonymous_variant 0.51
clpC1 4039748 c.957G>C synonymous_variant 0.47
clpC1 4039751 c.954A>G synonymous_variant 0.44
clpC1 4039757 c.948A>G synonymous_variant 0.44
clpC1 4039760 c.945T>C synonymous_variant 0.44
clpC1 4039769 c.936C>G synonymous_variant 0.48
clpC1 4039793 c.912C>G synonymous_variant 0.43
clpC1 4039802 c.903G>C synonymous_variant 0.42
clpC1 4039817 c.888A>T synonymous_variant 0.31
clpC1 4039823 c.882T>C synonymous_variant 0.32
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.31
clpC1 4039832 c.873C>A synonymous_variant 0.27
clpC1 4039850 c.855T>C synonymous_variant 0.28
clpC1 4039865 c.840T>C synonymous_variant 0.34
clpC1 4039883 c.822G>A synonymous_variant 0.38
clpC1 4039889 c.816G>C synonymous_variant 0.41
clpC1 4039898 c.807C>G synonymous_variant 0.48
clpC1 4039904 c.801A>G synonymous_variant 0.53
clpC1 4039931 c.774T>C synonymous_variant 0.53
clpC1 4039934 c.771G>A synonymous_variant 0.51
clpC1 4039937 c.768G>C synonymous_variant 0.51
clpC1 4039946 c.759A>T synonymous_variant 0.49
clpC1 4039949 c.756G>C synonymous_variant 0.48
clpC1 4039952 c.753T>C synonymous_variant 0.51
clpC1 4039958 c.747G>C synonymous_variant 0.53
clpC1 4039991 c.714G>C synonymous_variant 0.42
clpC1 4040003 c.702G>C synonymous_variant 0.45
clpC1 4040021 c.684A>C synonymous_variant 0.5
clpC1 4040024 c.681A>G synonymous_variant 0.52
clpC1 4040033 c.672G>C synonymous_variant 0.55
clpC1 4040042 c.663C>T synonymous_variant 0.59
clpC1 4040087 c.618G>C synonymous_variant 0.5
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.48
clpC1 4040093 c.612C>G synonymous_variant 0.48
clpC1 4040126 c.579C>T synonymous_variant 0.41
clpC1 4040141 c.564C>T synonymous_variant 0.26
clpC1 4040144 c.561G>C synonymous_variant 0.18
clpC1 4040237 c.468C>G synonymous_variant 0.17
clpC1 4040249 c.456A>G synonymous_variant 0.21
clpC1 4040258 c.447G>A synonymous_variant 0.33
clpC1 4040267 c.438A>G synonymous_variant 0.36
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.36
clpC1 4040279 c.426C>G synonymous_variant 0.37
clpC1 4040288 c.417C>T synonymous_variant 0.34
clpC1 4040306 c.399G>C synonymous_variant 0.21
clpC1 4040309 c.396C>G synonymous_variant 0.21
clpC1 4040495 c.210C>G synonymous_variant 0.2
clpC1 4040522 c.183T>C synonymous_variant 0.24
clpC1 4040531 c.174T>C synonymous_variant 0.23
clpC1 4040546 c.159G>C synonymous_variant 0.24
clpC1 4040561 c.144A>G synonymous_variant 0.23
clpC1 4040644 c.61A>C synonymous_variant 0.3
clpC1 4040648 c.57G>A synonymous_variant 0.32
clpC1 4040654 c.51G>A synonymous_variant 0.38
clpC1 4040657 c.48T>G synonymous_variant 0.38
clpC1 4040695 c.10C>A synonymous_variant 0.26
clpC1 4040696 c.9A>G synonymous_variant 0.23
clpC1 4040699 c.6C>T synonymous_variant 0.24
clpC1 4040711 c.-7G>A upstream_gene_variant 0.2
panD 4044195 c.87T>C synonymous_variant 0.28
panD 4044210 c.72C>T synonymous_variant 0.28
panD 4044213 c.69C>G synonymous_variant 0.29
panD 4044258 c.24G>C synonymous_variant 0.19
panD 4044261 c.21G>A synonymous_variant 0.15
embC 4240717 c.855T>C synonymous_variant 0.3
embC 4240777 c.915G>A synonymous_variant 0.42
embC 4240780 c.918T>C synonymous_variant 0.4
embC 4240783 c.921G>C synonymous_variant 0.38
embC 4240789 c.927T>C synonymous_variant 0.39
embC 4240819 c.957A>C synonymous_variant 0.28
embC 4240828 c.966G>A synonymous_variant 0.26
embC 4240831 c.969T>G synonymous_variant 0.26
embC 4241022 p.Ala387Val missense_variant 0.94
embC 4241047 c.1185C>G synonymous_variant 0.2
embC 4241050 c.1188T>G synonymous_variant 0.2
embC 4241053 c.1191G>C synonymous_variant 0.19
embC 4241059 c.1197G>A synonymous_variant 0.18
embC 4241074 c.1212G>C synonymous_variant 0.16
embC 4241626 c.1764T>C synonymous_variant 0.14
embC 4241635 c.1773G>C synonymous_variant 0.13
embC 4241665 c.1803G>T synonymous_variant 0.14
embC 4241691 p.Gly610Ala missense_variant 0.14
embC 4241750 p.Leu630Met missense_variant 0.15
embC 4241756 c.1894C>T synonymous_variant 0.2
embC 4241767 c.1905C>G synonymous_variant 0.22
embC 4241769 p.Ser636Thr missense_variant 0.21
embC 4241791 c.1929G>C synonymous_variant 0.17
embC 4241794 c.1932C>G synonymous_variant 0.16
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4244681 c.1449A>C synonymous_variant 0.17
embA 4244684 c.1452C>G synonymous_variant 0.18
embA 4244695 p.Lys488Thr missense_variant 0.19
embA 4244712 p.Ala494Ser missense_variant 0.18
embA 4244726 p.Asp498Glu missense_variant 0.17
embA 4245053 c.1821G>C synonymous_variant 0.21
embA 4245060 c.1828T>C synonymous_variant 0.28
embA 4245071 c.1839G>C synonymous_variant 0.35
embA 4245083 c.1851A>C synonymous_variant 0.41
embA 4245089 c.1857G>C synonymous_variant 0.4
embA 4245092 c.1860C>G synonymous_variant 0.38
embA 4245094 p.Ile621Thr missense_variant 0.37
embA 4245101 c.1869G>C synonymous_variant 0.34
embA 4245125 c.1893G>C synonymous_variant 0.27
embA 4245431 c.2199T>C synonymous_variant 0.19
embA 4245449 c.2217G>C synonymous_variant 0.17
embA 4245454 p.Ala741Val missense_variant 0.17
embA 4245459 p.Pro743Ala missense_variant 0.18
embA 4245465 p.Pro745Thr missense_variant 0.18
embB 4247449 c.936C>T synonymous_variant 0.3
embB 4247455 c.942C>T synonymous_variant 0.36
embB 4247464 c.951C>G synonymous_variant 0.4
embB 4247470 c.957T>C synonymous_variant 0.42
embB 4247491 c.978G>C synonymous_variant 0.39
embB 4247497 c.984T>C synonymous_variant 0.4
embB 4247511 p.Tyr333Phe missense_variant 0.39
embB 4247527 c.1014G>C synonymous_variant 0.23
embB 4248170 p.Ala553Ser missense_variant 0.16
embB 4248173 p.Val554Leu missense_variant 0.19
embB 4248199 c.1686A>G synonymous_variant 0.29
embB 4248200 p.Ile563Val missense_variant 0.29
embB 4248206 p.Ser565Gly missense_variant 0.29
embB 4248220 c.1707A>G synonymous_variant 0.27
embB 4248225 p.Ala571Val missense_variant 0.23
embB 4248242 p.Val577Ile missense_variant 0.4
embB 4248252 p.Gly580Ala missense_variant 0.33
embB 4248256 c.1743C>G synonymous_variant 0.34
embB 4248264 p.Phe584Cys missense_variant 0.35
embB 4248277 c.1764G>C synonymous_variant 0.4
embB 4248304 c.1791G>C synonymous_variant 0.26
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407620 p.Tyr195His missense_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0