Rv0668 - c.552G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
94 Sensitive
1 RR-TB
31 HR-TB
8 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
36 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 114 |
| La1.8.1 | 2 |
| La3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| 1 | |
| lineage2.2.1 | 10 |
| La1.7;lineage4.9 | 3 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage1.1.2 | 2 |
| lineage4.8 | 2 |
| lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 2 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage4.6.2.2 | 1 |
| lineage3 | 2 |
| lineage4.1.2 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.8;lineage4.9 | 2 |
| La1.6;lineage4 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.4.2 | 1 |
| La1.7.1 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| La1.2.BCG | 1 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 175 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR363500 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR29055611 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR1063896 | Sensitive | None | ERR369158 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR29050859 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR29096873 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR28351347 | Other | lineage3 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096935 | Sensitive | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR29231425 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None |
|---|
