TB-Profiler result

Run: SRR12708392
Summary

Run ID: SRR12708392

Sample name:

Date: 2024-10-05T04:57:26.075161

Number of reads: 775897

Percentage reads mapped: 36.75

Median coverage: 19.0

Strain: lineage2.2.1

Spoligotype:

Drug-resistance: Other

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Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
lineage2 East-Asian RD105 0.99
lineage2.2.1 East-Asian (Beijing) RD105;RD207;RD181 1.0
lineage2.2 East-Asian (Beijing) RD105;RD207 1.0
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide pncA c.146_149delACTT Assoc w R
streptomycin
fluoroquinolones
moxifloxacin gyrA p.Ser91Pro Assoc w R Low-level resistance (multiple, genetically linked low-level resistance mutations are additive and confer high-level resistance)
ofloxacin
levofloxacin gyrA p.Ser91Pro Assoc w R
ciprofloxacin
aminoglycosides
amikacin
capreomycin
kanamycin
cycloserine
ethionamide
clofazimine
para-aminosalicylic_acid
delamanid
bedaquiline
linezolid rplC p.Cys154Arg Assoc w R
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
gyrA 7572 p.Ser91Pro missense_variant 0.85 levofloxacin Assoc w R
moxifloxacin Assoc w R Low-level resistance (multiple, genetically linked low-level resistance mutations are additive and confer high-level resistance)
rplC 801268 p.Cys154Arg missense_variant 1.0 linezolid Assoc w R
pncA 2289092 c.146_149delACTT frameshift_variant 1.0 pyrazinamide Assoc w R
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
dnaA 1285 p.Glu429Lys missense_variant 1.0 isoniazid Uncertain significance
gyrB 6663 p.Phe475Tyr missense_variant 0.2 levofloxacin
moxifloxacin
gyrA 6670 c.-632G>C upstream_gene_variant 0.22 levofloxacin
moxifloxacin
gyrA 6673 c.-629A>T upstream_gene_variant 0.22 levofloxacin
moxifloxacin
gyrA 6676 c.-626T>C upstream_gene_variant 0.24 levofloxacin
moxifloxacin
gyrB 6680 c.1441C>T synonymous_variant 0.27 levofloxacin Not assoc w R - Interim
moxifloxacin Not assoc w R - Interim
gyrA 6700 c.-602T>C upstream_gene_variant 0.3 levofloxacin
moxifloxacin
gyrA 6709 c.-593A>G upstream_gene_variant 0.31 levofloxacin
moxifloxacin
gyrA 6724 c.-578G>C upstream_gene_variant 0.31 levofloxacin
moxifloxacin
gyrA 6730 c.-572A>G upstream_gene_variant 0.33 levofloxacin
moxifloxacin
gyrA 6742 c.-560A>G upstream_gene_variant 0.32 levofloxacin
moxifloxacin
gyrB 6745 c.1506T>C synonymous_variant 0.3 levofloxacin Not assoc w R - Interim
moxifloxacin Not assoc w R - Interim
gyrB 6749 p.Ala504Ser missense_variant 0.3 levofloxacin
moxifloxacin
gyrB 6764 p.Leu509Phe missense_variant 0.27 levofloxacin
moxifloxacin
gyrB 6772 c.1533C>G synonymous_variant 0.24 levofloxacin Not assoc w R - Interim
moxifloxacin Not assoc w R - Interim
gyrB 6775 c.1536G>C synonymous_variant 0.21 levofloxacin Not assoc w R - Interim
moxifloxacin Not assoc w R - Interim
gyrA 7362 p.Glu21Gln missense_variant 1.0 levofloxacin Not assoc w R
moxifloxacin Not assoc w R
gyrA 7585 p.Ser95Thr missense_variant 1.0 levofloxacin Not assoc w R
moxifloxacin Not assoc w R
gyrA 9181 c.1881_1883delTCG disruptive_inframe_deletion 0.28 levofloxacin
moxifloxacin
gyrA 9187 c.1886_1887insGGC disruptive_inframe_insertion 0.3 levofloxacin
moxifloxacin
gyrA 9191 c.1890G>C synonymous_variant 0.29 levofloxacin
moxifloxacin
gyrA 9200 c.1899A>G synonymous_variant 0.32 levofloxacin Not assoc w R - Interim
moxifloxacin Not assoc w R - Interim
gyrA 9212 c.1911G>C synonymous_variant 0.28 levofloxacin
moxifloxacin
gyrA 9213 p.Thr638Ser missense_variant 0.28 levofloxacin
moxifloxacin
gyrA 9230 c.1929T>C synonymous_variant 0.29 levofloxacin
moxifloxacin
gyrA 9233 c.1932C>T synonymous_variant 0.28 levofloxacin
moxifloxacin
gyrA 9236 c.1935G>C synonymous_variant 0.29 levofloxacin
moxifloxacin
gyrA 9242 c.1941A>C synonymous_variant 0.28 levofloxacin
moxifloxacin
gyrA 9254 c.1953C>G synonymous_variant 0.3 levofloxacin
moxifloxacin
gyrA 9265 p.Asp655Gly missense_variant 0.3 levofloxacin
moxifloxacin
gyrA 9267 p.Asn656Asp missense_variant 0.3 levofloxacin
moxifloxacin
gyrA 9304 p.Gly668Asp missense_variant 1.0 levofloxacin Not assoc w R
moxifloxacin Not assoc w R
fgd1 491013 c.231C>G synonymous_variant 0.52 pretomanid
delamanid
clofazimine
fgd1 491037 c.255C>G synonymous_variant 0.5 pretomanid
delamanid
clofazimine
fgd1 491043 c.261T>G synonymous_variant 0.5 pretomanid
delamanid
clofazimine
fgd1 491049 c.267T>G synonymous_variant 0.52 pretomanid
delamanid
clofazimine
fgd1 491063 p.Gly94Ala missense_variant 0.5 pretomanid
delamanid
clofazimine
fgd1 491082 c.300T>C synonymous_variant 0.46 pretomanid
delamanid
clofazimine
fgd1 491083 p.Val101Ile missense_variant 0.46 pretomanid
delamanid
clofazimine
fgd1 491091 c.309T>C synonymous_variant 0.48 pretomanid
delamanid
clofazimine
fgd1 491097 c.315G>C synonymous_variant 0.48 pretomanid
delamanid
clofazimine
fgd1 491106 c.324T>C synonymous_variant 0.5 pretomanid
delamanid
clofazimine
fgd1 491112 c.330G>C synonymous_variant 0.45 pretomanid
delamanid
clofazimine
fgd1 491742 c.960T>C synonymous_variant 0.95 pretomanid
delamanid Not assoc w R - Interim
clofazimine Not assoc w R
mshA 575907 p.Ala187Val missense_variant 1.0 isoniazid Not assoc w R
ethionamide Not assoc w R
Rv0565c 657081 c.390G>A synonymous_variant 1.0 ethionamide Not assoc w R - Interim
Rv0565c 657142 p.Arg110His missense_variant 1.0 ethionamide Uncertain significance
nusG 734421 c.168A>G synonymous_variant 0.68 rifampicin
nusG 734424 c.171G>C synonymous_variant 0.68 rifampicin
nusG 734439 c.186C>G synonymous_variant 0.71 rifampicin
nusG 734451 c.198G>C synonymous_variant 0.75 rifampicin
nusG 734454 c.201A>G synonymous_variant 0.77 rifampicin
nusG 734460 c.207G>T synonymous_variant 0.77 rifampicin Not assoc w R - Interim
nusG 734472 c.219T>C synonymous_variant 0.81 rifampicin
nusG 734475 c.222T>C synonymous_variant 0.81 rifampicin Not assoc w R - Interim
nusG 734502 c.249G>A synonymous_variant 0.78 rifampicin
nusG 734532 c.279A>G synonymous_variant 0.72 rifampicin Not assoc w R - Interim
nusG 734541 c.288A>G synonymous_variant 0.68 rifampicin Not assoc w R - Interim
nusG 734559 c.306T>C synonymous_variant 0.56 rifampicin
nusG 734571 c.318C>G synonymous_variant 0.42 rifampicin
nusG 734580 c.327T>C synonymous_variant 0.33 rifampicin Not assoc w R - Interim
nusG 734807 p.Tyr185Phe missense_variant 0.58 rifampicin
nusG 734814 c.561G>C synonymous_variant 0.57 rifampicin
nusG 734820 c.567A>G synonymous_variant 0.52 rifampicin Not assoc w R - Interim
nusG 734826 c.573A>C synonymous_variant 0.52 rifampicin
nusG 734841 c.588G>C synonymous_variant 0.39 rifampicin
nusG 734844 c.591G>C synonymous_variant 0.38 rifampicin
nusG 734847 c.594T>C synonymous_variant 0.38 rifampicin
nusG 734850 c.597C>G synonymous_variant 0.36 rifampicin
nusG 734853 c.600A>G synonymous_variant 0.38 rifampicin
nusG 734854 c.601T>C synonymous_variant 0.38 rifampicin
nusG 734859 c.606G>C synonymous_variant 0.36 rifampicin
nusG 734863 p.Thr204Ser missense_variant 0.36 rifampicin
nusG 734886 c.633A>G synonymous_variant 0.35 rifampicin
nusG 734895 c.642A>G synonymous_variant 0.35 rifampicin
nusG 734898 c.645C>G synonymous_variant 0.34 rifampicin
nusG 734910 c.657C>G synonymous_variant 0.3 rifampicin
nusG 734913 c.660C>G synonymous_variant 0.28 rifampicin
rpoB 760106 c.300G>C synonymous_variant 0.26 rifampicin
rpoB 760112 c.306T>C synonymous_variant 0.34 rifampicin
rpoB 760118 c.312T>G synonymous_variant 0.39 rifampicin Not assoc w R - Interim
rpoB 760121 c.315T>C synonymous_variant 0.47 rifampicin Not assoc w R - Interim
rpoB 760130 p.Asp108Glu missense_variant 0.54 rifampicin Uncertain significance
rpoB 760139 c.333A>C synonymous_variant 0.56 rifampicin
rpoB 760140 p.Pro112Ser missense_variant 0.58 rifampicin
rpoB 760143 p.Val113Ile missense_variant 0.57 rifampicin Uncertain significance
rpoB 760148 p.Asp114Glu missense_variant 0.64 rifampicin
rpoB 760157 c.351A>G synonymous_variant 0.62 rifampicin
rpoB 760172 c.366G>C synonymous_variant 0.69 rifampicin
rpoB 760181 c.375T>G synonymous_variant 0.69 rifampicin
rpoB 760184 c.378A>G synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoB 760187 c.381G>C synonymous_variant 0.74 rifampicin
rpoB 760199 c.393C>G synonymous_variant 0.77 rifampicin
rpoB 760235 c.429T>C synonymous_variant 0.67 rifampicin Not assoc w R - Interim
rpoB 760244 c.438G>C synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoB 760274 p.Glu156Asp missense_variant 0.35 rifampicin Uncertain significance
rpoB 760415 c.609C>T synonymous_variant 0.35 rifampicin Not assoc w R - Interim
rpoB 760424 c.618C>G synonymous_variant 0.35 rifampicin Not assoc w R - Interim
rpoB 760430 c.624T>C synonymous_variant 0.36 rifampicin Not assoc w R - Interim
rpoB 760475 c.669A>G synonymous_variant 0.4 rifampicin Not assoc w R - Interim
rpoB 760478 c.672C>T synonymous_variant 0.4 rifampicin Not assoc w R - Interim
rpoB 760481 c.675G>T synonymous_variant 0.42 rifampicin
rpoB 760484 c.678A>G synonymous_variant 0.46 rifampicin Not assoc w R - Interim
rpoB 760487 c.681G>C synonymous_variant 0.41 rifampicin
rpoB 760502 c.696C>G synonymous_variant 0.43 rifampicin Not assoc w R - Interim
rpoB 760508 c.702G>T synonymous_variant 0.39 rifampicin
rpoB 760511 c.705G>C synonymous_variant 0.37 rifampicin
rpoB 760522 p.Ser239Thr missense_variant 0.3 rifampicin
rpoB 760589 c.783C>G synonymous_variant 0.35 rifampicin
rpoB 760591 p.Val262Ala missense_variant 0.36 rifampicin
rpoB 760611 c.805_807delTTGinsCTC synonymous_variant 0.46 rifampicin
rpoB 760649 c.843G>C synonymous_variant 0.56 rifampicin
rpoB 760655 c.849A>G synonymous_variant 0.56 rifampicin Not assoc w R - Interim
rpoB 760659 c.853_855delTCAinsAGC synonymous_variant 0.52 rifampicin
rpoB 760670 c.864G>C synonymous_variant 0.52 rifampicin
rpoB 760674 c.868T>C synonymous_variant 0.52 rifampicin Not assoc w R - Interim
rpoB 760679 c.873A>G synonymous_variant 0.53 rifampicin Not assoc w R - Interim
rpoB 760683 c.877T>C synonymous_variant 0.52 rifampicin Not assoc w R - Interim
rpoB 760712 c.906G>C synonymous_variant 0.39 rifampicin
rpoB 760715 c.909C>T synonymous_variant 0.33 rifampicin Not assoc w R - Interim
rpoB 760883 c.1077G>C synonymous_variant 0.47 rifampicin
rpoB 760886 c.1080A>G synonymous_variant 0.44 rifampicin
rpoB 760887 p.Thr361Val missense_variant 0.44 rifampicin Uncertain significance
rpoB 760919 c.1113C>T synonymous_variant 0.71 rifampicin
rpoB 760925 c.1119T>C synonymous_variant 0.75 rifampicin
rpoB 760934 c.1128C>T synonymous_variant 0.79 rifampicin
rpoB 760946 c.1140A>G synonymous_variant 0.83 rifampicin Not assoc w R - Interim
rpoB 760958 c.1152G>C synonymous_variant 0.82 rifampicin
rpoB 760961 c.1155C>G synonymous_variant 0.82 rifampicin Not assoc w R - Interim
rpoB 760965 p.Met387Leu missense_variant 0.8 rifampicin Uncertain significance
rpoB 760970 c.1164G>C synonymous_variant 0.79 rifampicin Not assoc w R - Interim
rpoB 760973 c.1167G>C synonymous_variant 0.79 rifampicin
rpoB 760982 c.1176G>C synonymous_variant 0.79 rifampicin Not assoc w R - Interim
rpoB 760991 c.1185G>T synonymous_variant 0.77 rifampicin Not assoc w R - Interim
rpoB 761015 c.1209G>C synonymous_variant 0.77 rifampicin Not assoc w R - Interim
rpoB 761027 c.1221A>G synonymous_variant 0.78 rifampicin Not assoc w R - Interim
rpoB 761036 c.1230G>C synonymous_variant 0.78 rifampicin Not assoc w R - Interim
rpoB 761037 c.1231T>C synonymous_variant 0.78 rifampicin Not assoc w R - Interim
rpoB 761051 c.1245G>C synonymous_variant 0.84 rifampicin Not assoc w R - Interim
rpoB 761057 c.1251G>C synonymous_variant 0.81 rifampicin Not assoc w R - Interim
rpoB 761084 c.1278C>A synonymous_variant 0.76 rifampicin Not assoc w R - Interim
rpoB 761087 c.1281C>G synonymous_variant 0.74 rifampicin
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.74 rifampicin
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.74 rifampicin
rpoB 761102 c.1296A>G synonymous_variant 0.76 rifampicin
rpoB 761132 c.1326G>T synonymous_variant 0.74 rifampicin Not assoc w R - Interim
rpoB 761133 c.1327T>C synonymous_variant 0.75 rifampicin Not assoc w R - Interim
rpoB 761147 c.1341C>T synonymous_variant 0.7 rifampicin Not assoc w R - Interim
rpoB 761150 c.1344A>T synonymous_variant 0.7 rifampicin Not assoc w R - Interim
rpoB 761165 c.1359G>C synonymous_variant 0.67 rifampicin Not assoc w R - Interim
rpoB 761168 c.1362C>G synonymous_variant 0.63 rifampicin
rpoB 761171 c.1365C>T synonymous_variant 0.66 rifampicin Not assoc w R - Interim
rpoB 761180 c.1374A>C synonymous_variant 0.64 rifampicin Not assoc w R - Interim
rpoB 761189 c.1383T>C synonymous_variant 0.64 rifampicin Not assoc w R - Interim
rpoB 761195 c.1389G>C synonymous_variant 0.61 rifampicin Not assoc w R - Interim
rpoB 761198 c.1392G>C synonymous_variant 0.6 rifampicin Not assoc w R - Interim
rpoB 761204 c.1398C>G synonymous_variant 0.65 rifampicin
rpoB 761234 c.1428G>C synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoB 761249 c.1443A>G synonymous_variant 0.7 rifampicin Not assoc w R - Interim
rpoB 761255 c.1449T>C synonymous_variant 0.69 rifampicin
rpoB 761261 c.1455G>T synonymous_variant 0.67 rifampicin Not assoc w R - Interim
rpoB 761264 c.1458C>G synonymous_variant 0.64 rifampicin Not assoc w R - Interim
rpoB 761282 c.1476C>T synonymous_variant 0.62 rifampicin
rpoB 761285 c.1479G>C synonymous_variant 0.62 rifampicin
rpoB 761288 c.1482G>C synonymous_variant 0.62 rifampicin Not assoc w R - Interim
rpoB 761318 c.1512G>C synonymous_variant 0.61 rifampicin Not assoc w R - Interim
rpoB 761327 c.1521A>G synonymous_variant 0.55 rifampicin Not assoc w R - Interim
rpoB 761345 c.1539G>C synonymous_variant 0.48 rifampicin
rpoB 761537 c.1731C>G synonymous_variant 0.48 rifampicin Not assoc w R - Interim
rpoB 761540 c.1734C>A synonymous_variant 0.5 rifampicin
rpoB 761549 c.1743G>C synonymous_variant 0.53 rifampicin
rpoB 761555 c.1749G>C synonymous_variant 0.52 rifampicin Not assoc w R - Interim
rpoB 761558 c.1752C>G synonymous_variant 0.53 rifampicin Not assoc w R - Interim
rpoB 761561 c.1755C>G synonymous_variant 0.53 rifampicin
rpoB 761570 c.1764T>C synonymous_variant 0.55 rifampicin Not assoc w R - Interim
rpoB 761573 c.1767C>G synonymous_variant 0.55 rifampicin Not assoc w R - Interim
rpoB 761579 c.1773G>C synonymous_variant 0.55 rifampicin Not assoc w R - Interim
rpoB 761600 c.1794T>C synonymous_variant 0.59 rifampicin
rpoB 761612 c.1806G>C synonymous_variant 0.57 rifampicin Not assoc w R - Interim
rpoB 761615 c.1809A>G synonymous_variant 0.59 rifampicin Not assoc w R - Interim
rpoB 761627 c.1821C>T synonymous_variant 0.57 rifampicin Not assoc w R - Interim
rpoB 761633 c.1827G>C synonymous_variant 0.54 rifampicin
rpoB 761847 p.Cys681Arg missense_variant 0.64 rifampicin Uncertain significance
rpoB 761852 c.2046C>G synonymous_variant 0.64 rifampicin
rpoB 761863 p.Ala686Glu missense_variant 0.64 rifampicin
rpoB 761867 c.2061C>T synonymous_variant 0.62 rifampicin
rpoB 761868 p.Asp688Gln missense_variant 0.62 rifampicin
rpoB 761873 c.2067A>C synonymous_variant 0.67 rifampicin
rpoB 761885 c.2079T>C synonymous_variant 0.67 rifampicin
rpoB 761892 p.Ile696Leu missense_variant 0.7 rifampicin
rpoB 761906 c.2100C>G synonymous_variant 0.65 rifampicin
rpoB 761909 c.2103T>C synonymous_variant 0.68 rifampicin
rpoB 761912 c.2106T>C synonymous_variant 0.68 rifampicin
rpoB 761915 p.Asp703Glu missense_variant 0.68 rifampicin
rpoB 761916 p.Asp704Asn missense_variant 0.68 rifampicin
rpoB 761921 c.2115C>T synonymous_variant 0.7 rifampicin
rpoB 761948 c.2142G>C synonymous_variant 0.68 rifampicin Not assoc w R - Interim
rpoB 761951 c.2145G>C synonymous_variant 0.66 rifampicin
rpoB 761955 p.Ile717Val missense_variant 0.68 rifampicin Uncertain significance
rpoB 762002 c.2196C>G synonymous_variant 0.74 rifampicin
rpoB 762003 p.Asn733Gln missense_variant 0.74 rifampicin
rpoB 762011 c.2205G>C synonymous_variant 0.78 rifampicin Not assoc w R - Interim
rpoB 762014 c.2208C>G synonymous_variant 0.78 rifampicin Not assoc w R - Interim
rpoB 762026 c.2220G>C synonymous_variant 0.78 rifampicin
rpoB 762029 c.2223C>G synonymous_variant 0.78 rifampicin Not assoc w R - Interim
rpoB 762053 c.2247T>C synonymous_variant 0.79 rifampicin Not assoc w R - Interim
rpoB 762062 c.2256T>C synonymous_variant 0.8 rifampicin Not assoc w R - Interim
rpoB 762065 c.2259T>C synonymous_variant 0.77 rifampicin Not assoc w R - Interim
rpoB 762080 c.2274G>C synonymous_variant 0.74 rifampicin
rpoB 762086 c.2280G>C synonymous_variant 0.68 rifampicin Not assoc w R - Interim
rpoB 762098 c.2292C>G synonymous_variant 0.7 rifampicin
rpoB 762110 c.2304G>C synonymous_variant 0.7 rifampicin
rpoB 762114 p.Ile770Val missense_variant 0.69 rifampicin Uncertain significance
rpoB 762119 c.2313C>G synonymous_variant 0.67 rifampicin
rpoB 762128 c.2322G>T synonymous_variant 0.65 rifampicin
rpoB 762134 c.2328C>G synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoB 762140 c.2334G>C synonymous_variant 0.6 rifampicin
rpoB 762143 c.2337T>C synonymous_variant 0.62 rifampicin
rpoB 762149 c.2343G>C synonymous_variant 0.59 rifampicin Not assoc w R - Interim
rpoB 762156 p.Val784Ile missense_variant 0.56 rifampicin
rpoB 762170 c.2364C>G synonymous_variant 0.43 rifampicin Not assoc w R - Interim
rpoB 762176 c.2370T>C synonymous_variant 0.38 rifampicin Not assoc w R - Interim
rpoB 762179 c.2373C>T synonymous_variant 0.38 rifampicin
rpoB 762185 c.2379G>C synonymous_variant 0.37 rifampicin Not assoc w R - Interim
rpoB 762188 c.2382C>T synonymous_variant 0.37 rifampicin
rpoB 762189 p.Ile795Val missense_variant 0.37 rifampicin
rpoB 762209 c.2403C>G synonymous_variant 0.48 rifampicin Not assoc w R - Interim
rpoB 762218 c.2412T>C synonymous_variant 0.36 rifampicin
rpoB 762230 c.2424G>C synonymous_variant 0.31 rifampicin
rpoB 762233 c.2427G>C synonymous_variant 0.3 rifampicin Not assoc w R - Interim
rpoB 762245 c.2439G>T synonymous_variant 0.3 rifampicin
rpoB 762246 c.2440C>T synonymous_variant 0.27 rifampicin
rpoB 762254 c.2448T>C synonymous_variant 0.4 rifampicin Not assoc w R - Interim
rpoB 762266 c.2460T>C synonymous_variant 0.39 rifampicin
rpoB 762275 c.2469C>G synonymous_variant 0.39 rifampicin
rpoB 762293 c.2487T>G synonymous_variant 0.38 rifampicin
rpoB 762317 c.2511A>G synonymous_variant 0.32 rifampicin Not assoc w R - Interim
rpoB 762318 p.Ser838Asn missense_variant 0.32 rifampicin
rpoB 762329 c.2523G>C synonymous_variant 0.31 rifampicin Not assoc w R - Interim
rpoB 762335 c.2529C>T synonymous_variant 0.29 rifampicin
rpoB 762338 c.2532T>C synonymous_variant 0.27 rifampicin
rpoB 762341 c.2535G>C synonymous_variant 0.26 rifampicin
rpoB 762347 c.2541T>C synonymous_variant 0.3 rifampicin
rpoB 762350 c.2544C>G synonymous_variant 0.32 rifampicin
rpoB 762362 p.Glu852Asp missense_variant 0.31 rifampicin
rpoB 762796 p.Asp997Gly missense_variant 0.35 rifampicin
rpoB 762814 p.Met1003Thr missense_variant 0.39 rifampicin Uncertain significance
rpoB 762818 c.3012C>G synonymous_variant 0.43 rifampicin Not assoc w R - Interim
rpoC 762827 c.-543G>T upstream_gene_variant 0.52 rifampicin
rpoB 762831 c.3025_3026delAGinsTC synonymous_variant 0.52 rifampicin Not assoc w R - Interim
rpoB 762857 c.3051C>G synonymous_variant 0.67 rifampicin Not assoc w R - Interim
rpoB 762858 p.Thr1018Ser missense_variant 0.68 rifampicin
rpoC 762863 c.-507T>G upstream_gene_variant 0.7 rifampicin
rpoB 762881 p.Met1025Ile missense_variant 0.77 rifampicin
rpoB 762899 c.3093G>C synonymous_variant 0.81 rifampicin Not assoc w R - Interim
rpoC 762917 c.-453C>T upstream_gene_variant 0.76 rifampicin
rpoB 762920 c.3114C>T synonymous_variant 0.76 rifampicin Not assoc w R - Interim
rpoB 762923 c.3117C>G synonymous_variant 0.73 rifampicin Not assoc w R - Interim
rpoC 762926 c.-444C>G upstream_gene_variant 0.72 rifampicin
rpoB 762929 c.3123G>T synonymous_variant 0.75 rifampicin Not assoc w R - Interim
rpoC 762947 c.-423C>G upstream_gene_variant 0.77 rifampicin
rpoC 762956 c.-414G>C upstream_gene_variant 0.75 rifampicin
rpoB 762959 c.3153G>C synonymous_variant 0.73 rifampicin Not assoc w R - Interim
rpoC 762983 c.-387C>A upstream_gene_variant 0.71 rifampicin
rpoB 762989 c.3183G>T synonymous_variant 0.7 rifampicin Not assoc w R - Interim
rpoB 762995 c.3189G>T synonymous_variant 0.72 rifampicin Not assoc w R - Interim
rpoB 763031 c.3225T>C synonymous_variant 0.31 rifampicin Not assoc w R
rpoB 763031 c.3225T>G synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoB 763034 c.3228C>G synonymous_variant 0.7 rifampicin Not assoc w R - Interim
rpoB 763040 c.3234C>G synonymous_variant 0.72 rifampicin Not assoc w R - Interim
rpoC 763052 c.-318G>C upstream_gene_variant 0.68 rifampicin
rpoB 763053 c.3247T>C synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoB 763070 c.3264T>C synonymous_variant 0.68 rifampicin Not assoc w R - Interim
rpoB 763074 p.Thr1090Val missense_variant 0.67 rifampicin
rpoB 763082 c.3276C>T synonymous_variant 0.7 rifampicin Not assoc w R - Interim
rpoB 763094 c.3288G>C synonymous_variant 0.72 rifampicin Not assoc w R - Interim
rpoB 763115 c.3309T>C synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoB 763127 c.3321G>C synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoC 763133 c.-237G>C upstream_gene_variant 0.61 rifampicin
rpoB 763136 c.3330C>T synonymous_variant 0.58 rifampicin Not assoc w R - Interim
rpoC 763139 c.-231C>T upstream_gene_variant 0.6 rifampicin
rpoC 763148 c.-222G>C upstream_gene_variant 0.54 rifampicin
rpoC 763160 c.-210G>C upstream_gene_variant 0.42 rifampicin
rpoB 763166 c.3360A>G synonymous_variant 0.38 rifampicin Not assoc w R - Interim
rpoC 763169 c.-201A>G upstream_gene_variant 0.39 rifampicin
rpoB 763172 c.3366G>C synonymous_variant 0.4 rifampicin Not assoc w R - Interim
rpoC 763181 c.-189G>C upstream_gene_variant 0.31 rifampicin
rpoC 763375 c.6C>G synonymous_variant 0.28 rifampicin Not assoc w R - Interim
rpoC 763411 c.42T>C synonymous_variant 0.55 rifampicin
rpoC 763414 c.45T>G synonymous_variant 0.56 rifampicin Not assoc w R - Interim
rpoC 763423 p.Glu18Asp missense_variant 0.55 rifampicin Uncertain significance
rpoC 763430 c.61_63delAGGinsCGC synonymous_variant 0.53 rifampicin
rpoC 763433 p.Gln22Asn missense_variant 0.53 rifampicin
rpoC 763444 c.75T>C synonymous_variant 0.57 rifampicin Not assoc w R - Interim
rpoC 763456 c.87A>G synonymous_variant 0.59 rifampicin Not assoc w R - Interim
rpoC 763468 c.99G>C synonymous_variant 0.62 rifampicin Not assoc w R - Interim
rpoC 763486 c.117T>C synonymous_variant 0.66 rifampicin Not assoc w R - Interim
rpoC 763507 c.138G>C synonymous_variant 0.67 rifampicin
rpoC 763528 c.159G>A synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoC 763546 c.177A>G synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoC 763570 c.201G>C synonymous_variant 0.74 rifampicin Not assoc w R - Interim
rpoC 763603 c.234C>T synonymous_variant 0.76 rifampicin Not assoc w R - Interim
rpoC 763615 c.246G>C synonymous_variant 0.77 rifampicin Not assoc w R - Interim
rpoC 763618 c.249C>G synonymous_variant 0.78 rifampicin
rpoC 763642 c.273G>C synonymous_variant 0.76 rifampicin Not assoc w R - Interim
rpoC 763660 c.291T>G synonymous_variant 0.74 rifampicin Not assoc w R - Interim
rpoC 763666 c.297G>C synonymous_variant 0.74 rifampicin Not assoc w R - Interim
rpoC 763675 c.306C>G synonymous_variant 0.76 rifampicin Not assoc w R - Interim
rpoC 763702 c.333C>G synonymous_variant 0.73 rifampicin Not assoc w R - Interim
rpoC 763708 c.339G>T synonymous_variant 0.72 rifampicin
rpoC 763714 c.345G>C synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoC 763717 c.348T>C synonymous_variant 0.68 rifampicin Not assoc w R - Interim
rpoC 763723 c.354G>C synonymous_variant 0.7 rifampicin
rpoC 763732 c.363C>G synonymous_variant 0.66 rifampicin
rpoC 763741 c.372C>T synonymous_variant 0.62 rifampicin
rpoC 763744 c.375G>C synonymous_variant 0.61 rifampicin
rpoC 763765 c.396T>C synonymous_variant 0.63 rifampicin
rpoC 763774 c.405G>C synonymous_variant 0.61 rifampicin
rpoC 763781 p.Ser138Ala missense_variant 0.63 rifampicin
rpoC 763786 c.417C>G synonymous_variant 0.6 rifampicin
rpoC 763792 p.Glu141Asp missense_variant 0.56 rifampicin
rpoC 763796 p.Met143Leu missense_variant 0.55 rifampicin
rpoC 763807 c.438T>C synonymous_variant 0.51 rifampicin Not assoc w R - Interim
rpoC 763816 c.447C>G synonymous_variant 0.39 rifampicin
rpoC 763819 c.450G>C synonymous_variant 0.37 rifampicin
rpoC 763888 c.519G>C synonymous_variant 0.24 rifampicin
rpoC 763894 c.525A>G synonymous_variant 0.25 rifampicin
rpoC 763900 c.531G>C synonymous_variant 0.28 rifampicin Not assoc w R - Interim
rpoC 763910 p.Leu181Ile missense_variant 0.27 rifampicin
rpoC 763921 c.552G>C synonymous_variant 0.26 rifampicin
rpoC 763933 c.564C>T synonymous_variant 0.21 rifampicin Not assoc w R - Interim
rpoC 763940 p.Ala191Ser missense_variant 0.21 rifampicin Uncertain significance
rpoC 763945 c.576T>C synonymous_variant 0.21 rifampicin
rpoC 763947 p.Ala193Val missense_variant 0.21 rifampicin Uncertain significance
rpoC 763951 c.582G>T synonymous_variant 0.2 rifampicin
rpoC 763960 c.591T>C synonymous_variant 0.2 rifampicin Not assoc w R - Interim
rpoC 763961 p.Arg198Lys missense_variant 0.2 rifampicin
rpoC 763987 c.618C>T synonymous_variant 0.23 rifampicin
rpoC 763991 p.Ile208Leu missense_variant 0.25 rifampicin
rpoC 764020 c.651C>T synonymous_variant 0.39 rifampicin
rpoC 764023 c.654G>T synonymous_variant 0.38 rifampicin
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.38 rifampicin
rpoC 764032 p.Asp221Glu missense_variant 0.41 rifampicin
rpoC 764039 c.670_671delAGinsTC synonymous_variant 0.39 rifampicin
rpoC 764044 c.675T>C synonymous_variant 0.4 rifampicin
rpoC 764059 c.690G>A synonymous_variant 0.47 rifampicin
rpoC 764062 c.693C>G synonymous_variant 0.47 rifampicin
rpoC 764071 c.702G>C synonymous_variant 0.47 rifampicin
rpoC 764083 p.AsnLeu239LeuIle missense_variant 0.46 rifampicin
rpoC 764098 c.729A>G synonymous_variant 0.41 rifampicin Not assoc w R - Interim
rpoC 764101 c.732C>G synonymous_variant 0.4 rifampicin Not assoc w R - Interim
rpoC 764128 c.759C>G synonymous_variant 0.36 rifampicin
rpoC 764134 c.765C>G synonymous_variant 0.34 rifampicin Not assoc w R - Interim
rpoC 764149 c.780G>C synonymous_variant 0.34 rifampicin
rpoC 764161 c.792G>C synonymous_variant 0.33 rifampicin
rpoC 764164 p.Ile265Met missense_variant 0.33 rifampicin
rpoC 764169 p.Asn267Thr missense_variant 0.32 rifampicin
rpoC 764182 p.Asp271Glu missense_variant 0.34 rifampicin Uncertain significance
rpoC 764188 c.819A>G synonymous_variant 0.38 rifampicin Not assoc w R - Interim
rpoC 764203 c.834G>C synonymous_variant 0.39 rifampicin
rpoC 764206 p.Asp279Glu missense_variant 0.38 rifampicin
rpoC 764207 p.Val280Thr missense_variant 0.38 rifampicin Uncertain significance
rpoC 764215 c.846A>C synonymous_variant 0.38 rifampicin
rpoC 764217 p.Asn283Ser missense_variant 0.38 rifampicin
rpoC 764239 c.870T>C synonymous_variant 0.41 rifampicin
rpoC 764254 c.885G>T synonymous_variant 0.35 rifampicin Not assoc w R - Interim
rpoC 764257 c.888G>C synonymous_variant 0.33 rifampicin
rpoC 764263 c.894G>C synonymous_variant 0.3 rifampicin
rpoC 764266 c.897T>C synonymous_variant 0.31 rifampicin
rpoC 764269 c.900G>C synonymous_variant 0.31 rifampicin
rpoC 764275 c.909_911delACA disruptive_inframe_deletion 0.29 rifampicin
rpoC 764284 c.915delGinsCACC conservative_inframe_insertion&synonymous_variant 0.27 rifampicin
rpoC 764320 c.951C>G synonymous_variant 0.3 rifampicin
rpoC 764344 c.975C>T synonymous_variant 0.27 rifampicin
rpoC 764353 c.984G>C synonymous_variant 0.27 rifampicin
rpoC 764365 c.996C>T synonymous_variant 0.32 rifampicin Not assoc w R - Interim
rpoC 764371 c.1002G>C synonymous_variant 0.31 rifampicin Not assoc w R - Interim
rpoC 764380 c.1011G>C synonymous_variant 0.33 rifampicin Not assoc w R - Interim
rpoC 764383 c.1014C>G synonymous_variant 0.32 rifampicin
rpoC 764387 c.1018T>C synonymous_variant 0.34 rifampicin Not assoc w R - Interim
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.35 rifampicin Not assoc w R - Interim
rpoC 764410 c.1041G>C synonymous_variant 0.32 rifampicin
rpoC 764428 c.1059G>C synonymous_variant 0.26 rifampicin Not assoc w R - Interim
rpoC 764431 c.1062G>C synonymous_variant 0.26 rifampicin Not assoc w R - Interim
rpoC 764434 c.1065A>G synonymous_variant 0.26 rifampicin Not assoc w R - Interim
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.24 rifampicin
rpoC 764446 c.1077T>C synonymous_variant 0.27 rifampicin
rpoC 764449 c.1080G>C synonymous_variant 0.28 rifampicin
rpoC 764452 c.1083T>C synonymous_variant 0.29 rifampicin
rpoC 764455 c.1086G>A synonymous_variant 0.29 rifampicin
rpoC 764458 c.1089G>C synonymous_variant 0.3 rifampicin Not assoc w R - Interim
rpoC 764461 c.1092A>G synonymous_variant 0.34 rifampicin Not assoc w R - Interim
rpoC 764497 c.1128A>G synonymous_variant 0.44 rifampicin Not assoc w R - Interim
rpoC 764500 c.1131C>G synonymous_variant 0.41 rifampicin
rpoC 764503 c.1134G>C synonymous_variant 0.41 rifampicin
rpoC 764509 c.1140G>C synonymous_variant 0.44 rifampicin Not assoc w R - Interim
rpoC 764521 c.1152T>C synonymous_variant 0.41 rifampicin Not assoc w R - Interim
rpoC 764524 c.1155C>T synonymous_variant 0.42 rifampicin
rpoC 764527 c.1158C>T synonymous_variant 0.41 rifampicin Not assoc w R - Interim
rpoC 764530 c.1161C>T synonymous_variant 0.41 rifampicin Not assoc w R - Interim
rpoC 764536 c.1167G>C synonymous_variant 0.41 rifampicin
rpoC 764539 c.1170C>G synonymous_variant 0.44 rifampicin Not assoc w R - Interim
rpoC 764560 c.1191T>C synonymous_variant 0.55 rifampicin Not assoc w R - Interim
rpoC 764566 c.1197C>G synonymous_variant 0.57 rifampicin Not assoc w R - Interim
rpoC 764575 c.1206T>C synonymous_variant 0.56 rifampicin
rpoC 764578 c.1209C>G synonymous_variant 0.58 rifampicin
rpoC 764602 c.1233C>T synonymous_variant 0.62 rifampicin
rpoC 764605 c.1236G>C synonymous_variant 0.61 rifampicin Not assoc w R - Interim
rpoC 764611 c.1242G>T synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoC 764623 c.1254C>G synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoC 764632 c.1263T>C synonymous_variant 0.63 rifampicin Not assoc w R - Interim
rpoC 764650 c.1281G>T synonymous_variant 0.68 rifampicin Not assoc w R - Interim
rpoC 764662 c.1293G>C synonymous_variant 0.71 rifampicin Not assoc w R - Interim
rpoC 764701 c.1332C>G synonymous_variant 0.7 rifampicin Not assoc w R - Interim
rpoC 764707 c.1338G>C synonymous_variant 0.67 rifampicin Not assoc w R - Interim
rpoC 764713 c.1344G>T synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoC 764716 c.1347G>C synonymous_variant 0.64 rifampicin Not assoc w R - Interim
rpoC 764746 c.1377G>T synonymous_variant 0.65 rifampicin Not assoc w R - Interim
rpoC 764755 c.1386C>T synonymous_variant 0.6 rifampicin
rpoC 764764 c.1395T>C synonymous_variant 0.6 rifampicin Not assoc w R - Interim
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.53 rifampicin
rpoC 764797 c.1428G>C synonymous_variant 0.48 rifampicin
rpoC 764803 c.1434C>T synonymous_variant 0.46 rifampicin Not assoc w R - Interim
rpoC 764809 c.1440C>T synonymous_variant 0.45 rifampicin Not assoc w R
rpoC 764810 p.Pro481Ala missense_variant 0.45 rifampicin Uncertain significance
rpoC 764815 c.1446A>G synonymous_variant 0.48 rifampicin Not assoc w R - Interim
rpoC 764824 c.1455T>C synonymous_variant 0.47 rifampicin Not assoc w R - Interim
rpoC 764827 c.1458G>C synonymous_variant 0.45 rifampicin Not assoc w R - Interim
rpoC 764844 p.Ala492Gly missense_variant 0.42 rifampicin
rpoC 764872 c.1503A>C synonymous_variant 0.24 rifampicin
rpoC 764878 c.1509C>G synonymous_variant 0.27 rifampicin
rpoC 764887 c.1518G>T synonymous_variant 0.25 rifampicin
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.25 rifampicin
rpoC 764893 c.1524T>C synonymous_variant 0.27 rifampicin
rpoC 764902 c.1533C>G synonymous_variant 0.24 rifampicin
rpoC 764911 c.1542A>G synonymous_variant 0.29 rifampicin
rpoC 764912 p.Met515Gln missense_variant 0.29 rifampicin Uncertain significance
rpoC 764917 c.1548G>C synonymous_variant 0.29 rifampicin
rpoC 764920 c.1551G>C synonymous_variant 0.3 rifampicin
rpoC 764923 c.1554A>G synonymous_variant 0.3 rifampicin Not assoc w R - Interim
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.25 rifampicin Not assoc w R - Interim
rpoC 764953 c.1584G>C synonymous_variant 0.25 rifampicin
rpoC 764956 c.1587T>C synonymous_variant 0.28 rifampicin
rpoC 764968 c.1599T>C synonymous_variant 0.25 rifampicin Not assoc w R - Interim
rpoC 765007 c.1638T>G synonymous_variant 0.24 rifampicin Not assoc w R - Interim
rpoC 765008 c.1639T>C synonymous_variant 0.24 rifampicin Not assoc w R - Interim
rpoC 765011 c.1642_1644delAGCinsTCG synonymous_variant 0.24 rifampicin
rpoC 765016 c.1647C>G synonymous_variant 0.24 rifampicin
rpoC 765019 c.1650A>G synonymous_variant 0.24 rifampicin Not assoc w R - Interim
rpoC 765034 c.1665T>C synonymous_variant 0.31 rifampicin
rpoC 765038 p.Ile557Val missense_variant 0.31 rifampicin
rpoC 765041 c.1672T>C synonymous_variant 0.31 rifampicin Not assoc w R - Interim
rpoC 765047 c.1678T>C synonymous_variant 0.29 rifampicin Not assoc w R - Interim
rpoC 765052 c.1683C>G synonymous_variant 0.29 rifampicin Not assoc w R - Interim
rpoC 765055 c.1686C>G synonymous_variant 0.29 rifampicin Not assoc w R - Interim
rpoC 765076 c.1707A>G synonymous_variant 0.27 rifampicin
rpoC 765079 c.1710T>G synonymous_variant 0.23 rifampicin Not assoc w R - Interim
rpoC 765082 c.1713G>C synonymous_variant 0.23 rifampicin Not assoc w R - Interim
rpoC 765089 c.1720_1722delTTGinsCTC synonymous_variant 0.19 rifampicin
rpoC 765928 c.2559C>G synonymous_variant 0.21 rifampicin Not assoc w R - Interim
rpoC 765934 c.2565C>T synonymous_variant 0.21 rifampicin
rpoC 765937 c.2568T>C synonymous_variant 0.21 rifampicin Not assoc w R - Interim
rpoC 765940 c.2571A>T synonymous_variant 0.19 rifampicin Not assoc w R - Interim
rpoC 765946 c.2577C>A synonymous_variant 0.2 rifampicin Not assoc w R - Interim
rpoC 765947 c.2578T>C synonymous_variant 0.2 rifampicin Not assoc w R - Interim
rpoC 765952 c.2583G>C synonymous_variant 0.19 rifampicin
rpoC 766280 p.Ser971Gly missense_variant 0.21 rifampicin
rpoC 766285 c.2916C>G synonymous_variant 0.24 rifampicin
rpoC 766291 c.2922G>C synonymous_variant 0.34 rifampicin
rpoC 766297 c.2928G>C synonymous_variant 0.36 rifampicin
rpoC 766309 c.2940G>C synonymous_variant 0.44 rifampicin Not assoc w R - Interim
rpoC 766312 c.2943T>C synonymous_variant 0.45 rifampicin
rpoC 766315 c.2946C>G synonymous_variant 0.45 rifampicin
rpoC 766345 c.2976T>C synonymous_variant 0.6 rifampicin
rpoC 766348 c.2979A>G synonymous_variant 0.61 rifampicin Not assoc w R - Interim
rpoC 766363 c.2994G>C synonymous_variant 0.67 rifampicin
rpoC 766381 c.3012C>T synonymous_variant 0.69 rifampicin
rpoC 766384 c.3015A>G synonymous_variant 0.7 rifampicin
rpoC 766393 c.3024C>G synonymous_variant 0.71 rifampicin
rpoC 766408 c.3039C>T synonymous_variant 0.71 rifampicin Not assoc w R - Interim
rpoC 766426 c.3057C>T synonymous_variant 0.67 rifampicin
rpoC 766428 c.3059_3060insGGC disruptive_inframe_insertion 0.65 rifampicin
rpoC 766432 c.3063T>C synonymous_variant 0.65 rifampicin
rpoC 766435 p.Glu1022Asp missense_variant 0.68 rifampicin Uncertain significance
rpoC 766459 c.3090G>C synonymous_variant 0.5 rifampicin
rpoC 766978 c.3609C>A synonymous_variant 0.4 rifampicin
rpoC 766996 c.3627C>T synonymous_variant 0.39 rifampicin Not assoc w R - Interim
rpoC 767002 c.3633G>C synonymous_variant 0.41 rifampicin Not assoc w R - Interim
rpoC 767008 c.3639G>A synonymous_variant 0.49 rifampicin Not assoc w R - Interim
rpoC 767017 c.3648C>G synonymous_variant 0.59 rifampicin
rpoC 767035 c.3666G>C synonymous_variant 0.56 rifampicin Not assoc w R - Interim
rpoC 767062 c.3693C>T synonymous_variant 0.63 rifampicin
rpoC 767074 c.3705T>C synonymous_variant 0.64 rifampicin
rpoC 767093 c.3724_3726delAGCinsTCG synonymous_variant 0.58 rifampicin
rpoC 767098 c.3729T>C synonymous_variant 0.58 rifampicin Not assoc w R - Interim
rpoC 767104 c.3735C>G synonymous_variant 0.58 rifampicin Not assoc w R - Interim
rpoC 767106 p.Asn1246Ile missense_variant 0.58 rifampicin
rpoC 767113 c.3744G>C synonymous_variant 0.6 rifampicin
rpoC 767119 c.3750A>G synonymous_variant 0.6 rifampicin Not assoc w R - Interim
rpoC 767152 c.3783T>C synonymous_variant 0.61 rifampicin Not assoc w R - Interim
rpoC 767158 c.3789T>C synonymous_variant 0.62 rifampicin Not assoc w R - Interim
rpoC 767167 c.3798C>G synonymous_variant 0.56 rifampicin Not assoc w R - Interim
rpoC 767173 c.3804C>G synonymous_variant 0.57 rifampicin
rpoC 767180 p.Ala1271Thr missense_variant 0.55 rifampicin
rpoC 767203 c.3834C>A synonymous_variant 0.42 rifampicin
rpoC 767206 c.3837C>G synonymous_variant 0.42 rifampicin Not assoc w R - Interim
rpoC 767209 c.3840T>C synonymous_variant 0.41 rifampicin Not assoc w R - Interim
rpoC 767215 c.3846G>C synonymous_variant 0.41 rifampicin
rpoC 767219 p.Thr1284Ala missense_variant 0.41 rifampicin Uncertain significance
rpoC 767222 p.Ile1285Val missense_variant 0.43 rifampicin
rpoC 767233 c.3864T>C synonymous_variant 0.44 rifampicin Not assoc w R - Interim
rpoC 767236 p.Glu1289Asp missense_variant 0.43 rifampicin
mmpL5 776100 p.Thr794Ile missense_variant 1.0 bedaquiline Not assoc w R - Interim
clofazimine Not assoc w R
mmpL5 776182 p.Asp767Asn missense_variant 1.0 bedaquiline Not assoc w R
clofazimine Not assoc w R
mmpR5 779063 p.Gly25Asp missense_variant 1.0 bedaquiline Uncertain significance
clofazimine Uncertain significance
rpsL 781395 c.-165T>C upstream_gene_variant 1.0 streptomycin Not assoc w R
rpsL 781679 c.120C>G synonymous_variant 0.36 streptomycin
rpsL 781682 c.123T>G synonymous_variant 0.38 streptomycin
rpsL 781685 c.126G>C synonymous_variant 0.38 streptomycin
rpsL 781703 c.144G>A synonymous_variant 0.38 streptomycin
rpsL 781706 c.147T>C synonymous_variant 0.38 streptomycin
rpsL 781709 c.150G>T synonymous_variant 0.38 streptomycin
rpsL 781715 c.156T>C synonymous_variant 0.38 streptomycin
rpsL 781718 c.159C>G synonymous_variant 0.38 streptomycin
rpsL 781725 p.Lys56Arg missense_variant 0.41 streptomycin
rpsL 781733 c.174G>C synonymous_variant 0.43 streptomycin
rpsL 781736 c.177T>C synonymous_variant 0.43 streptomycin
rpsL 781737 p.Gln60Ala missense_variant 0.43 streptomycin
rpsL 781760 c.201T>C synonymous_variant 0.65 streptomycin
rpsL 781766 c.207C>T synonymous_variant 0.66 streptomycin Not assoc w R - Interim
rpsL 781772 c.213C>T synonymous_variant 0.67 streptomycin Not assoc w R - Interim
rpsL 781802 c.243G>C synonymous_variant 0.7 streptomycin
rpsL 781805 c.246G>C synonymous_variant 0.72 streptomycin
rpsL 781811 c.252C>T synonymous_variant 0.72 streptomycin
rpsL 781814 c.255C>T synonymous_variant 0.74 streptomycin
rpsL 781817 c.258G>T synonymous_variant 0.71 streptomycin
rpsL 781829 c.270G>C synonymous_variant 0.74 streptomycin
rpsL 781832 c.273T>G synonymous_variant 0.74 streptomycin
rpsL 781838 c.279G>T synonymous_variant 0.72 streptomycin
rpsL 781841 c.282C>G synonymous_variant 0.71 streptomycin
rpsL 781859 c.300T>C synonymous_variant 0.72 streptomycin Not assoc w R - Interim
rpsL 781865 c.306G>C synonymous_variant 0.71 streptomycin
rpsL 781868 c.309T>C synonymous_variant 0.7 streptomycin
rpsL 781871 c.312G>C synonymous_variant 0.71 streptomycin
rpsL 781892 c.333A>G synonymous_variant 0.67 streptomycin
rpsL 781898 c.339A>T synonymous_variant 0.64 streptomycin
rpsL 781901 c.342C>T synonymous_variant 0.58 streptomycin
rpsL 781907 c.348T>C synonymous_variant 0.58 streptomycin
rpsL 781916 c.357T>G synonymous_variant 0.51 streptomycin
rpsL 781929 p.Gly124Ser missense_variant 0.44 streptomycin Uncertain significance
Rv1129c 1254562 c.-28T>C upstream_gene_variant 1.0 levofloxacin Not assoc w R
moxifloxacin Not assoc w R
isoniazid Not assoc w R
rifampicin Not assoc w R
fbiC 1303488 c.558G>T synonymous_variant 0.24 pretomanid
delamanid
clofazimine
fbiC 1303503 c.573G>C synonymous_variant 0.21 pretomanid
delamanid
clofazimine
fbiC 1303516 p.Met196Leu missense_variant 0.2 pretomanid
delamanid
clofazimine
fbiC 1303521 c.591C>T synonymous_variant 0.21 pretomanid
delamanid
clofazimine
fbiC 1303525 p.Ser199Glu missense_variant 0.19 pretomanid
delamanid
clofazimine
fbiC 1303533 p.Met201Ile missense_variant 0.21 pretomanid
delamanid
clofazimine
fbiC 1303545 c.615A>G synonymous_variant 0.21 pretomanid
delamanid
clofazimine
fbiC 1303548 c.618G>C synonymous_variant 0.2 pretomanid
delamanid
clofazimine
fbiC 1303575 c.645G>C synonymous_variant 0.17 pretomanid
delamanid
clofazimine
fbiC 1303584 c.654C>G synonymous_variant 0.2 pretomanid
delamanid
clofazimine
fbiC 1303590 c.660A>T synonymous_variant 0.16 pretomanid
delamanid
clofazimine
fbiC 1304718 c.1788C>G synonymous_variant 0.2 pretomanid
delamanid
clofazimine
fbiC 1304724 c.1794A>G synonymous_variant 0.2 pretomanid
delamanid Not assoc w R - Interim
clofazimine Not assoc w R - Interim
fbiC 1304727 c.1797A>G synonymous_variant 0.2 pretomanid
delamanid
clofazimine
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0 streptomycin Uncertain significance
pyrazinamide Uncertain significance
isoniazid Uncertain significance
rrs 1471659 n.-187C>T upstream_gene_variant 1.0 kanamycin
capreomycin
streptomycin
amikacin
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.78 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.8 kanamycin
capreomycin
streptomycin
amikacin
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.8 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.82 kanamycin
capreomycin
streptomycin
amikacin
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.81 kanamycin
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.78 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1471997 n.152T>C non_coding_transcript_exon_variant 0.82 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472027 n.182C>T non_coding_transcript_exon_variant 0.71 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472028 n.183A>G non_coding_transcript_exon_variant 0.71 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.71 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.71 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.72 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.72 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.73 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472057 n.212C>A non_coding_transcript_exon_variant 0.73 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.76 kanamycin
capreomycin
streptomycin Uncertain significance
amikacin
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.79 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.8 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.84 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.86 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.86 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.9 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.9 kanamycin Uncertain significance
capreomycin Not assoc w R
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Not assoc w R
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.85 kanamycin Uncertain significance
capreomycin Not assoc w R
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.75 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.73 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.73 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.77 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472313 n.468delGinsCA non_coding_transcript_exon_variant 0.78 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.78 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.85 kanamycin
capreomycin
streptomycin Uncertain significance
amikacin
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.86 kanamycin
capreomycin
streptomycin Uncertain significance
amikacin
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.85 kanamycin
capreomycin
streptomycin Uncertain significance
amikacin
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.47 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.67 kanamycin Uncertain significance
capreomycin Not assoc w R
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.64 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.64 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.64 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.64 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.65 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472449 n.604C>A non_coding_transcript_exon_variant 0.66 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.66 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.67 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.7 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472463 n.618G>T non_coding_transcript_exon_variant 0.69 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.69 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.73 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.75 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.87 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472495 n.650C>T non_coding_transcript_exon_variant 0.88 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472497 n.652G>T non_coding_transcript_exon_variant 0.89 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472580 n.735C>A non_coding_transcript_exon_variant 0.94 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472582 n.737G>A non_coding_transcript_exon_variant 0.93 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.94 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.96 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.96 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.96 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.96 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.95 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.95 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472720 n.875C>G non_coding_transcript_exon_variant 0.26 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.46 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.35 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472844 n.999_1004delCGCGTCinsAAGCCG non_coding_transcript_exon_variant 0.33 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472851 n.1006A>G non_coding_transcript_exon_variant 0.33 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472856 n.1011T>C non_coding_transcript_exon_variant 0.34 kanamycin Uncertain significance
capreomycin
streptomycin
amikacin Uncertain significance
rrs 1472858 n.1013G>C non_coding_transcript_exon_variant 0.34 kanamycin
capreomycin
streptomycin
amikacin
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.35 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472861 n.1016G>C non_coding_transcript_exon_variant 0.36 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472862 n.1017T>C non_coding_transcript_exon_variant 0.38 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472863 n.1018T>C non_coding_transcript_exon_variant 0.5 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.68 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.68 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.75 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.88 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.88 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.88 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.89 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.89 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.89 kanamycin Not assoc w R
capreomycin Not assoc w R
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.89 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.89 kanamycin Uncertain significance
capreomycin Not assoc w R
streptomycin Uncertain significance
amikacin Not assoc w R
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.9 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.92 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.91 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin
amikacin Uncertain significance
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.91 kanamycin
capreomycin
streptomycin
amikacin
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.9 kanamycin Uncertain significance
capreomycin Uncertain significance
streptomycin Uncertain significance
amikacin Uncertain significance
rrl 1473668 n.11C>G non_coding_transcript_exon_variant 0.51 capreomycin
linezolid
rrl 1473673 n.16G>A non_coding_transcript_exon_variant 0.54 capreomycin
linezolid
rrl 1473677 n.20C>T non_coding_transcript_exon_variant 0.51 capreomycin
linezolid
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.53 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.67 capreomycin Uncertain significance
linezolid
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.67 capreomycin
linezolid
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.68 capreomycin Uncertain significance
linezolid
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.85 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473758 n.101G>A non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.9 capreomycin
linezolid
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.92 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.92 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.85 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.6 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473928 n.271T>C non_coding_transcript_exon_variant 0.51 capreomycin
linezolid Uncertain significance
rrl 1474116 n.459G>A non_coding_transcript_exon_variant 0.26 capreomycin
linezolid
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.77 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.85 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 0.85 capreomycin
linezolid
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.77 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.33 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.32 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.29 capreomycin
linezolid
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.32 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.41 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.4 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.32 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.35 capreomycin
linezolid
rrl 1474450 n.793T>C non_coding_transcript_exon_variant 0.46 capreomycin
linezolid
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.94 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.92 capreomycin
linezolid
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.69 capreomycin Uncertain significance
linezolid
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.64 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.64 capreomycin Uncertain significance
linezolid
rrl 1474662 n.1005C>T non_coding_transcript_exon_variant 0.27 capreomycin
linezolid
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.61 capreomycin
linezolid
rrl 1474710 n.1053T>G non_coding_transcript_exon_variant 0.61 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474712 n.1055G>A non_coding_transcript_exon_variant 0.65 capreomycin
linezolid
rrl 1474716 n.1059_1060delAAinsGAG non_coding_transcript_exon_variant 0.67 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474740 n.1083G>C non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 0.85 capreomycin
linezolid
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.85 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.92 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474823 n.1166C>A non_coding_transcript_exon_variant 0.92 capreomycin
linezolid
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474904 n.1247G>T non_coding_transcript_exon_variant 0.91 capreomycin
linezolid
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.7 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.72 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.72 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.74 capreomycin
linezolid
rrl 1475201 n.1544G>C non_coding_transcript_exon_variant 0.72 capreomycin
linezolid
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.72 capreomycin Uncertain significance
linezolid
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.72 capreomycin Uncertain significance
linezolid
rrl 1475221 n.1564C>G non_coding_transcript_exon_variant 0.52 capreomycin
linezolid
rrl 1475222 n.1565G>A non_coding_transcript_exon_variant 0.46 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475406 n.1749T>G non_coding_transcript_exon_variant 0.3 capreomycin
linezolid
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.59 capreomycin Uncertain significance
linezolid
rrl 1475422 n.1765A>G non_coding_transcript_exon_variant 0.6 capreomycin
linezolid
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.61 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475430 n.1773T>A non_coding_transcript_exon_variant 0.61 capreomycin
linezolid
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.8 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.8 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance
linezolid
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475482 n.1825A>G non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.74 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.66 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.77 capreomycin
linezolid
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.78 capreomycin
linezolid
rrl 1475761 n.2104_2108delCGCAAinsACTTCG non_coding_transcript_exon_variant 0.79 capreomycin
linezolid
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.78 capreomycin
linezolid
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.81 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.86 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.69 capreomycin Uncertain significance
linezolid
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.69 capreomycin
linezolid
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.68 capreomycin Uncertain significance
linezolid
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.68 capreomycin Uncertain significance
linezolid
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.67 capreomycin Uncertain significance
linezolid
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.67 capreomycin Uncertain significance
linezolid
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.66 capreomycin
linezolid
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.66 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.72 capreomycin
linezolid
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.72 capreomycin
linezolid
rrl 1476091 n.2434_2435insC non_coding_transcript_exon_variant 0.75 capreomycin
linezolid
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.75 capreomycin
linezolid
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.8 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.89 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.89 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.89 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.9 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.91 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.91 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476524 n.2867delCinsGA non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.81 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.8 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.82 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476608 n.2951C>T non_coding_transcript_exon_variant 0.8 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.8 capreomycin
linezolid
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.78 capreomycin
linezolid
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.78 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.69 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.64 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.64 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.63 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476689 n.3032A>C non_coding_transcript_exon_variant 0.24 capreomycin
linezolid
rpsA 1833676 c.135A>G synonymous_variant 0.67 pyrazinamide
rpsA 1833679 c.138G>C synonymous_variant 0.66 pyrazinamide
rpsA 1833685 c.144G>C synonymous_variant 0.68 pyrazinamide
rpsA 1833694 c.153G>C synonymous_variant 0.62 pyrazinamide
rpsA 1833697 c.156C>G synonymous_variant 0.64 pyrazinamide
rpsA 1833709 c.168C>T synonymous_variant 0.68 pyrazinamide
rpsA 1833727 c.186G>C synonymous_variant 0.7 pyrazinamide
rpsA 1833734 p.Ala65Ser missense_variant 0.71 pyrazinamide
rpsA 1833742 c.201A>G synonymous_variant 0.74 pyrazinamide
rpsA 1833745 c.204G>C synonymous_variant 0.76 pyrazinamide
rpsA 1833749 p.Ile70Leu missense_variant 0.24 pyrazinamide Not assoc w R
rpsA 1833781 c.240T>C synonymous_variant 0.71 pyrazinamide
rpsA 1833787 c.246C>G synonymous_variant 0.73 pyrazinamide
rpsA 1833790 c.249T>C synonymous_variant 0.73 pyrazinamide
rpsA 1833793 c.252C>T synonymous_variant 0.73 pyrazinamide
rpsA 1833805 c.264C>T synonymous_variant 0.72 pyrazinamide
rpsA 1833808 c.267G>C synonymous_variant 0.71 pyrazinamide
rpsA 1833811 c.270G>C synonymous_variant 0.71 pyrazinamide
rpsA 1833829 c.288A>G synonymous_variant 0.69 pyrazinamide
rpsA 1833835 c.294C>T synonymous_variant 0.66 pyrazinamide
rpsA 1833838 c.297G>A synonymous_variant 0.65 pyrazinamide
rpsA 1833841 c.300C>G synonymous_variant 0.66 pyrazinamide
rpsA 1833847 c.306C>G synonymous_variant 0.7 pyrazinamide
rpsA 1833850 c.309C>G synonymous_variant 0.69 pyrazinamide
rpsA 1833856 c.315A>G synonymous_variant 0.71 pyrazinamide
rpsA 1833862 c.321G>T synonymous_variant 0.7 pyrazinamide
rpsA 1833894 p.Ala118Glu missense_variant 0.75 pyrazinamide
rpsA 1833928 c.387G>C synonymous_variant 0.77 pyrazinamide
rpsA 1833955 c.414G>C synonymous_variant 0.83 pyrazinamide
rpsA 1833970 c.429G>C synonymous_variant 0.8 pyrazinamide
rpsA 1833973 c.432G>C synonymous_variant 0.79 pyrazinamide
rpsA 1833979 c.438T>C synonymous_variant 0.79 pyrazinamide
rpsA 1833985 c.444G>C synonymous_variant 0.79 pyrazinamide
rpsA 1833991 c.450C>G synonymous_variant 0.81 pyrazinamide
rpsA 1833997 c.456G>C synonymous_variant 0.78 pyrazinamide
rpsA 1834000 c.459G>C synonymous_variant 0.76 pyrazinamide
rpsA 1834009 c.468C>T synonymous_variant 0.76 pyrazinamide
rpsA 1834012 c.471G>C synonymous_variant 0.75 pyrazinamide
rpsA 1834015 c.474G>C synonymous_variant 0.75 pyrazinamide
rpsA 1834021 c.480C>T synonymous_variant 0.79 pyrazinamide
rpsA 1834030 c.489C>G synonymous_variant 0.81 pyrazinamide
rpsA 1834034 p.Ile165Val missense_variant 0.8 pyrazinamide
rpsA 1834054 c.513C>G synonymous_variant 0.78 pyrazinamide
rpsA 1834069 c.528G>C synonymous_variant 0.74 pyrazinamide
rpsA 1834093 c.552G>C synonymous_variant 0.65 pyrazinamide
rpsA 1834099 c.558C>G synonymous_variant 0.65 pyrazinamide
rpsA 1834108 c.567C>A synonymous_variant 0.62 pyrazinamide
rpsA 1834114 c.573G>C synonymous_variant 0.57 pyrazinamide
rpsA 1834135 c.594G>C synonymous_variant 0.57 pyrazinamide
rpsA 1834151 p.Asn204His missense_variant 0.41 pyrazinamide
rpsA 1834154 p.Asn205Gln missense_variant 0.37 pyrazinamide
rpsA 1834157 c.616T>C synonymous_variant 0.37 pyrazinamide
rpsA 1834162 c.621A>G synonymous_variant 0.37 pyrazinamide Not assoc w R - Interim
rpsA 1834165 c.624A>G synonymous_variant 0.37 pyrazinamide
rpsA 1834167 c.628_629delAC frameshift_variant 0.38 pyrazinamide Uncertain significance
rpsA 1834172 c.631_632insGG frameshift_variant 0.37 pyrazinamide Uncertain significance
rpsA 1834177 c.636A>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim
rpsA 1834183 c.642T>C synonymous_variant 0.42 pyrazinamide Not assoc w R - Interim
rpsA 1834210 c.669C>T synonymous_variant 0.58 pyrazinamide
rpsA 1834231 c.690T>C synonymous_variant 0.61 pyrazinamide
rpsA 1834234 c.693G>C synonymous_variant 0.65 pyrazinamide
rpsA 1834246 c.705G>C synonymous_variant 0.69 pyrazinamide
rpsA 1834249 c.708T>C synonymous_variant 0.71 pyrazinamide
rpsA 1834261 c.720A>C synonymous_variant 0.67 pyrazinamide
rpsA 1834264 c.723G>C synonymous_variant 0.71 pyrazinamide
rpsA 1834279 c.738C>T synonymous_variant 0.7 pyrazinamide Not assoc w R - Interim
rpsA 1834294 c.753G>C synonymous_variant 0.71 pyrazinamide
rpsA 1834298 p.Gln253Glu missense_variant 0.7 pyrazinamide
rpsA 1834303 c.762T>C synonymous_variant 0.67 pyrazinamide
rpsA 1834306 c.765T>C synonymous_variant 0.62 pyrazinamide
rpsA 1834307 p.Asp256Thr missense_variant 0.62 pyrazinamide
rpsA 1834327 c.786G>T synonymous_variant 0.63 pyrazinamide
rpsA 1834340 p.Met267Leu missense_variant 0.52 pyrazinamide Uncertain significance
rpsA 1834348 c.807T>C synonymous_variant 0.5 pyrazinamide Not assoc w R - Interim
rpsA 1834354 c.813G>C synonymous_variant 0.47 pyrazinamide Not assoc w R - Interim
rpsA 1834357 c.816T>C synonymous_variant 0.47 pyrazinamide
rpsA 1834360 c.819G>C synonymous_variant 0.44 pyrazinamide
rpsA 1834361 c.820_822delTTGinsCTC synonymous_variant 0.44 pyrazinamide
rpsA 1834366 c.825A>G synonymous_variant 0.47 pyrazinamide Not assoc w R - Interim
rpsA 1834378 c.837T>G synonymous_variant 0.5 pyrazinamide
rpsA 1834396 c.855G>T synonymous_variant 0.51 pyrazinamide
rpsA 1834399 p.His286Gln missense_variant 0.51 pyrazinamide
rpsA 1834411 c.870T>C synonymous_variant 0.56 pyrazinamide
rpsA 1834423 c.882G>T synonymous_variant 0.61 pyrazinamide
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.57 pyrazinamide
rpsA 1834465 c.924T>C synonymous_variant 0.62 pyrazinamide
rpsA 1834468 c.927A>C synonymous_variant 0.64 pyrazinamide
rpsA 1834489 c.948T>C synonymous_variant 0.66 pyrazinamide
rpsA 1834528 c.987T>C synonymous_variant 0.69 pyrazinamide
rpsA 1834534 c.993C>G synonymous_variant 0.66 pyrazinamide
rpsA 1834540 c.999G>T synonymous_variant 0.59 pyrazinamide Not assoc w R - Interim
rpsA 1834543 c.1002C>G synonymous_variant 0.59 pyrazinamide
rpsA 1834546 c.1005T>C synonymous_variant 0.59 pyrazinamide
rpsA 1834552 c.1011G>C synonymous_variant 0.57 pyrazinamide
rpsA 1834555 c.1014T>C synonymous_variant 0.55 pyrazinamide
rpsA 1834556 p.Ala339Thr missense_variant 0.55 pyrazinamide Uncertain significance
rpsA 1834573 c.1032G>A synonymous_variant 0.51 pyrazinamide
rpsA 1834574 p.Met345Leu missense_variant 0.51 pyrazinamide
rpsA 1834600 c.1059G>C synonymous_variant 0.36 pyrazinamide
rpsA 1834606 c.1065C>T synonymous_variant 0.32 pyrazinamide
rpsA 1834609 c.1068T>C synonymous_variant 0.31 pyrazinamide
rpsA 1834612 c.1071G>C synonymous_variant 0.34 pyrazinamide
rpsA 1834619 c.1078T>C synonymous_variant 0.38 pyrazinamide
rpsA 1834627 c.1086C>G synonymous_variant 0.42 pyrazinamide
rpsA 1834633 c.1092A>G synonymous_variant 0.38 pyrazinamide
rpsA 1834639 c.1098T>C synonymous_variant 0.41 pyrazinamide
rpsA 1834650 p.Thr370Ser missense_variant 0.4 pyrazinamide
rpsA 1834653 p.Glu371Ala missense_variant 0.39 pyrazinamide
rpsA 1834663 c.1122C>T synonymous_variant 0.41 pyrazinamide
rpsA 1834667 p.Ala376Ser missense_variant 0.41 pyrazinamide
rpsA 1834688 c.1147_1149delAGTinsTCG synonymous_variant 0.46 pyrazinamide
rpsA 1834699 p.Glu386Asp missense_variant 0.53 pyrazinamide
rpsA 1834712 p.Ile391Val missense_variant 0.53 pyrazinamide Uncertain significance
rpsA 1834732 c.1191T>C synonymous_variant 0.5 pyrazinamide
rpsA 1834733 p.Ala398Ser missense_variant 0.5 pyrazinamide
rpsA 1834738 c.1197A>G synonymous_variant 0.5 pyrazinamide
rpsA 1834753 c.1212T>C synonymous_variant 0.4 pyrazinamide
rpsA 1834759 c.1218A>G synonymous_variant 0.4 pyrazinamide
rpsA 1834761 p.Phe407Tyr missense_variant 0.37 pyrazinamide
rpsA 1834765 p.Glu408Asp missense_variant 0.34 pyrazinamide
rpsA 1834774 c.1233C>T synonymous_variant 0.32 pyrazinamide
rpsA 1834776 p.Ala412Glu missense_variant 0.31 pyrazinamide
rpsA 1834780 c.1239A>G synonymous_variant 0.31 pyrazinamide
rpsA 1834788 p.Ala416Gly missense_variant 0.31 pyrazinamide
rpsA 1834810 c.1269C>T synonymous_variant 0.24 pyrazinamide
rpsA 1834813 c.1272G>T synonymous_variant 0.23 pyrazinamide
katG 2154724 p.Arg463Leu missense_variant 1.0 isoniazid Not assoc w R
katG 2155186 c.917_925delCCGGAACCG disruptive_inframe_deletion 1.0 isoniazid
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0 bedaquiline Not assoc w R - Interim
clofazimine Not assoc w R
kasA 2517950 c.-165C>G upstream_gene_variant 0.47 isoniazid
kasA 2517965 c.-150C>G upstream_gene_variant 0.37 isoniazid
kasA 2517974 c.-141T>C upstream_gene_variant 0.37 isoniazid
kasA 2517988 c.-127_-126delTTinsCC upstream_gene_variant 0.31 isoniazid
kasA 2517992 c.-123C>G upstream_gene_variant 0.29 isoniazid
kasA 2517993 c.-122G>T upstream_gene_variant 0.29 isoniazid
eis 2714526 c.805_806delAC frameshift_variant 1.0 kanamycin Uncertain significance
amikacin Uncertain significance
Rv2477c 2782528 c.1515G>C synonymous_variant 0.25 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782531 c.1512C>G synonymous_variant 0.31 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782537 c.1506T>C synonymous_variant 0.33 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782540 c.1503T>C synonymous_variant 0.37 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782558 c.1485T>C synonymous_variant 0.46 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782561 c.1482G>C synonymous_variant 0.46 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782582 p.Asn487Glu missense_variant 0.44 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782586 p.Leu486Gln missense_variant 0.44 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782591 c.1452T>C synonymous_variant 0.43 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782594 c.1449T>C synonymous_variant 0.44 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782603 c.1440G>A synonymous_variant 0.45 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782606 c.1437T>G synonymous_variant 0.46 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782612 c.1431T>G synonymous_variant 0.46 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782621 c.1422T>C synonymous_variant 0.45 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin Not assoc w R - Interim
ethambutol Not assoc w R - Interim
amikacin
Rv2477c 2782624 c.1419G>C synonymous_variant 0.44 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782633 c.1410G>C synonymous_variant 0.43 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782636 c.1407G>C synonymous_variant 0.43 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782639 c.1404A>G synonymous_variant 0.41 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782651 c.1392T>C synonymous_variant 0.46 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782948 c.1095A>G synonymous_variant 0.56 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782957 c.1086A>G synonymous_variant 0.53 kanamycin Not assoc w R - Interim
levofloxacin Not assoc w R - Interim
moxifloxacin Not assoc w R - Interim
streptomycin Not assoc w R - Interim
rifampicin Not assoc w R - Interim
ethambutol Not assoc w R - Interim
amikacin Not assoc w R - Interim
Rv2477c 2782960 c.1083C>G synonymous_variant 0.55 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782969 c.1074A>C synonymous_variant 0.58 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782972 c.1071G>C synonymous_variant 0.55 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782981 c.1062G>C synonymous_variant 0.48 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2782984 c.1059T>C synonymous_variant 0.48 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783002 c.1041T>C synonymous_variant 0.39 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783005 c.1038C>G synonymous_variant 0.39 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783008 c.1035C>G synonymous_variant 0.39 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783010 c.1032delG frameshift_variant 0.39 kanamycin Uncertain significance
levofloxacin Uncertain significance
moxifloxacin Uncertain significance
streptomycin Uncertain significance
rifampicin Uncertain significance
ethambutol Uncertain significance
amikacin Uncertain significance
Rv2477c 2783015 c.1027_1028insC frameshift_variant 0.39 kanamycin Uncertain significance
levofloxacin Uncertain significance
moxifloxacin Uncertain significance
streptomycin Uncertain significance
rifampicin Uncertain significance
ethambutol Uncertain significance
amikacin Uncertain significance
Rv2477c 2783038 p.Ala335Val missense_variant 0.33 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783044 c.999G>T synonymous_variant 0.33 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783593 c.450T>C synonymous_variant 0.3 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783605 c.438T>C synonymous_variant 0.32 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783628 p.Ala139Ser missense_variant 0.36 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783634 p.Leu137Ile missense_variant 0.36 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783635 p.Asp136Glu missense_variant 0.36 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783647 c.396C>G synonymous_variant 0.3 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783653 c.390C>T synonymous_variant 0.31 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783656 c.387G>C synonymous_variant 0.31 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783659 p.Glu128Lys missense_variant 0.31 kanamycin
levofloxacin
moxifloxacin
streptomycin Uncertain significance
rifampicin Uncertain significance
ethambutol Uncertain significance
amikacin
Rv2477c 2783665 c.378A>G synonymous_variant 0.32 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783668 c.375G>C synonymous_variant 0.33 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783672 p.Arg124Glu missense_variant 0.33 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783683 c.360A>G synonymous_variant 0.31 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783689 c.354G>C synonymous_variant 0.32 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2477c 2783700 p.Thr115Ser missense_variant 0.32 kanamycin
levofloxacin
moxifloxacin
streptomycin
rifampicin
ethambutol
amikacin
Rv2752c 3065711 p.Gly161Ser missense_variant 1.0 levofloxacin Uncertain significance
moxifloxacin Not assoc w R
isoniazid Not assoc w R
rifampicin Not assoc w R
ethambutol Not assoc w R
ald 3086788 c.-32T>C upstream_gene_variant 1.0 cycloserine
fbiD 3339333 c.216G>A synonymous_variant 1.0 pretomanid
delamanid Not assoc w R - Interim
clofazimine Not assoc w R - Interim
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0 pyrazinamide Not assoc w R - Interim
mtrB 3625065 p.Met517Leu missense_variant 1.0 rifampicin Not assoc w R
bedaquiline Uncertain significance
mtrB 3626562 p.Pro18Ser missense_variant 1.0 rifampicin Not assoc w R
bedaquiline Uncertain significance
mtrA 3626804 c.546A>G synonymous_variant 0.5 rifampicin Not assoc w R - Interim
bedaquiline
mtrB 3626810 c.-197A>G upstream_gene_variant 0.61 rifampicin
bedaquiline
mtrA 3626822 p.Asp176Glu missense_variant 0.65 rifampicin
bedaquiline
mtrB 3626825 c.-212T>G upstream_gene_variant 0.66 rifampicin
bedaquiline
mtrB 3626831 c.-218T>C upstream_gene_variant 0.67 rifampicin
bedaquiline
mtrB 3626858 c.-245A>G upstream_gene_variant 0.59 rifampicin
bedaquiline
mtrB 3626866 c.-253T>C upstream_gene_variant 0.58 rifampicin
bedaquiline
mtrB 3626879 c.-266G>C upstream_gene_variant 0.48 rifampicin
bedaquiline
mtrB 3626885 c.-272A>C upstream_gene_variant 0.48 rifampicin
bedaquiline
mtrB 3626888 c.-277_-275delTTGinsCTC upstream_gene_variant 0.48 rifampicin
bedaquiline
mtrA 3626898 p.Gln151Leu missense_variant 0.5 rifampicin
bedaquiline
mtrB 3626900 c.-287G>A upstream_gene_variant 0.54 rifampicin
bedaquiline
mtrB 3626903 c.-290T>C upstream_gene_variant 0.62 rifampicin
bedaquiline
mtrA 3626908 p.Asn148Asp missense_variant 0.62 rifampicin
bedaquiline
mtrB 3626912 c.-299T>G upstream_gene_variant 0.65 rifampicin
bedaquiline
mtrB 3626930 c.-317A>T upstream_gene_variant 0.5 rifampicin
bedaquiline
rpoA 3877613 p.Ile299Val missense_variant 0.31 rifampicin
rpoA 3877617 c.891G>C synonymous_variant 0.35 rifampicin
rpoA 3877638 c.870T>A synonymous_variant 0.4 rifampicin
rpoA 3877656 c.852T>G synonymous_variant 0.42 rifampicin Not assoc w R - Interim
rpoA 3877665 c.843C>G synonymous_variant 0.38 rifampicin Not assoc w R - Interim
rpoA 3877668 c.840A>G synonymous_variant 0.36 rifampicin
rpoA 3877677 p.Ala277Gly missense_variant 0.33 rifampicin
rpoA 3877680 c.828G>C synonymous_variant 0.33 rifampicin Not assoc w R - Interim
rpoA 3877685 c.823C>T synonymous_variant 0.36 rifampicin
rpoA 3877686 c.822A>G synonymous_variant 0.36 rifampicin Not assoc w R - Interim
rpoA 3877692 c.816G>C synonymous_variant 0.45 rifampicin Not assoc w R - Interim
rpoA 3877704 c.804G>T synonymous_variant 0.53 rifampicin Not assoc w R - Interim
rpoA 3877734 c.774G>C synonymous_variant 0.38 rifampicin
rpoA 3877737 c.771G>C synonymous_variant 0.38 rifampicin
rpoA 3877740 c.768G>C synonymous_variant 0.37 rifampicin
rpoA 3877743 c.765T>C synonymous_variant 0.37 rifampicin Not assoc w R - Interim
rpoA 3877749 c.759C>T synonymous_variant 0.35 rifampicin Not assoc w R - Interim
rpoA 3877752 p.Asp252Glu missense_variant 0.36 rifampicin
rpoA 3877764 p.Ala248Gly missense_variant 0.33 rifampicin
rpoA 3877770 c.738A>C synonymous_variant 0.33 rifampicin
rpoA 3877773 c.735G>T synonymous_variant 0.33 rifampicin
rpoA 3877776 c.732T>C synonymous_variant 0.33 rifampicin Not assoc w R - Interim
rpoA 3877794 c.714G>C synonymous_variant 0.36 rifampicin Not assoc w R - Interim
rpoA 3877800 c.708G>C synonymous_variant 0.35 rifampicin
rpoA 3877803 c.705G>A synonymous_variant 0.36 rifampicin
rpoA 3877821 c.687C>A synonymous_variant 0.21 rifampicin
rpoA 3877824 c.684G>A synonymous_variant 0.21 rifampicin Not assoc w R - Interim
rpoA 3878055 c.453A>G synonymous_variant 0.22 rifampicin
rpoA 3878061 c.447G>C synonymous_variant 0.24 rifampicin
rpoA 3878067 c.441C>G synonymous_variant 0.29 rifampicin
rpoA 3878070 c.438T>C synonymous_variant 0.28 rifampicin
rpoA 3878082 c.426T>G synonymous_variant 0.31 rifampicin Not assoc w R - Interim
rpoA 3878102 p.Val136Ile missense_variant 0.21 rifampicin
rpoA 3878103 c.405A>G synonymous_variant 0.21 rifampicin
rpoA 3878106 c.402G>C synonymous_variant 0.23 rifampicin
rpoA 3878118 c.390T>C synonymous_variant 0.27 rifampicin
rpoA 3878124 c.384G>C synonymous_variant 0.27 rifampicin
rpoA 3878127 c.381G>C synonymous_variant 0.26 rifampicin
rpoA 3878130 c.378C>G synonymous_variant 0.27 rifampicin
rpoA 3878141 p.Met123Leu missense_variant 0.26 rifampicin Uncertain significance
rpoA 3878142 p.Gly122Asp missense_variant 0.26 rifampicin Uncertain significance
rpoA 3878145 c.363C>G synonymous_variant 0.26 rifampicin
rpoA 3878153 p.His119Asn missense_variant 0.27 rifampicin
rpoA 3878157 c.351C>G synonymous_variant 0.28 rifampicin
rpoA 3878193 c.315T>C synonymous_variant 0.19 rifampicin Not assoc w R - Interim
rpoA 3878196 p.Glu104Thr missense_variant 0.19 rifampicin
rpoA 3878199 c.309T>C synonymous_variant 0.23 rifampicin
rpoA 3878205 c.303T>C synonymous_variant 0.35 rifampicin Not assoc w R - Interim
rpoA 3878217 p.Leu97Val missense_variant 0.42 rifampicin
rpoA 3878244 p.Glu88Asp missense_variant 0.35 rifampicin
rpoA 3878247 c.261G>C synonymous_variant 0.35 rifampicin
rpoA 3878251 c.256_257delTCinsAG synonymous_variant 0.35 rifampicin
rpoA 3878256 c.252G>C synonymous_variant 0.35 rifampicin
rpoA 3878259 c.249G>C synonymous_variant 0.35 rifampicin Not assoc w R - Interim
rpoA 3878262 p.Ser82Gly missense_variant 0.34 rifampicin
rpoA 3878271 c.237T>C synonymous_variant 0.38 rifampicin Not assoc w R - Interim
rpoA 3878283 p.Glu75Asp missense_variant 0.41 rifampicin Uncertain significance
rpoA 3878292 c.216T>C synonymous_variant 0.43 rifampicin Not assoc w R - Interim
rpoA 3878298 c.210A>G synonymous_variant 0.42 rifampicin Not assoc w R - Interim
rpoA 3878301 c.207C>G synonymous_variant 0.4 rifampicin Not assoc w R - Interim
rpoA 3878310 c.198G>C synonymous_variant 0.4 rifampicin
rpoA 3878313 c.195G>C synonymous_variant 0.42 rifampicin Not assoc w R - Interim
rpoA 3878322 c.186A>G synonymous_variant 0.4 rifampicin Not assoc w R - Interim
rpoA 3879073 c.-566A>G upstream_gene_variant 0.41 rifampicin
rpoA 3879079 c.-572A>C upstream_gene_variant 0.54 rifampicin
rpoA 3879088 c.-581A>C upstream_gene_variant 0.62 rifampicin
rpoA 3879094 c.-587T>C upstream_gene_variant 0.67 rifampicin
rpoA 3879097 c.-590C>A upstream_gene_variant 0.68 rifampicin
rpoA 3879121 c.-614T>C upstream_gene_variant 0.72 rifampicin
rpoA 3879127 c.-620T>C upstream_gene_variant 0.74 rifampicin
rpoA 3879130 c.-623A>G upstream_gene_variant 0.74 rifampicin
rpoA 3879136 c.-629A>G upstream_gene_variant 0.76 rifampicin
rpoA 3879154 c.-647T>C upstream_gene_variant 0.8 rifampicin
rpoA 3879160 c.-653A>G upstream_gene_variant 0.8 rifampicin
rpoA 3879181 c.-676_-674delAAGinsCGT upstream_gene_variant 0.72 rifampicin
rpoA 3879202 c.-695T>A upstream_gene_variant 0.66 rifampicin
rpoA 3879215 c.-709_-708delACinsGT upstream_gene_variant 0.59 rifampicin
rpoA 3879222 c.-715T>C upstream_gene_variant 0.56 rifampicin
rpoA 3879223 c.-716G>T upstream_gene_variant 0.56 rifampicin
rpoA 3879226 c.-719G>T upstream_gene_variant 0.56 rifampicin
rpoA 3879229 c.-722A>G upstream_gene_variant 0.54 rifampicin
rpoA 3879232 c.-725A>G upstream_gene_variant 0.54 rifampicin
clpC1 4038740 c.1965G>C synonymous_variant 0.77 pyrazinamide
clpC1 4038749 c.1956C>A synonymous_variant 0.81 pyrazinamide
clpC1 4038755 c.1950G>T synonymous_variant 0.93 pyrazinamide
clpC1 4038764 c.1941C>G synonymous_variant 0.95 pyrazinamide
clpC1 4038767 c.1938G>T synonymous_variant 0.95 pyrazinamide
clpC1 4038773 c.1932T>C synonymous_variant 0.96 pyrazinamide
clpC1 4038782 c.1923G>C synonymous_variant 0.96 pyrazinamide
clpC1 4038791 c.1914G>C synonymous_variant 0.96 pyrazinamide
clpC1 4038794 p.Ser637Thr missense_variant 0.96 pyrazinamide
clpC1 4038812 c.1893T>C synonymous_variant 0.97 pyrazinamide
clpC1 4038815 c.1890G>C synonymous_variant 0.97 pyrazinamide
clpC1 4038845 c.1860G>C synonymous_variant 0.94 pyrazinamide
clpC1 4038860 c.1845G>C synonymous_variant 0.9 pyrazinamide Not assoc w R - Interim
clpC1 4038878 c.1827A>G synonymous_variant 0.87 pyrazinamide Not assoc w R - Interim
clpC1 4038890 c.1815G>A synonymous_variant 0.78 pyrazinamide
clpC1 4038899 c.1806C>G synonymous_variant 0.67 pyrazinamide
clpC1 4038905 c.1800A>T synonymous_variant 0.65 pyrazinamide
clpC1 4038911 c.1794G>C synonymous_variant 0.54 pyrazinamide
clpC1 4038917 c.1788C>T synonymous_variant 0.52 pyrazinamide
clpC1 4038923 c.1782A>G synonymous_variant 0.43 pyrazinamide
clpC1 4038926 c.1779G>T synonymous_variant 0.41 pyrazinamide
clpC1 4038971 c.1734T>C synonymous_variant 0.33 pyrazinamide
clpC1 4038974 c.1731T>G synonymous_variant 0.36 pyrazinamide
clpC1 4038977 c.1728G>C synonymous_variant 0.38 pyrazinamide
clpC1 4038986 p.Asp573Glu missense_variant 0.39 pyrazinamide
clpC1 4038989 c.1716T>C synonymous_variant 0.39 pyrazinamide
clpC1 4038995 c.1708_1710delTTGinsCTC synonymous_variant 0.48 pyrazinamide
clpC1 4039004 c.1701C>G synonymous_variant 0.53 pyrazinamide
clpC1 4039010 c.1695G>C synonymous_variant 0.56 pyrazinamide
clpC1 4039016 c.1689C>G synonymous_variant 0.61 pyrazinamide
clpC1 4039022 c.1683A>G synonymous_variant 0.62 pyrazinamide
clpC1 4039031 c.1674T>A synonymous_variant 0.64 pyrazinamide
clpC1 4039040 c.1665C>G synonymous_variant 0.72 pyrazinamide
clpC1 4039043 c.1662G>T synonymous_variant 0.72 pyrazinamide
clpC1 4039070 c.1635G>C synonymous_variant 0.66 pyrazinamide
clpC1 4039073 c.1632C>T synonymous_variant 0.64 pyrazinamide
clpC1 4039085 c.1620A>G synonymous_variant 0.71 pyrazinamide
clpC1 4039097 c.1608G>C synonymous_variant 0.66 pyrazinamide
clpC1 4039103 c.1602T>C synonymous_variant 0.65 pyrazinamide
clpC1 4039106 c.1599G>T synonymous_variant 0.65 pyrazinamide
clpC1 4039121 c.1584T>C synonymous_variant 0.57 pyrazinamide
clpC1 4039359 p.Ser449Asn missense_variant 0.31 pyrazinamide
clpC1 4039361 c.1344C>G synonymous_variant 0.31 pyrazinamide
clpC1 4039382 c.1323C>G synonymous_variant 0.32 pyrazinamide
clpC1 4039391 c.1314T>G synonymous_variant 0.29 pyrazinamide
clpC1 4039394 c.1311G>C synonymous_variant 0.3 pyrazinamide
clpC1 4039397 c.1308A>G synonymous_variant 0.29 pyrazinamide
clpC1 4039406 c.1299G>C synonymous_variant 0.39 pyrazinamide
clpC1 4039412 c.1293T>G synonymous_variant 0.41 pyrazinamide
clpC1 4039415 p.Glu430Asp missense_variant 0.47 pyrazinamide Uncertain significance
clpC1 4039427 p.Glu426Asp missense_variant 0.53 pyrazinamide
clpC1 4039430 c.1275T>C synonymous_variant 0.55 pyrazinamide
clpC1 4039442 c.1263A>G synonymous_variant 0.57 pyrazinamide
clpC1 4039448 c.1257A>G synonymous_variant 0.6 pyrazinamide Not assoc w R - Interim
clpC1 4039454 c.1251A>G synonymous_variant 0.55 pyrazinamide Not assoc w R - Interim
clpC1 4039463 c.1242C>G synonymous_variant 0.53 pyrazinamide
clpC1 4039466 c.1239T>C synonymous_variant 0.55 pyrazinamide
clpC1 4039469 c.1236T>C synonymous_variant 0.5 pyrazinamide
clpC1 4039472 c.1233G>C synonymous_variant 0.49 pyrazinamide
clpC1 4039478 c.1227G>C synonymous_variant 0.46 pyrazinamide
clpC1 4039481 c.1224T>G synonymous_variant 0.46 pyrazinamide Not assoc w R - Interim
clpC1 4039484 c.1221T>C synonymous_variant 0.47 pyrazinamide
clpC1 4039499 c.1206G>C synonymous_variant 0.57 pyrazinamide
clpC1 4039517 c.1188C>G synonymous_variant 0.67 pyrazinamide
clpC1 4039541 c.1164C>G synonymous_variant 0.65 pyrazinamide
clpC1 4039544 c.1161C>T synonymous_variant 0.63 pyrazinamide
clpC1 4039547 c.1158C>G synonymous_variant 0.63 pyrazinamide
clpC1 4039553 c.1152C>G synonymous_variant 0.62 pyrazinamide
clpC1 4039556 c.1149G>C synonymous_variant 0.62 pyrazinamide
clpC1 4039565 c.1140G>C synonymous_variant 0.63 pyrazinamide
clpC1 4039570 p.Met379Leu missense_variant 0.63 pyrazinamide Uncertain significance
clpC1 4039574 p.Ala377Ser missense_variant 0.63 pyrazinamide
clpC1 4039577 c.1128T>C synonymous_variant 0.63 pyrazinamide Not assoc w R - Interim
clpC1 4039586 c.1119G>C synonymous_variant 0.66 pyrazinamide
clpC1 4039589 c.1116G>C synonymous_variant 0.68 pyrazinamide
clpC1 4039592 c.1113G>C synonymous_variant 0.73 pyrazinamide
clpC1 4039616 c.1089G>C synonymous_variant 0.83 pyrazinamide
clpC1 4039646 p.Glu353Asp missense_variant 0.74 pyrazinamide
clpC1 4039649 c.1056G>C synonymous_variant 0.76 pyrazinamide
clpC1 4039652 p.Thr351Ser missense_variant 0.76 pyrazinamide
clpC1 4039661 c.1044T>C synonymous_variant 0.75 pyrazinamide
clpC1 4039685 c.1020C>T synonymous_variant 0.78 pyrazinamide
clpC1 4039691 c.1014G>C synonymous_variant 0.79 pyrazinamide
clpC1 4039694 c.1011G>A synonymous_variant 0.79 pyrazinamide
clpC1 4039724 c.981A>G synonymous_variant 0.82 pyrazinamide
clpC1 4039742 c.963C>T synonymous_variant 0.84 pyrazinamide
clpC1 4039748 c.957G>C synonymous_variant 0.84 pyrazinamide
clpC1 4039751 c.954A>G synonymous_variant 0.83 pyrazinamide
clpC1 4039757 c.948A>G synonymous_variant 0.85 pyrazinamide
clpC1 4039763 c.942C>T synonymous_variant 0.84 pyrazinamide Not assoc w R - Interim
clpC1 4039769 c.936C>G synonymous_variant 0.86 pyrazinamide
clpC1 4039778 c.927A>G synonymous_variant 0.87 pyrazinamide
clpC1 4039781 c.924G>C synonymous_variant 0.89 pyrazinamide
clpC1 4039817 c.888A>T synonymous_variant 0.86 pyrazinamide
clpC1 4039820 c.885T>G synonymous_variant 0.86 pyrazinamide
clpC1 4039823 c.882T>C synonymous_variant 0.86 pyrazinamide Not assoc w R - Interim
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.85 pyrazinamide
clpC1 4039850 c.855T>C synonymous_variant 0.84 pyrazinamide
clpC1 4039865 c.840T>C synonymous_variant 0.81 pyrazinamide
clpC1 4039898 c.807C>G synonymous_variant 0.75 pyrazinamide
clpC1 4039904 c.801A>G synonymous_variant 0.73 pyrazinamide
clpC1 4039907 c.798G>A synonymous_variant 0.73 pyrazinamide Not assoc w R - Interim
clpC1 4039925 c.780C>G synonymous_variant 0.75 pyrazinamide
clpC1 4039931 c.774T>C synonymous_variant 0.75 pyrazinamide
clpC1 4039934 c.771G>C synonymous_variant 0.75 pyrazinamide
clpC1 4039937 c.768G>C synonymous_variant 0.75 pyrazinamide
clpC1 4039949 c.756G>C synonymous_variant 0.73 pyrazinamide
clpC1 4039952 c.753T>C synonymous_variant 0.73 pyrazinamide
clpC1 4039955 c.750G>C synonymous_variant 0.74 pyrazinamide
clpC1 4039958 c.747G>C synonymous_variant 0.72 pyrazinamide
clpC1 4039979 c.726C>G synonymous_variant 0.76 pyrazinamide
clpC1 4039988 c.717C>G synonymous_variant 0.74 pyrazinamide
clpC1 4039991 c.714G>C synonymous_variant 0.76 pyrazinamide
clpC1 4040002 p.His235Asn missense_variant 0.75 pyrazinamide
clpC1 4040003 c.702G>C synonymous_variant 0.74 pyrazinamide
clpC1 4040018 c.687G>C synonymous_variant 0.73 pyrazinamide
clpC1 4040021 c.684A>C synonymous_variant 0.71 pyrazinamide Not assoc w R - Interim
clpC1 4040024 c.681A>G synonymous_variant 0.73 pyrazinamide
clpC1 4040033 c.672G>C synonymous_variant 0.7 pyrazinamide
clpC1 4040063 c.642G>C synonymous_variant 0.68 pyrazinamide Not assoc w R - Interim
clpC1 4040408 c.297C>A synonymous_variant 0.44 pyrazinamide
clpC1 4040411 c.294T>C synonymous_variant 0.5 pyrazinamide Not assoc w R - Interim
clpC1 4040423 c.282A>G synonymous_variant 0.56 pyrazinamide Not assoc w R - Interim
clpC1 4040429 c.274_276delTTGinsCTC synonymous_variant 0.56 pyrazinamide
clpC1 4040435 c.270G>C synonymous_variant 0.59 pyrazinamide
clpC1 4040450 c.255A>G synonymous_variant 0.63 pyrazinamide Not assoc w R - Interim
clpC1 4040456 c.249C>T synonymous_variant 0.66 pyrazinamide Not assoc w R - Interim
clpC1 4040462 c.243C>G synonymous_variant 0.68 pyrazinamide
clpC1 4040465 c.240T>C synonymous_variant 0.67 pyrazinamide
clpC1 4040471 c.234T>C synonymous_variant 0.65 pyrazinamide Not assoc w R - Interim
clpC1 4040480 c.225T>C synonymous_variant 0.65 pyrazinamide Not assoc w R - Interim
clpC1 4040522 c.183T>C synonymous_variant 0.63 pyrazinamide Not assoc w R - Interim
clpC1 4040528 c.177G>C synonymous_variant 0.6 pyrazinamide
clpC1 4040537 c.168G>C synonymous_variant 0.59 pyrazinamide
clpC1 4040540 c.165G>C synonymous_variant 0.58 pyrazinamide
clpC1 4040549 c.154_156delTTGinsCTC synonymous_variant 0.53 pyrazinamide
clpC1 4040561 c.144A>C synonymous_variant 0.52 pyrazinamide Not assoc w R - Interim
embA 4243460 c.228C>T synonymous_variant 1.0 ethambutol Not assoc w R
aftB 4269183 c.-347T>C upstream_gene_variant 0.27 ethambutol
ubiA 4269190 p.Ser215Thr missense_variant 0.29 ethambutol
ubiA 4269199 p.Ser212Asn missense_variant 0.29 ethambutol
aftB 4269201 c.-365A>G upstream_gene_variant 0.29 ethambutol
ubiA 4269211 p.Lys208Arg missense_variant 0.34 ethambutol Uncertain significance
ubiA 4269220 p.Ala205Lys missense_variant 0.34 ethambutol
ubiA 4269222 c.612T>C synonymous_variant 0.37 ethambutol Not assoc w R - Interim
aftB 4269234 c.-398A>G upstream_gene_variant 0.44 ethambutol
aftB 4269240 c.-404G>C upstream_gene_variant 0.44 ethambutol
ubiA 4269243 p.His197Gln missense_variant 0.46 ethambutol
ubiA 4269270 p.Val188Ala missense_variant 0.42 ethambutol Uncertain significance
aftB 4269285 c.-449T>A upstream_gene_variant 0.4 ethambutol
aftB 4269291 c.-455A>C upstream_gene_variant 0.39 ethambutol
ethA 4324777 c.532_*1226del stop_lost&conservative_inframe_deletion&splice_region_variant 1.0 ethionamide
whiB6 4338595 c.-75delG upstream_gene_variant 1.0 kanamycin Not assoc w R
capreomycin Not assoc w R
amikacin Not assoc w R
whiB6 4338732 c.-211C>T upstream_gene_variant 1.0 kanamycin
capreomycin
amikacin
gid 4407588 c.615A>G synonymous_variant 1.0 streptomycin Not assoc w R
gid 4407927 p.Glu92Asp missense_variant 1.0 streptomycin Not assoc w R