ERR4799619
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799206
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR8975821
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR25827686
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10748141
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR8692797
|
Other
|
lineage4.9
|
None
|
SRR8692765
|
Other
|
lineage4.9
|
None
|
SRR8692848
|
Other
|
lineage4.9
|
None
|
SRR8692857
|
Other
|
lineage4.9
|
None
|
SRR8692854
|
Other
|
lineage4.9
|
None
|
SRR8692869
|
Other
|
lineage4.9
|
None
|
SRR8692884
|
Other
|
lineage4.9
|
None
|
ERR4276886
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692839
|
Other
|
lineage4.9
|
None
|
SRR8692781
|
Other
|
lineage4.9
|
None
|
SRR8692767
|
Other
|
lineage4.9
|
None
|
SRR8692820
|
Other
|
lineage4.9
|
None
|
SRR8692837
|
Other
|
lineage4.9
|
None
|
SRR8692908
|
Other
|
lineage4.9
|
None
|
SRR29273872
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692904
|
Other
|
lineage4.9
|
None
|
SRR25827313
|
XDR-TB
|
lineage3;lineage4.8
|
None
|
SRR8692874
|
Other
|
lineage4.9
|
None
|
ERR4799719
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13288949
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13289379
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR14802029
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR23082913
|
Other
|
lineage4.9
|
None
|
ERR8975520
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993005
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4872046
|
XDR-TB
|
lineage4.7
|
None
|
SRR8692829
|
Other
|
lineage4.9
|
None
|
SRR8692806
|
Other
|
lineage4.9
|
None
|
SRR29538871
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR10869075
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8665989
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4276868
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798473
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800381
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR22175264
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4872292
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827394
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4.9
|
None
|
SRR18715105
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11081995
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11068844
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692903
|
Other
|
lineage4.9
|
None
|
ERR4797457
|
XDR-TB
|
lineage4.8
|
in
|
SRR24710190
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827482
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796479
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR8665874
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799670
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR11081809
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR8975767
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4872275
|
XDR-TB
|
lineage4.2.1
|
None
|
ERR9993202
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR13232556
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827617
|
XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3
|
None
|
SRR14801708
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR22175219
|
XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
SRR25207304
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665988
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888050
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29274748
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692875
|
Other
|
lineage4.9
|
None
|
ERR4799841
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28351161
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692796
|
Other
|
lineage4.9
|
None
|
SRR8692830
|
Other
|
lineage4.9
|
None
|
ERR11081813
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827685
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266820
|
XDR-TB
|
lineage3
|
None
|
SRR23310868
|
XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR25827871
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22873604
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827440
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR29017184
|
XDR-TB
|
lineage3
|
None
|
ERR4797521
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR11043615
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR28706626
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13286153
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR19977732
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22175226
|
XDR-TB
|
lineage4.2.2.2
|
None
|
ERR4822600
|
XDR-TB
|
lineage4.3.3
|
de
|
SRR19977734
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992671
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807683
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR5341353
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25207067
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR8692773
|
Other
|
lineage4.9
|
None
|
SRR8692827
|
Other
|
lineage4.9
|
None
|
SRR8692846
|
Other
|
lineage4.9
|
None
|
ERR8025586
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9992981
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9992982
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827624
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR8692844
|
Other
|
lineage4.9
|
None
|
SRR8692756
|
Other
|
lineage4.9
|
None
|
ERR4797902
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR13289386
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR14807627
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692809
|
Other
|
lineage4.9
|
None
|
SRR25827542
|
XDR-TB
|
lineage4.4.1.2
|
None
|
SRR25827674
|
XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
SRR8692898
|
Other
|
lineage4.9
|
None
|
ERR4872039
|
XDR-TB
|
lineage4.7
|
None
|
SRR22175247
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23310906
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827402
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
ERR4799980
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29681451
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799690
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4872301
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24709933
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR10303328
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR19977730
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351388
|
XDR-TB
|
lineage4.2.1
|
None
|
ERR13266647
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR28045492
|
XDR-TB
|
lineage1.2.2.2
|
None
|
SRR28646095
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28044666
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888054
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28498382
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888073
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11774901
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11774902
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888057
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13288956
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR29385257
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29539816
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539820
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798738
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR29539852
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539239
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539441
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4808903
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR14801831
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692813
|
Other
|
lineage4.9
|
None
|
SRR25827664
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692772
|
Other
|
lineage4.9
|
None
|
ERR4797191
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797865
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR8665617
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR19977733
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11043735
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11774910
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4872312
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261620
|
XDR-TB
|
lineage4.1.2
|
None
|
ERR4808866
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR29681435
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799911
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR11044701
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692897
|
Other
|
lineage4.9
|
None
|
ERR13260081
|
XDR-TB
|
La1.2.BCG
|
None
|
ERR10112856
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR10430380
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799961
|
XDR-TB
|
lineage4.8
|
in
|
ERR13266761
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR24710213
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799888
|
XDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR8665616
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR6930897
|
XDR-TB
|
La1.2.BCG
|
None
|
ERR8975030
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR14782700
|
XDR-TB
|
lineage4.2.1
|
None
|
ERR4276867
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799523
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827628
|
XDR-TB
|
lineage3
|
None
|
ERR4799622
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8692817
|
Other
|
lineage4.9
|
None
|
SRR8692881
|
Other
|
lineage4.9
|
None
|
ERR10748132
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4798723
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799681
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4872269
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798017
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8692794
|
Other
|
lineage4.9
|
None
|
SRR8692791
|
Other
|
lineage4.9
|
None
|
SRR8692804
|
Other
|
lineage4.9
|
None
|
SRR8692807
|
Other
|
lineage4.9
|
None
|
SRR19977729
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827543
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR8692763
|
Other
|
lineage4.9
|
None
|
SRR25827768
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4
|
None
|
ERR4799245
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799348
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR28888061
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4809320
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR29385381
|
Other
|
lineage2.2.1
|
None
|
ERR13286163
|
XDR-TB
|
lineage1.2.2.2
|
None
|
ERR4797406
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR9993050
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13266490
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796820
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR9992611
|
XDR-TB
|
lineage1.2.2.2
|
None
|
SRR22424782
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5866095
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692788
|
Other
|
lineage4.9
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
ERR9993004
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR8692909
|
Other
|
lineage4.9
|
None
|
SRR14807508
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800599
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800626
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992685
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR27757530
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692836
|
Other
|
lineage4.9
|
None
|
ERR4796447
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8692760
|
Other
|
lineage4.9
|
None
|
SRR8692780
|
Other
|
lineage4.9
|
None
|
SRR8692891
|
Other
|
lineage4.9
|
None
|
SRR8692842
|
Other
|
lineage4.9
|
None
|
SRR25207180
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR25827780
|
XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR23938626
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692886
|
Other
|
lineage4.9
|
None
|
ERR4798248
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR25827364
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
SRR25827362
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4799214
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR29093120
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR8692843
|
Other
|
lineage4.9
|
None
|
ERR13289360
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13276165
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4872044
|
XDR-TB
|
lineage4.7
|
None
|
ERR4799252
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4796404
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827778
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827353
|
XDR-TB
|
lineage3.1.2
|
None
|
ERR4872325
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13288892
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR25827357
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3
|
None
|
SRR24710017
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR5153910
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR5341316
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4831404
|
XDR-TB
|
lineage2.2.1
|
de
|
SRR19977736
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4808856
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR14088365
|
XDR-TB
|
lineage3
|
None
|
ERR4798685
|
XDR-TB
|
lineage3.1.2
|
in
|
SRR10379908
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR8692761
|
Other
|
lineage4.9
|
None
|
SRR8692766
|
Other
|
lineage4.9
|
None
|
SRR8692823
|
Other
|
lineage4.9
|
None
|
ERR4822285
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692757
|
Other
|
lineage4.9
|
None
|
SRR8692801
|
Other
|
lineage4.9
|
None
|
SRR8692880
|
Other
|
lineage4.9
|
None
|
SRR8692786
|
Other
|
lineage4.9
|
None
|
SRR8692802
|
Other
|
lineage4.9
|
None
|
SRR8692832
|
Other
|
lineage4.9
|
None
|
SRR8692902
|
Other
|
lineage4.9
|
None
|
ERR11774898
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9993146
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29273768
|
XDR-TB
|
lineage4.8
|
None
|
SRR25827366
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28044767
|
XDR-TB
|
lineage3.1.2
|
None
|
ERR2515541
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR27069388
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13266034
|
Other
|
lineage4.2.1
|
None
|
SRR18003048
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8025756
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR13232559
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8692876
|
Other
|
lineage4.9
|
None
|
SRR28646090
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR28351424
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9993089
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993196
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR28351374
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045946
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR24710194
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28706638
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692758
|
Other
|
lineage4.9
|
None
|
SRR8692782
|
Other
|
lineage4.9
|
None
|
SRR8692907
|
Other
|
lineage4.9
|
None
|
SRR28351634
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR28888074
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR27757529
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888052
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992957
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR28498697
|
XDR-TB
|
lineage4.2.1
|
None
|
ERR13288830
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13288847
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4797849
|
XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25827530
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25827641
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25827727
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266528
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13267114
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13261174
|
XDR-TB
|
lineage4.2.2.2
|
None
|
SRR23310911
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797121
|
XDR-TB
|
lineage3.1.2
|
in
|
SRR8692777
|
Other
|
lineage4.9
|
None
|
SRR8692871
|
Other
|
lineage4.9
|
None
|
SRR8692873
|
Other
|
lineage4.9
|
None
|
SRR8692892
|
Other
|
lineage4.9
|
None
|
ERR4800347
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13276291
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR13289358
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993244
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR8692805
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
SRR14782507
|
XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR15723151
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827367
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR8692771
|
Other
|
lineage4.9
|
None
|
SRR8692819
|
Other
|
lineage4.9
|
None
|
SRR8692906
|
Other
|
lineage4.9
|
None
|
ERR5917997
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR25827510
|
XDR-TB
|
lineage2.2.1.2
|
None
|
SRR28888049
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773796
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11774904
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29273736
|
XDR-TB
|
lineage4.8
|
None
|
SRR29289405
|
XDR-TB
|
lineage3
|
None
|
SRR29056281
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4796343
|
XDR-TB
|
lineage4.8
|
in
|
SRR23311027
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR13232400
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR13262084
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5866493
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5918046
|
XDR-TB
|
lineage4.1.1.3
|
za
|
ERR13276320
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR29385280
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351484
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807610
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4872331
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351357
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13261153
|
XDR-TB
|
lineage4.8
|
None
|
SRR23310972
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9993069
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR11067627
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10748106
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11043952
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22048313
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR22175200
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800290
|
XDR-TB
|
lineage2.2.1.1;lineage4.8
|
in
|
SRR28045558
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28434995
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9993077
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13267005
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692769
|
Other
|
lineage4.9
|
None
|
SRR27757531
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23310932
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR25827834
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692776
|
Other
|
lineage4.9
|
None
|
SRR8692793
|
Other
|
lineage4.9
|
None
|
SRR8692814
|
Other
|
lineage4.9
|
None
|
ERR4831565
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4797965
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800476
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR10112907
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR28044688
|
XDR-TB
|
lineage3
|
None
|
SRR14782040
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692810
|
Other
|
lineage4.9
|
None
|
SRR25206924
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797363
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4809077
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR28888072
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4831102
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR26397816
|
Other
|
lineage4.9
|
None
|
SRR29056279
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR13232717
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23938696
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29056058
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR22175172
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9806941
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR24256298
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800291
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR552036
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR8692815
|
Other
|
lineage4.9
|
None
|
ERR13276181
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692821
|
Other
|
lineage4.9
|
None
|
ERR4276865
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8975656
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4797408
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827781
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796359
|
XDR-TB
|
lineage3
|
None
|
SRR21747026
|
Other
|
lineage4.9
|
None
|
ERR7975630
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8692818
|
Other
|
lineage4.9
|
None
|
SRR8692822
|
Other
|
lineage4.9
|
None
|
SRR8692824
|
Other
|
lineage4.9
|
None
|
SRR8692887
|
Other
|
|
None
|
SRR25827669
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28498452
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR21747037
|
Other
|
lineage4.9
|
None
|
ERR4872047
|
XDR-TB
|
lineage4.7
|
None
|
SRR29273829
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR13267049
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29914427
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692910
|
Other
|
lineage4.9
|
None
|
ERR13276394
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8975509
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR14807667
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14801603
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665880
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692833
|
Other
|
lineage4.9
|
None
|
ERR4797884
|
XDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
in
|
ERR4799027
|
HR-TB
|
lineage2.2.1
|
in
|
ERR11798720
|
XDR-TB
|
lineage4.2.1
|
None
|
ERR13261467
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR19977731
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992749
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR9992967
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR24710191
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807469
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16088577
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8692870
|
Other
|
lineage4.9
|
None
|
SRR8692890
|
Other
|
lineage4.9
|
None
|
SRR29093161
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR29273921
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13289343
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR16087902
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR19115684
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR8692895
|
Other
|
lineage4.9
|
None
|
SRR8692825
|
Other
|
lineage4.9
|
None
|
SRR8692774
|
Other
|
lineage4.9
|
None
|
ERR9993186
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351465
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR24709976
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692798
|
Other
|
lineage4.9
|
None
|
SRR8692899
|
Other
|
lineage4.9
|
None
|
SRR25827816
|
XDR-TB
|
lineage3.1.2
|
None
|
ERR4972534
|
XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SRR8692883
|
Other
|
lineage4.9
|
None
|
SRR29289389
|
XDR-TB
|
lineage4.2.2.2
|
None
|
ERR4553935
|
HR-TB
|
|
None
|
ERR9993211
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4831262
|
XDR-TB
|
lineage2.2.1
|
de
|
ERR4799634
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4822324
|
XDR-TB
|
lineage4.3.3
|
de
|
ERR7975629
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827329
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827619
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4872042
|
XDR-TB
|
lineage4.7
|
None
|
ERR4796740
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796503
|
XDR-TB
|
lineage3
|
in
|
SRR8692789
|
Other
|
lineage4.9
|
None
|
ERR552237
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692834
|
Other
|
lineage4.9
|
None
|
ERR4553961
|
HR-TB
|
|
None
|
SRR28045507
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888046
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351582
|
XDR-TB
|
lineage3
|
None
|
SRR28351318
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR28351212
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR28351163
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28498365
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR28498559
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28044935
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692762
|
Other
|
lineage4.9
|
None
|
SRR8692847
|
Other
|
lineage4.9
|
None
|
SRR8692888
|
Other
|
lineage4.9
|
None
|
SRR8692894
|
Other
|
lineage4.9
|
None
|
SRR8692893
|
Other
|
lineage4.9
|
None
|
SRR29538998
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539812
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR27757532
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13289366
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29385511
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799267
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR8975789
|
XDR-TB
|
lineage2.2.2;lineage4.9
|
None
|
SRR29017098
|
XDR-TB
|
lineage3
|
None
|
SRR29093955
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025693
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR8692787
|
Other
|
lineage4.9
|
None
|
ERR4797753
|
XDR-TB
|
lineage3
|
in
|
SRR8692856
|
Other
|
lineage4.9
|
None
|
SRR25207068
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR12916914
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13258590
|
Other
|
lineage4.9
|
None
|
ERR13266572
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4872297
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR25827582
|
XDR-TB
|
lineage3;lineage4.8
|
None
|
ERR4797808
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13266461
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR13289350
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR550916
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8025570
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025764
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR29289403
|
XDR-TB
|
lineage4.2.2.2
|
None
|
SRR25827850
|
XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR8975800
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8975982
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR9993076
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4822599
|
XDR-TB
|
lineage4.3.3
|
de
|
SRR22175225
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692867
|
Other
|
lineage4.9
|
None
|
SRR28351573
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2677416
|
XDR-TB
|
lineage4.3.3
|
de
|
SRR22175220
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888053
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2515224
|
XDR-TB
|
lineage2.2.1
|
za
|
ERR4798023
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797720
|
XDR-TB
|
lineage3
|
in
|
SRR26397804
|
Other
|
lineage4.1.1.3
|
None
|
SRR3105770
|
XDR-TB
|
lineage3
|
None
|
SRR28044397
|
XDR-TB
|
lineage3
|
None
|
SRR14807579
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28706698
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692784
|
Other
|
lineage4.9
|
None
|
SRR8692860
|
Other
|
lineage4.9
|
None
|
ERR551975
|
Other
|
lineage4.9
|
None
|
SRR25827749
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
SRR8692795
|
Other
|
lineage4.9
|
None
|
ERR4800353
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798843
|
XDR-TB
|
lineage4.2.2.2
|
in
|
ERR9992686
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR25827710
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992756
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR21747024
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29289412
|
XDR-TB
|
lineage3
|
None
|
SRR25827601
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR8692792
|
Other
|
lineage4.9
|
None
|
SRR9738479
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR19977735
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8975648
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351194
|
HR-TB
|
lineage2.2.1
|
None
|
SRR8692862
|
Other
|
lineage4.9
|
None
|
ERR4797885
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692816
|
Other
|
lineage4.9
|
None
|
ERR4798686
|
XDR-TB
|
lineage3.1.2.1
|
in
|
SRR28044392
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665615
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29273864
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28706466
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266033
|
Other
|
lineage4.2.1
|
None
|
SRR8692840
|
Other
|
lineage4.9
|
None
|
ERR9992948
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4799790
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8692831
|
Other
|
lineage4.9
|
None
|
ERR4800309
|
XDR-TB
|
lineage4.2.2.2
|
in
|
SRR25827345
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
SRR8692896
|
Other
|
lineage4.9
|
None
|
ERR3639751
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351440
|
XDR-TB
|
lineage3
|
None
|
SRR29274129
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4796896
|
XDR-TB
|
lineage4.8
|
in
|
ERR4799107
|
XDR-TB
|
lineage4.8
|
in
|
ERR4797703
|
MDR-TB
|
lineage2.2.1;lineage3
|
in
|
SRR27069367
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28888076
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692900
|
Other
|
lineage4.9
|
None
|
SRR8692790
|
Other
|
lineage4
|
None
|
ERR8975764
|
XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4796424
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR11044658
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692863
|
Other
|
lineage2.2;lineage4
|
None
|
ERR13289368
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13286165
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR27757527
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29093731
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13266575
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12062505
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798281
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798749
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13266114
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR8692865
|
Other
|
lineage4.9
|
None
|
ERR4831253
|
XDR-TB
|
lineage2.2.1
|
de
|
SRR29093366
|
XDR-TB
|
lineage2.2.2;lineage4.4.2
|
None
|
ERR13266605
|
XDR-TB
|
lineage4.8
|
None
|
ERR4831258
|
XDR-TB
|
lineage2.2.1
|
de
|
ERR4972575
|
XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SRR22175215
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4972536
|
HR-TB
|
lineage4.3.2
|
None
|
ERR9992662
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16168839
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16088563
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799529
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8692828
|
Other
|
lineage4.9
|
None
|
ERR4798827
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8692864
|
Other
|
lineage4.9
|
None
|
SRR8692775
|
Other
|
lineage4.9
|
None
|
SRR8692808
|
Other
|
lineage4.9
|
None
|
SRR8692845
|
Other
|
lineage4.9
|
None
|
ERR4822334
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827799
|
XDR-TB
|
lineage4.8
|
None
|
ERR4872295
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8692835
|
Other
|
lineage4.9
|
None
|
SRR28888051
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR8692764
|
Other
|
lineage4.9
|
None
|
SRR8692768
|
Other
|
lineage4.9
|
None
|
SRR8692770
|
Other
|
lineage4.9
|
None
|
ERR13259984
|
XDR-TB
|
lineage4.4.2
|
None
|
ERR13289335
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR25827325
|
XDR-TB
|
lineage2.2.1;lineage4.9
|
None
|
SRR28888058
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29274155
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR8692783
|
Other
|
lineage4.9
|
None
|
SRR25827438
|
XDR-TB
|
lineage4.8
|
None
|
SRR25827522
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR13232608
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4872048
|
XDR-TB
|
lineage4.7
|
None
|
SRR8692866
|
Other
|
lineage4.9
|
None
|
SRR24255931
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796360
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR13243565
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992723
|
XDR-TB
|
lineage2.2.2
|
None
|