TB-Profiler result

Run: SRR8692791
Summary

Run ID: SRR8692791

Sample name:

Date: 13-08-2023 21:51:36

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.96
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 0.88 linezolid
embB 4247582 p.Ala357Ser missense_variant 0.15 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5161 c.-79C>A upstream_gene_variant 0.18
gyrB 6057 p.Ser273Ile missense_variant 0.13
gyrB 6661 p.Met474Ile missense_variant 0.18
gyrB 6914 p.Gly559Arg missense_variant 0.17
gyrB 7079 p.Gly614Cys missense_variant 0.2
gyrA 8135 c.834C>A synonymous_variant 0.22
gyrA 8174 c.873C>A synonymous_variant 0.25
gyrA 9218 c.1917C>T synonymous_variant 0.14
gyrA 9230 c.1929T>C synonymous_variant 0.16
gyrA 9236 c.1935G>C synonymous_variant 0.14
gyrA 9242 c.1941A>C synonymous_variant 0.13
gyrA 9248 c.1947G>C synonymous_variant 0.15
gyrA 9252 p.Val651Ile missense_variant 0.15
gyrA 9266 p.Asp655Glu missense_variant 0.15
gyrA 9267 p.Asn656Gly missense_variant 0.15
gyrA 9275 c.1974G>A synonymous_variant 0.15
gyrA 9296 c.1995T>C synonymous_variant 0.17
gyrA 9299 c.1998G>C synonymous_variant 0.17
gyrA 9304 p.Gly668Glu missense_variant 0.17
gyrA 9311 c.2010C>T synonymous_variant 0.17
gyrA 9324 c.2023_2025delTCGinsAGC synonymous_variant 0.17
gyrA 9335 c.2034G>T synonymous_variant 0.16
gyrA 9345 c.2044A>C synonymous_variant 0.16
gyrA 9356 c.2055G>C synonymous_variant 0.15
gyrA 9653 c.2352C>A synonymous_variant 0.18
fgd1 491083 p.Val101Phe missense_variant 0.15
fgd1 491568 c.786C>A synonymous_variant 0.14
fgd1 491580 c.798C>A synonymous_variant 0.15
fgd1 491595 c.813C>A synonymous_variant 0.17
fgd1 491742 c.960T>C synonymous_variant 0.2
mshA 576010 c.663C>A synonymous_variant 0.25
mshA 576066 p.Pro240His missense_variant 0.15
rpoB 759883 p.Val26Ala missense_variant 0.2
rpoB 759978 p.Leu58Met missense_variant 0.17
rpoB 760235 c.429T>C synonymous_variant 0.18
rpoB 760244 c.438G>C synonymous_variant 0.18
rpoB 760256 c.450C>T synonymous_variant 0.25
rpoB 760283 c.477G>C synonymous_variant 0.25
rpoB 760772 c.966C>T synonymous_variant 0.17
rpoB 761388 p.Asp528Asn missense_variant 0.22
rpoB 761445 p.Arg547Ser missense_variant 0.14
rpoC 762476 c.-894C>A upstream_gene_variant 0.12
rpoC 762959 c.-411G>C upstream_gene_variant 0.22
rpoC 762962 c.-408C>T upstream_gene_variant 0.25
rpoB 763125 p.Pro1107Thr missense_variant 0.17
rpoB 763132 p.Pro1109Gln missense_variant 0.18
rpoC 763262 c.-108C>A upstream_gene_variant 0.15
rpoC 763411 c.42T>C synonymous_variant 0.1
rpoC 763414 c.45T>G synonymous_variant 0.1
rpoC 763456 c.87A>G synonymous_variant 0.13
rpoC 763468 c.99G>C synonymous_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.15
rpoC 763495 c.126G>A synonymous_variant 0.15
rpoC 763841 p.Glu158* stop_gained 0.12
rpoC 764213 c.844C>A synonymous_variant 0.25
rpoC 764746 c.1377G>T synonymous_variant 0.18
rpoC 764752 c.1383G>C synonymous_variant 0.18
rpoC 764758 c.1389C>G synonymous_variant 0.18
rpoC 764764 c.1395T>C synonymous_variant 0.18
rpoC 764800 c.1431G>A synonymous_variant 0.22
rpoC 764803 c.1434C>T synonymous_variant 0.22
rpoC 764809 c.1440C>T synonymous_variant 0.33
rpoC 764815 c.1446A>G synonymous_variant 0.33
rpoC 764827 c.1458G>C synonymous_variant 0.33
rpoC 764858 c.1489T>C synonymous_variant 0.21
rpoC 764869 c.1500C>T synonymous_variant 0.25
rpoC 764878 c.1509C>G synonymous_variant 0.25
rpoC 764887 c.1518G>C synonymous_variant 0.17
rpoC 764888 c.1519T>C synonymous_variant 0.17
rpoC 764911 c.1542A>G synonymous_variant 0.14
rpoC 764912 p.Met515Gln missense_variant 0.14
rpoC 764923 c.1554A>G synonymous_variant 0.15
rpoC 764935 c.1566T>C synonymous_variant 0.17
rpoC 764948 c.1579T>C synonymous_variant 0.18
rpoC 765423 p.Asn685Thr missense_variant 0.15
rpoC 765505 c.2136C>T synonymous_variant 0.14
rpoC 765839 p.Val824Leu missense_variant 0.22
rpoC 765847 p.Asn826Lys missense_variant 0.2
rpoC 765861 p.Phe831Tyr missense_variant 0.18
rpoC 765875 p.Val836Ile missense_variant 0.17
rpoC 765886 c.2517C>G synonymous_variant 0.18
rpoC 765947 c.2578T>C synonymous_variant 0.18
rpoC 766021 c.2652G>T synonymous_variant 0.15
rpoC 767076 p.Ala1236Val missense_variant 0.13
mmpL5 776182 p.Asp767Asn missense_variant 0.18
mmpL5 776383 p.Asp700Asn missense_variant 0.22
mmpL5 776402 c.2079C>A synonymous_variant 0.22
mmpL5 776410 p.Leu691Met missense_variant 0.2
mmpL5 776435 c.2046T>C synonymous_variant 0.2
mmpL5 776832 p.Thr550Ile missense_variant 0.22
mmpL5 777104 c.1377G>T synonymous_variant 0.15
mmpL5 778648 c.-168G>T upstream_gene_variant 0.25
mmpR5 779455 p.Arg156* stop_gained 0.14
rpsL 781651 p.Arg31Leu missense_variant 0.15
rpsL 781715 c.156T>C synonymous_variant 0.11
rpsL 781728 c.169T>C synonymous_variant 0.11
rpsL 781735 p.Ser59Thr missense_variant 0.12
rpsL 781737 p.Gln60Gly missense_variant 0.12
rpsL 781751 c.192G>C synonymous_variant 0.12
rpsL 781754 c.195G>C synonymous_variant 0.12
rpsL 781760 c.201T>C synonymous_variant 0.21
rpsL 781769 c.210G>A synonymous_variant 0.21
rpsL 781805 c.246G>C synonymous_variant 0.17
rpsL 781811 c.252C>T synonymous_variant 0.17
rpsL 781814 c.255C>T synonymous_variant 0.17
rpsL 781817 c.258G>T synonymous_variant 0.21
rpsL 781829 c.270G>C synonymous_variant 0.18
rpsL 781832 c.273T>G synonymous_variant 0.18
rpsL 781859 c.300T>C synonymous_variant 0.14
rpsL 781868 c.309T>C synonymous_variant 0.15
rpsL 781871 c.312G>C synonymous_variant 0.15
rpsL 781892 c.333A>G synonymous_variant 0.14
fbiC 1303145 p.Ser72* stop_gained 0.15
fbiC 1303168 p.Gly80Cys missense_variant 0.15
fbiC 1303833 c.903C>A synonymous_variant 0.17
fbiC 1305070 p.Asp714Tyr missense_variant 0.2
Rv1258c 1406435 c.906G>T synonymous_variant 0.29
Rv1258c 1406686 p.Val219Ile missense_variant 0.86
Rv1258c 1406803 p.Ala180Thr missense_variant 0.29
Rv1258c 1407232 p.Arg37Ser missense_variant 0.18
embR 1416682 c.666C>T synonymous_variant 0.17
embR 1417191 p.Asp53Tyr missense_variant 0.33
embR 1417285 p.Met21Ile missense_variant 0.2
atpE 1461066 p.Gly8Cys missense_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471755 n.-91C>A upstream_gene_variant 0.15
rrs 1471866 n.21C>T non_coding_transcript_exon_variant 0.33
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.5
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.5
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.5
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.5
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 0.55
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.55
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.4
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.2
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.2
rrs 1472290 n.445C>A non_coding_transcript_exon_variant 0.2
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.2
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.2
rrs 1472324 n.479G>T non_coding_transcript_exon_variant 0.2
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.22
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.29
rrs 1472825 n.980G>T non_coding_transcript_exon_variant 0.22
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.22
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.2
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.2
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.5
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.33
rrs 1473348 n.1503C>T non_coding_transcript_exon_variant 0.22
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.16
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.17
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.21
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.25
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.25
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.23
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.23
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.23
rrl 1473828 n.171G>C non_coding_transcript_exon_variant 0.3
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.3
rrl 1473830 n.173T>G non_coding_transcript_exon_variant 0.3
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.3
rrl 1474114 n.457C>A non_coding_transcript_exon_variant 0.22
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.29
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.17
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.17
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.17
rrl 1474457 n.800C>A non_coding_transcript_exon_variant 0.2
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.5
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.4
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.5
rrl 1474957 n.1300C>T non_coding_transcript_exon_variant 0.2
rrl 1475047 n.1390G>T non_coding_transcript_exon_variant 0.15
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.4
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.4
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.4
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.4
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.4
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.4
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.5
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.23
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.27
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.3
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.33
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.33
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.33
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.36
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.4
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.4
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.4
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.4
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.4
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.33
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.38
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.29
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.29
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.29
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.4
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.4
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.4
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.4
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.4
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.36
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.44
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.44
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.44
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.33
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.29
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.29
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.15
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.44
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.5
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.5
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.5
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 1.0
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 1.0
fabG1 1673323 c.-117C>A upstream_gene_variant 0.18
fabG1 1673714 p.Ser92Tyr missense_variant 0.15
fabG1 1674041 p.Gly201Ala missense_variant 0.11
inhA 1674492 p.Phe97Leu missense_variant 0.14
inhA 1674558 c.357C>A synonymous_variant 0.17
inhA 1674894 p.Asn231Lys missense_variant 0.15
rpsA 1833556 c.15C>A synonymous_variant 0.17
rpsA 1833627 p.Thr29Met missense_variant 0.12
rpsA 1833676 c.135A>G synonymous_variant 0.12
rpsA 1833679 c.138G>C synonymous_variant 0.12
rpsA 1833685 c.144G>T synonymous_variant 0.14
rpsA 1833694 c.153G>T synonymous_variant 0.14
rpsA 1833697 c.156C>G synonymous_variant 0.13
rpsA 1833709 c.168C>T synonymous_variant 0.12
rpsA 1833727 c.186G>A synonymous_variant 0.14
rpsA 1833734 p.Ala65Ser missense_variant 0.14
rpsA 1833740 p.Glu67* stop_gained 0.27
rpsA 1833745 c.204G>C synonymous_variant 0.13
rpsA 1833928 c.387G>C synonymous_variant 0.19
rpsA 1833970 c.429G>C synonymous_variant 0.22
rpsA 1833976 c.435C>T synonymous_variant 0.21
rpsA 1833979 c.438T>C synonymous_variant 0.21
rpsA 1833991 c.450C>A synonymous_variant 0.21
rpsA 1834000 c.459G>C synonymous_variant 0.19
rpsA 1834012 c.471G>C synonymous_variant 0.19
rpsA 1834015 c.474G>C synonymous_variant 0.19
rpsA 1834021 c.480C>T synonymous_variant 0.19
rpsA 1834030 c.489C>G synonymous_variant 0.22
rpsA 1834069 c.528G>C synonymous_variant 0.11
rpsA 1834213 c.672G>C synonymous_variant 0.33
rpsA 1834231 c.690T>C synonymous_variant 0.33
rpsA 1834234 c.693G>C synonymous_variant 0.33
rpsA 1834240 c.699T>C synonymous_variant 0.33
rpsA 1834249 c.708T>C synonymous_variant 0.4
rpsA 1834261 c.720A>G synonymous_variant 0.33
rpsA 1834264 c.723G>C synonymous_variant 0.29
rpsA 1834279 c.738C>T synonymous_variant 0.29
rpsA 1834348 c.807T>C synonymous_variant 0.12
tlyA 1918576 p.Arg213Trp missense_variant 0.18
ndh 2102863 c.180C>T synonymous_variant 0.22
ndh 2103202 c.-160C>A upstream_gene_variant 0.4
katG 2154255 c.1857C>T synonymous_variant 0.17
katG 2154938 p.Arg392Trp missense_variant 0.15
katG 2154989 p.Pro375Ser missense_variant 0.17
katG 2155104 c.1008G>T synonymous_variant 0.13
katG 2155493 p.Asp207Tyr missense_variant 0.22
katG 2155550 p.Val188Ile missense_variant 0.14
katG 2155917 c.195C>G synonymous_variant 0.12
katG 2156292 c.-181G>T upstream_gene_variant 0.29
PPE35 2168055 p.Pro853Gln missense_variant 0.14
PPE35 2168403 p.Pro737Gln missense_variant 0.17
PPE35 2168777 c.1836C>A synonymous_variant 0.13
PPE35 2168898 p.Ala572Asp missense_variant 0.22
PPE35 2169284 p.Tyr443* stop_gained 0.29
PPE35 2169317 p.Phe432Leu missense_variant 0.22
Rv1979c 2222845 p.Gly107Val missense_variant 0.14
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.18
pncA 2289399 c.-158C>A upstream_gene_variant 0.18
pncA 2289715 c.-474C>A upstream_gene_variant 0.33
pncA 2290056 c.-815C>A upstream_gene_variant 0.2
kasA 2519349 p.Ala412Val missense_variant 0.18
eis 2714759 p.Arg192Ser missense_variant 0.29
eis 2715268 p.Ala22Asp missense_variant 0.18
eis 2715292 p.Pro14Leu missense_variant 0.18
folC 2746178 p.Thr474Asn missense_variant 0.17
folC 2746648 c.951G>T synonymous_variant 0.14
pepQ 2859906 p.Gln171His missense_variant 0.13
Rv2752c 3064588 p.Arg535His missense_variant 0.2
Rv2752c 3064764 c.1428C>A synonymous_variant 0.17
Rv2752c 3064802 p.Glu464Lys missense_variant 0.17
Rv2752c 3065521 p.Arg224Leu missense_variant 0.13
thyA 3074113 p.Arg120Leu missense_variant 0.13
ald 3086934 p.Ala39Thr missense_variant 0.15
ald 3087571 p.Ser251* stop_gained 0.25
Rv3083 3448655 p.Pro51Gln missense_variant 0.25
Rv3083 3449867 p.Gly455Val missense_variant 0.13
fprA 3474323 p.Ala106Glu missense_variant 0.22
fprA 3475191 p.Cys395* stop_gained 0.17
whiB7 3568683 c.-4G>C upstream_gene_variant 0.29
whiB7 3568859 c.-180G>T upstream_gene_variant 0.15
fbiA 3640387 c.-156G>T upstream_gene_variant 0.18
fbiA 3640685 p.Gly48Val missense_variant 0.14
fbiA 3641077 p.Gln179Lys missense_variant 0.29
fbiB 3641609 c.75C>T synonymous_variant 0.2
fbiB 3641769 p.Glu79* stop_gained 0.15
fbiB 3642787 p.Trp418Leu missense_variant 0.17
alr 3840398 c.1023C>A synonymous_variant 0.13
alr 3840883 p.Arg180Cys missense_variant 0.22
rpoA 3877560 c.948C>T synonymous_variant 0.14
rpoA 3877569 p.Pro313Ala missense_variant 0.13
rpoA 3877584 c.924C>G synonymous_variant 0.12
rpoA 3877587 c.921A>G synonymous_variant 0.13
rpoA 3877593 p.Gly305Cys missense_variant 0.12
rpoA 3877617 c.891G>C synonymous_variant 0.16
rpoA 3877638 c.870T>G synonymous_variant 0.13
rpoA 3877656 c.852T>C synonymous_variant 0.17
rpoA 3877662 c.846C>T synonymous_variant 0.13
rpoA 3877665 c.843C>G synonymous_variant 0.13
rpoA 3877668 c.840A>G synonymous_variant 0.13
rpoA 3877674 c.834C>T synonymous_variant 0.15
rpoA 3877679 p.Ala277Ser missense_variant 0.15
rpoA 3877686 c.822A>G synonymous_variant 0.15
rpoA 3877692 c.816G>C synonymous_variant 0.16
rpoA 3877704 c.804G>T synonymous_variant 0.16
rpoA 3877728 c.780C>G synonymous_variant 0.11
rpoA 3877734 c.774G>C synonymous_variant 0.11
rpoA 3877737 c.771G>C synonymous_variant 0.11
rpoA 3877743 c.765T>C synonymous_variant 0.11
rpoA 3877764 c.744C>G synonymous_variant 0.11
rpoA 3877770 c.738A>G synonymous_variant 0.12
rpoA 3877773 c.735G>C synonymous_variant 0.12
rpoA 3877776 c.732T>C synonymous_variant 0.13
rpoA 3877785 c.723C>G synonymous_variant 0.17
rpoA 3877836 c.672A>G synonymous_variant 0.11
rpoA 3877856 c.652T>C synonymous_variant 0.11
rpoA 3877875 c.633T>C synonymous_variant 0.1
rpoA 3877887 c.621G>C synonymous_variant 0.1
rpoA 3878384 p.Leu42Met missense_variant 0.15
clpC1 4038301 p.Val802Phe missense_variant 0.13
clpC1 4038674 c.2031C>T synonymous_variant 0.12
clpC1 4039039 p.Gly556Cys missense_variant 0.18
clpC1 4039157 p.Lys516Asn missense_variant 0.17
clpC1 4039391 c.1314T>G synonymous_variant 0.1
clpC1 4039397 c.1308A>G synonymous_variant 0.11
clpC1 4039409 c.1296T>C synonymous_variant 0.13
clpC1 4039412 c.1293T>G synonymous_variant 0.13
clpC1 4039415 p.Glu430Asp missense_variant 0.14
clpC1 4039430 c.1275T>C synonymous_variant 0.15
clpC1 4039686 p.Arg340His missense_variant 0.12
clpC1 4039931 c.774T>C synonymous_variant 0.2
clpC1 4039934 c.771G>C synonymous_variant 0.17
clpC1 4039937 c.768G>C synonymous_variant 0.18
clpC1 4039946 c.759A>C synonymous_variant 0.17
clpC1 4039949 c.756G>C synonymous_variant 0.15
clpC1 4039952 c.753T>C synonymous_variant 0.15
clpC1 4039978 p.Lys243Glu missense_variant 0.12
clpC1 4039979 c.726C>G synonymous_variant 0.12
clpC1 4039991 c.714G>C synonymous_variant 0.13
clpC1 4040015 c.690G>C synonymous_variant 0.13
clpC1 4040021 c.684A>C synonymous_variant 0.13
clpC1 4040024 c.681A>G synonymous_variant 0.13
clpC1 4040030 c.675C>G synonymous_variant 0.13
clpC1 4040033 c.672G>C synonymous_variant 0.13
clpC1 4040057 c.648C>T synonymous_variant 0.18
clpC1 4040562 p.Ser48* stop_gained 0.22
clpC1 4040715 c.-11G>T upstream_gene_variant 0.4
clpC1 4040895 c.-191C>T upstream_gene_variant 0.14
panD 4044241 p.Thr14Met missense_variant 0.14
embC 4240181 p.Ser107Pro missense_variant 0.12
embC 4240745 p.Gly295Cys missense_variant 0.29
embC 4240964 p.Gly368Arg missense_variant 0.13
embC 4241168 p.Leu436Met missense_variant 0.12
embC 4242113 p.Leu751Met missense_variant 0.12
embA 4243307 c.75G>T synonymous_variant 0.14
embB 4249042 c.2529G>A synonymous_variant 0.13
embB 4249366 p.Glu951Asp missense_variant 0.14
aftB 4267622 c.1215G>T synonymous_variant 0.13
aftB 4268615 c.222C>T synonymous_variant 0.13
ubiA 4269580 p.Pro85His missense_variant 0.18
ubiA 4269585 p.Glu83Asp missense_variant 0.17
ubiA 4269634 p.Ser67Leu missense_variant 0.33
ethA 4326046 p.Glu476Asp missense_variant 0.29
ethA 4326547 p.Lys309Asn missense_variant 0.2
ethA 4326740 p.Arg245His missense_variant 0.14
ethR 4326922 c.-627G>A upstream_gene_variant 0.2
ethR 4327018 c.-531G>T upstream_gene_variant 0.15
ethR 4327072 c.-477G>T upstream_gene_variant 0.15
ethR 4327444 c.-105C>A upstream_gene_variant 0.18
whiB6 4338343 p.Trp60* stop_gained 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 0.17