TB-Profiler result

Run: SRR8692807
Summary

Run ID: SRR8692807

Sample name:

Date: 13-08-2023 19:18:50

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 1.0 linezolid
pncA 2288784 p.Thr153Asn missense_variant 0.15 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5059 c.-181G>T upstream_gene_variant 0.2
gyrB 5080 c.-160G>T upstream_gene_variant 0.2
gyrB 5236 c.-4G>T upstream_gene_variant 0.2
gyrB 5270 p.Glu11* stop_gained 0.18
gyrB 5954 p.Glu239Lys missense_variant 0.18
gyrB 6178 c.939C>T synonymous_variant 0.15
gyrB 6196 c.957C>G synonymous_variant 0.2
gyrB 6202 c.963C>G synonymous_variant 0.2
gyrB 6203 p.Ser322Ala missense_variant 0.2
gyrB 6214 c.975G>C synonymous_variant 0.17
gyrB 6215 p.Ser326Thr missense_variant 0.17
gyrB 6223 c.984G>C synonymous_variant 0.18
gyrB 6242 p.Arg335Lys missense_variant 0.17
gyrB 6250 c.1011A>G synonymous_variant 0.18
gyrB 6253 c.1014G>C synonymous_variant 0.18
gyrB 6713 p.Arg492Ser missense_variant 0.17
gyrA 7560 p.His87Asn missense_variant 0.14
gyrA 7585 p.Ser95Thr missense_variant 0.21
gyrA 7657 p.Pro119Gln missense_variant 0.19
gyrA 8090 c.789C>G synonymous_variant 0.33
gyrA 8096 c.795T>G synonymous_variant 0.4
gyrA 8099 c.798T>C synonymous_variant 0.4
gyrA 8106 p.Leu269Ile missense_variant 0.29
gyrA 8129 c.828T>C synonymous_variant 0.22
gyrA 8135 c.834C>G synonymous_variant 0.2
gyrA 8270 c.969G>T synonymous_variant 0.14
gyrA 8285 c.984C>T synonymous_variant 0.17
fgd1 491685 c.903G>T synonymous_variant 0.17
ccsA 620427 c.537C>A synonymous_variant 0.17
ccsA 620580 p.Tyr230* stop_gained 0.13
rpoB 759988 p.Ser61* stop_gained 0.17
rpoB 760018 p.Arg71Leu missense_variant 0.18
rpoB 760082 c.276C>T synonymous_variant 0.15
rpoB 760091 c.285G>C synonymous_variant 0.17
rpoB 760101 c.295T>C synonymous_variant 0.17
rpoB 760104 c.298_300delTCGinsAGC synonymous_variant 0.17
rpoB 760112 c.306T>C synonymous_variant 0.17
rpoB 760118 c.312T>G synonymous_variant 0.17
rpoB 760121 c.315T>C synonymous_variant 0.17
rpoB 760130 p.Asp108Glu missense_variant 0.18
rpoB 760139 c.333A>G synonymous_variant 0.2
rpoB 760142 c.336C>G synonymous_variant 0.2
rpoB 760145 c.339C>G synonymous_variant 0.2
rpoB 760172 c.366G>C synonymous_variant 0.25
rpoB 760181 c.375T>G synonymous_variant 0.25
rpoB 760184 c.378A>G synonymous_variant 0.25
rpoB 760502 c.696C>G synonymous_variant 0.23
rpoB 760508 c.702G>C synonymous_variant 0.25
rpoB 760511 c.705G>C synonymous_variant 0.23
rpoB 760522 p.Ser239Asn missense_variant 0.29
rpoB 760532 c.726T>C synonymous_variant 0.29
rpoB 760535 c.729C>G synonymous_variant 0.29
rpoB 760541 c.735G>C synonymous_variant 0.31
rpoB 760547 c.741G>C synonymous_variant 0.27
rpoB 760561 c.757_758delCG frameshift_variant 0.33
rpoB 760567 p.Ser254Trp missense_variant 0.33
rpoB 760568 c.762_763insGC frameshift_variant 0.33
rpoB 760591 p.Val262Ala missense_variant 0.33
rpoB 760601 c.795C>T synonymous_variant 0.27
rpoB 760611 c.805T>C synonymous_variant 0.22
rpoB 760625 c.819C>G synonymous_variant 0.21
rpoB 760634 c.828T>C synonymous_variant 0.17
rpoC 762647 c.-723G>T upstream_gene_variant 0.18
rpoB 763311 p.Glu1169* stop_gained 0.33
rpoC 763357 c.-13G>T upstream_gene_variant 0.29
rpoC 763660 c.291T>G synonymous_variant 0.13
rpoC 763696 c.327T>C synonymous_variant 0.13
rpoC 763718 p.Leu117Met missense_variant 0.14
rpoC 764084 p.Asn239Asp missense_variant 0.11
rpoC 764098 c.729A>G synonymous_variant 0.11
rpoC 764126 p.Thr253Ala missense_variant 0.11
rpoC 764131 c.762T>C synonymous_variant 0.11
rpoC 764143 c.774G>C synonymous_variant 0.11
rpoC 764153 p.Gln262Lys missense_variant 0.13
rpoC 764161 c.792G>C synonymous_variant 0.13
rpoC 764431 c.1062G>C synonymous_variant 0.12
rpoC 764434 c.1065A>G synonymous_variant 0.11
rpoC 764452 c.1083T>C synonymous_variant 0.11
rpoC 764458 c.1089G>C synonymous_variant 0.11
rpoC 764485 c.1116G>C synonymous_variant 0.19
rpoC 764491 c.1122G>T synonymous_variant 0.24
rpoC 764497 c.1128A>G synonymous_variant 0.24
rpoC 764500 c.1131C>G synonymous_variant 0.24
rpoC 764521 c.1152T>C synonymous_variant 0.17
rpoC 764527 c.1158C>T synonymous_variant 0.17
rpoC 764530 c.1161C>T synonymous_variant 0.17
rpoC 764539 c.1170C>G synonymous_variant 0.17
rpoC 764548 c.1179G>T synonymous_variant 0.16
rpoC 764575 c.1206T>G synonymous_variant 0.12
rpoC 764650 c.1281G>T synonymous_variant 0.2
rpoC 764662 c.1293G>C synonymous_variant 0.19
rpoC 764677 c.1308C>G synonymous_variant 0.17
rpoC 764719 c.1350G>A synonymous_variant 0.15
rpoC 764746 c.1377G>T synonymous_variant 0.18
rpoC 764752 c.1383G>C synonymous_variant 0.16
rpoC 764758 c.1389C>G synonymous_variant 0.14
rpoC 764764 c.1395T>C synonymous_variant 0.15
rpoC 765772 c.2403C>G synonymous_variant 0.15
rpoC 765778 c.2409C>G synonymous_variant 0.17
rpoC 765779 p.Asp804Lys missense_variant 0.17
rpoC 765800 p.Phe811Leu missense_variant 0.15
rpoC 765811 c.2442T>C synonymous_variant 0.14
rpoC 765814 c.2445A>C synonymous_variant 0.13
rpoC 765820 c.2451G>C synonymous_variant 0.13
rpoC 765823 c.2454C>G synonymous_variant 0.13
rpoC 765826 c.2457T>C synonymous_variant 0.13
rpoC 765835 c.2466C>T synonymous_variant 0.14
rpoC 765861 p.Phe831Tyr missense_variant 0.2
rpoC 765875 p.Val836Ile missense_variant 0.2
rpoC 765886 c.2517C>G synonymous_variant 0.21
rpoC 765892 c.2523T>C synonymous_variant 0.21
rpoC 765898 c.2529C>T synonymous_variant 0.21
rpoC 766525 c.3156G>T synonymous_variant 0.13
rpoC 766579 c.3210C>T synonymous_variant 0.2
rpoC 766690 c.3321G>C synonymous_variant 0.17
rpoC 766702 c.3333G>C synonymous_variant 0.15
rpoC 766711 c.3342C>T synonymous_variant 0.14
rpoC 766712 p.Ser1115Ala missense_variant 0.14
rpoC 766720 c.3351C>T synonymous_variant 0.14
rpoC 766726 c.3357T>C synonymous_variant 0.15
rpoC 766738 c.3369G>T synonymous_variant 0.14
rpoC 766750 c.3381C>G synonymous_variant 0.17
rpoC 766765 c.3396A>C synonymous_variant 0.2
rpoC 766771 c.3402G>C synonymous_variant 0.13
rpoC 766774 c.3405T>C synonymous_variant 0.13
rpoC 766775 p.Arg1136Lys missense_variant 0.13
rpoC 766798 c.3429C>G synonymous_variant 0.17
rpoC 766804 c.3435A>G synonymous_variant 0.17
rpoC 767011 c.3642G>A synonymous_variant 0.12
mmpL5 776202 p.Gly760Val missense_variant 0.12
mmpL5 776445 p.Ala679Asp missense_variant 0.33
mmpL5 776806 p.Gly559Trp missense_variant 0.2
mmpL5 777001 p.His494Tyr missense_variant 0.25
mmpS5 778837 p.Phe23Leu missense_variant 0.25
mmpL5 778852 c.-372C>A upstream_gene_variant 0.25
mmpL5 779275 c.-795G>T upstream_gene_variant 0.12
mmpL5 779316 c.-836C>T upstream_gene_variant 0.12
rpsL 781552 c.-8G>T upstream_gene_variant 0.12
rpsL 781616 c.57C>A synonymous_variant 0.22
rpsL 781748 c.189C>A synonymous_variant 0.12
rpsL 781859 c.300T>C synonymous_variant 0.2
rpsL 781868 c.309T>C synonymous_variant 0.25
rpsL 781871 c.312G>C synonymous_variant 0.29
rpsL 781892 c.333A>G synonymous_variant 0.4
rpsL 781901 c.342C>T synonymous_variant 0.5
rpsL 781916 c.357T>G synonymous_variant 0.33
rpsL 781929 p.Gly124Ser missense_variant 0.2
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.2
fbiC 1303226 p.Arg99Leu missense_variant 0.15
fbiC 1304976 p.Lys682Asn missense_variant 0.17
fbiC 1305250 c.2320C>A synonymous_variant 0.15
Rv1258c 1406686 p.Val219Ile missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471717 n.-129G>T upstream_gene_variant 0.29
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.67
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.67
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.67
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.67
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.67
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.67
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.67
rrs 1472179 n.334C>A non_coding_transcript_exon_variant 0.15
rrs 1472303 n.458G>T non_coding_transcript_exon_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.75
rrs 1472723 n.878G>T non_coding_transcript_exon_variant 0.25
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.33
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.43
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.43
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.43
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.43
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.43
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.29
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.43
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.43
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.43
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.6
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.5
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.5
rrs 1473162 n.1317C>T non_coding_transcript_exon_variant 0.29
rrl 1473697 n.40C>T non_coding_transcript_exon_variant 0.33
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.33
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.4
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.33
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.29
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.29
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.25
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.43
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.33
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.33
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.33
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.22
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.25
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.25
rrl 1474709 n.1053delT non_coding_transcript_exon_variant 0.25
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.25
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.33
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.33
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.33
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 0.25
rrl 1475257 n.1600C>A non_coding_transcript_exon_variant 0.29
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.6
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.82
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.82
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.82
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.82
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.82
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.82
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.75
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.3
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.27
rrl 1475993 n.2336C>A non_coding_transcript_exon_variant 0.18
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.25
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.33
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.33
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.33
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.33
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.31
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.31
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.33
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.33
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.43
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.8
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.78
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.78
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.78
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.78
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.82
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.82
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.82
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.88
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.88
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.88
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.75
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.75
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.67
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.57
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.5
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.5
rrl 1476415 n.2758C>A non_coding_transcript_exon_variant 0.22
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.23
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.45
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.5
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.43
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.43
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.4
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.4
rpsA 1833616 c.75A>G synonymous_variant 0.12
rpsA 1833619 c.78A>C synonymous_variant 0.12
rpsA 1833625 c.84A>G synonymous_variant 0.11
rpsA 1833628 c.87G>C synonymous_variant 0.11
rpsA 1833676 c.135A>G synonymous_variant 0.24
rpsA 1833679 c.138G>C synonymous_variant 0.22
rpsA 1833685 c.144G>T synonymous_variant 0.22
rpsA 1833694 c.153G>T synonymous_variant 0.24
rpsA 1833697 c.156C>G synonymous_variant 0.25
rpsA 1833703 c.162C>T synonymous_variant 0.25
rpsA 1833709 c.168C>T synonymous_variant 0.25
rpsA 1833727 c.186G>A synonymous_variant 0.2
rpsA 1833734 p.Ala65Ser missense_variant 0.24
rpsA 1833745 c.204G>C synonymous_variant 0.2
rpsA 1833760 c.219C>T synonymous_variant 0.17
rpsA 1833787 c.246C>G synonymous_variant 0.14
rpsA 1833790 c.249T>C synonymous_variant 0.13
rpsA 1833793 c.252C>T synonymous_variant 0.13
rpsA 1833802 c.261A>G synonymous_variant 0.12
rpsA 1834069 c.528G>C synonymous_variant 0.14
rpsA 1834096 c.555G>C synonymous_variant 0.18
rpsA 1834099 c.558C>G synonymous_variant 0.17
rpsA 1834102 c.561T>C synonymous_variant 0.15
rpsA 1834108 c.567C>G synonymous_variant 0.2
rpsA 1834135 c.594G>T synonymous_variant 0.17
rpsA 1834231 c.690T>C synonymous_variant 0.2
rpsA 1834234 c.693G>C synonymous_variant 0.2
rpsA 1834240 c.699T>C synonymous_variant 0.27
rpsA 1834249 c.708T>C synonymous_variant 0.18
rpsA 1834261 c.720A>G synonymous_variant 0.2
rpsA 1834264 c.723G>C synonymous_variant 0.2
rpsA 1834279 c.738C>T synonymous_variant 0.18
rpsA 1834294 c.753G>C synonymous_variant 0.15
rpsA 1834298 p.Gln253Thr missense_variant 0.15
rpsA 1834303 c.762T>C synonymous_variant 0.17
rpsA 1834306 c.765T>C synonymous_variant 0.15
rpsA 1834451 c.910T>C synonymous_variant 0.16
rpsA 1834456 c.915T>G synonymous_variant 0.14
rpsA 1834468 c.927A>G synonymous_variant 0.14
rpsA 1834489 c.948T>C synonymous_variant 0.14
rpsA 1834513 c.972C>G synonymous_variant 0.14
rpsA 1834520 p.Ala327Ser missense_variant 0.15
rpsA 1834528 c.987T>C synonymous_variant 0.15
rpsA 1834540 c.999G>C synonymous_variant 0.18
rpsA 1834543 c.1002C>G synonymous_variant 0.19
rpsA 1834546 c.1005T>C synonymous_variant 0.21
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.3
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.3
rpsA 1834738 p.Glu399Asp missense_variant 0.12
ndh 2102154 p.Leu297Phe missense_variant 0.12
ndh 2102790 p.Leu85Met missense_variant 0.12
katG 2153945 p.Asp723Tyr missense_variant 0.17
katG 2154426 p.Asn562Lys missense_variant 0.12
katG 2155473 p.Lys213Asn missense_variant 0.12
katG 2155495 p.Gly206Val missense_variant 0.12
katG 2155658 p.Lys152Glu missense_variant 0.11
katG 2155956 c.156G>T synonymous_variant 0.12
katG 2156069 p.Ala15Ser missense_variant 0.12
katG 2156074 p.Thr13Asn missense_variant 0.12
PPE35 2167661 p.Ser984Arg missense_variant 0.2
PPE35 2168176 p.Gln813Lys missense_variant 0.12
PPE35 2168684 c.1929C>A synonymous_variant 0.17
PPE35 2169135 p.Pro493Gln missense_variant 0.18
PPE35 2170633 c.-21C>A upstream_gene_variant 0.15
PPE35 2170691 c.-79C>A upstream_gene_variant 0.18
Rv1979c 2221806 c.1359G>A synonymous_variant 0.25
Rv1979c 2221872 c.1293C>A synonymous_variant 0.33
Rv1979c 2222049 c.1116G>T synonymous_variant 0.15
Rv1979c 2223097 p.Gly23Val missense_variant 0.25
Rv1979c 2223102 p.Met21Ile missense_variant 0.25
Rv1979c 2223199 c.-35C>A upstream_gene_variant 0.29
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.22
pncA 2289476 c.-235G>T upstream_gene_variant 0.15
folC 2747224 c.375G>T synonymous_variant 0.12
pepQ 2859393 p.Leu342Phe missense_variant 0.22
pepQ 2859404 p.Glu339* stop_gained 0.22
pepQ 2859438 c.981T>C synonymous_variant 0.17
pepQ 2859453 c.966G>T synonymous_variant 0.17
pepQ 2859465 c.954G>T synonymous_variant 0.18
Rv2752c 3065073 c.1119C>G synonymous_variant 0.11
Rv2752c 3065076 c.1116T>G synonymous_variant 0.11
Rv2752c 3065085 c.1105_1107delAGGinsCGC synonymous_variant 0.12
Rv2752c 3065088 c.1104A>G synonymous_variant 0.12
Rv2752c 3065097 c.1095C>T synonymous_variant 0.12
Rv2752c 3065106 c.1086C>G synonymous_variant 0.14
Rv2752c 3065109 c.1081_1083delAGAinsCGG synonymous_variant 0.14
Rv2752c 3065120 p.Ile358Val missense_variant 0.13
Rv2752c 3065130 c.1062A>G synonymous_variant 0.12
Rv2752c 3065133 c.1059T>C synonymous_variant 0.12
Rv2752c 3065142 c.1050A>G synonymous_variant 0.12
Rv2752c 3065697 p.Ile165Val missense_variant 0.12
Rv2752c 3065700 c.492C>G synonymous_variant 0.13
Rv2752c 3065703 c.489A>G synonymous_variant 0.12
Rv2752c 3065717 p.Tyr159His missense_variant 0.12
Rv2752c 3065727 c.465C>G synonymous_variant 0.13
Rv2752c 3065732 c.460T>C synonymous_variant 0.13
Rv2752c 3065742 p.Thr150Ile missense_variant 0.14
Rv2752c 3065745 c.447C>G synonymous_variant 0.15
Rv2752c 3065748 c.444T>C synonymous_variant 0.16
Rv2752c 3065757 c.435C>G synonymous_variant 0.18
Rv2752c 3065769 c.423C>T synonymous_variant 0.18
Rv2752c 3065775 c.417T>C synonymous_variant 0.18
Rv2752c 3065781 c.411C>G synonymous_variant 0.18
Rv2752c 3065785 c.404_406delGGC disruptive_inframe_deletion 0.18
thyX 3067502 c.444C>A synonymous_variant 0.12
thyA 3074193 c.279C>A synonymous_variant 0.15
ald 3086819 c.-1C>A upstream_gene_variant 0.33
ald 3086868 p.Ala17Thr missense_variant 0.25
ald 3086948 c.129G>T synonymous_variant 0.25
ald 3087390 p.Gly191Cys missense_variant 0.14
ald 3087444 p.Ala209Ser missense_variant 0.14
ald 3087483 p.Ala222Ser missense_variant 0.14
ald 3087539 c.720G>T synonymous_variant 0.17
Rv3083 3449688 p.Trp395Cys missense_variant 0.12
fprA 3474376 p.Ala124Ser missense_variant 0.17
fbiA 3640362 c.-181C>T upstream_gene_variant 0.13
fbiA 3640397 c.-146G>T upstream_gene_variant 0.12
fbiA 3640429 c.-114C>A upstream_gene_variant 0.15
fbiB 3641034 c.-501C>A upstream_gene_variant 0.14
fbiB 3642107 p.Glu191Asp missense_variant 0.14
alr 3840231 p.Arg397Leu missense_variant 0.13
alr 3840511 p.Asp304Tyr missense_variant 0.14
alr 3840520 p.Ala301Ser missense_variant 0.13
alr 3840596 p.Met275Ile missense_variant 0.2
alr 3840637 p.Pro262Thr missense_variant 0.15
alr 3841073 c.348C>A synonymous_variant 0.14
rpoA 3877584 c.924C>A synonymous_variant 0.18
rpoA 3877601 p.Gln303Lys missense_variant 0.22
rpoA 3878369 p.Pro47Thr missense_variant 0.17
rpoA 3878384 p.Leu42Met missense_variant 0.18
rpoA 3878398 p.Ser37* stop_gained 0.22
ddn 3987245 p.Gln134His missense_variant 0.25
clpC1 4038551 c.2154C>G synonymous_variant 0.11
clpC1 4038605 c.2100G>A synonymous_variant 0.12
clpC1 4038613 p.Asn698His missense_variant 0.12
clpC1 4038620 p.Gln695His missense_variant 0.12
clpC1 4038623 c.2082A>G synonymous_variant 0.12
clpC1 4038640 p.Asp689Asn missense_variant 0.17
clpC1 4038647 c.2058T>C synonymous_variant 0.17
clpC1 4038650 c.2055C>T synonymous_variant 0.17
clpC1 4038658 p.Lys683Gln missense_variant 0.15
clpC1 4038661 p.Ser682Thr missense_variant 0.15
clpC1 4038662 c.2043T>C synonymous_variant 0.15
clpC1 4038671 c.2034T>G synonymous_variant 0.19
clpC1 4038677 p.Pro676Ala missense_variant 0.26
clpC1 4038683 c.2022T>C synonymous_variant 0.26
clpC1 4038704 c.2001T>C synonymous_variant 0.2
clpC1 4038707 c.1998C>G synonymous_variant 0.2
clpC1 4038710 c.1995G>C synonymous_variant 0.2
clpC1 4038713 c.1992T>C synonymous_variant 0.2
clpC1 4038755 c.1950G>C synonymous_variant 0.25
clpC1 4038773 c.1932T>C synonymous_variant 0.25
clpC1 4038779 c.1926C>G synonymous_variant 0.2
clpC1 4038782 c.1923G>C synonymous_variant 0.19
clpC1 4038790 c.1915C>T synonymous_variant 0.2
clpC1 4038795 p.Ser637Thr missense_variant 0.2
clpC1 4038812 c.1893T>C synonymous_variant 0.21
clpC1 4038815 c.1890G>T synonymous_variant 0.15
clpC1 4039097 c.1608G>C synonymous_variant 0.1
clpC1 4039183 c.1522T>C synonymous_variant 0.2
clpC1 4039187 c.1518G>C synonymous_variant 0.2
clpC1 4039208 c.1497C>G synonymous_variant 0.19
clpC1 4039226 c.1479T>C synonymous_variant 0.15
clpC1 4039262 c.1443C>T synonymous_variant 0.17
clpC1 4039274 c.1431G>C synonymous_variant 0.17
clpC1 4039277 c.1428C>A synonymous_variant 0.17
clpC1 4039286 c.1419T>C synonymous_variant 0.15
clpC1 4039289 c.1416T>C synonymous_variant 0.17
clpC1 4039292 c.1413C>T synonymous_variant 0.17
clpC1 4039295 c.1410A>C synonymous_variant 0.17
clpC1 4039298 c.1407T>C synonymous_variant 0.17
clpC1 4039310 c.1395A>G synonymous_variant 0.17
clpC1 4039313 c.1392C>G synonymous_variant 0.17
clpC1 4039319 c.1386T>C synonymous_variant 0.15
clpC1 4039328 c.1377A>G synonymous_variant 0.17
clpC1 4040450 c.255A>G synonymous_variant 0.15
clpC1 4040459 c.246C>G synonymous_variant 0.15
clpC1 4040462 c.243C>T synonymous_variant 0.14
clpC1 4040465 c.240T>C synonymous_variant 0.14
clpC1 4040471 c.234T>C synonymous_variant 0.13
clpC1 4040480 c.225T>C synonymous_variant 0.15
clpC1 4040522 c.183T>C synonymous_variant 0.11
panD 4044060 c.222C>A synonymous_variant 0.25
embA 4243771 p.Gly180Val missense_variant 0.12
embB 4247454 p.Gly314Val missense_variant 0.12
embB 4248510 p.Ile666Thr missense_variant 0.22
aftB 4267393 p.Pro482Thr missense_variant 0.17
aftB 4267413 p.Gly475Asp missense_variant 0.17
ethA 4326307 c.1167C>A synonymous_variant 0.29
ethA 4326482 p.Arg331Leu missense_variant 0.25
ethR 4327843 p.Arg99Ser missense_variant 0.12
whiB6 4338495 c.27T>C synonymous_variant 0.22
whiB6 4338595 c.-75delG upstream_gene_variant 0.25
gid 4408215 c.-13G>A upstream_gene_variant 0.13