SRR20969731
|
Other
|
lineage2.2.1
|
None
|
SRR10315701
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
ERR3275709
|
HR-TB
|
lineage3
|
nl
|
ERR867575
|
Other
|
lineage4.9
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6153081
|
HR-TB
|
lineage1.2.1.2
|
ca
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4769408
|
Other
|
La1.3
|
None
|
ERR4831617
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9786705
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR7070369
|
Other
|
lineage1.2.2.2
|
None
|
ERR2229234
|
Sensitive
|
lineage4.8
|
None
|
ERR5917972
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR323107
|
Sensitive
|
lineage4.9
|
None
|
SRR5341300
|
HR-TB
|
lineage4.9
|
None
|
SRR3601585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR363479
|
Sensitive
|
lineage4.9
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
ERR4769506
|
Sensitive
|
lineage4.9
|
None
|
SRR6045603
|
Other
|
lineage4.1.1.3
|
None
|
SRR5818460
|
Other
|
lineage4.9
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
ERR4596904
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
SRR3675235
|
Sensitive
|
lineage4.9
|
None
|
ERR4816964
|
Sensitive
|
lineage4.9
|
None
|
ERR736856
|
Sensitive
|
lineage4.9
|
None
|
SRR14782054
|
Other
|
lineage4.9
|
None
|
SRR10809074
|
Sensitive
|
lineage4.9
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR4818561
|
Sensitive
|
lineage4.9
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
ERR349265
|
Other
|
lineage4.9
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
ERR373945
|
Sensitive
|
lineage4.9
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
ERR363426
|
Sensitive
|
lineage4.9
|
None
|
SRR1062880
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
ERR5087596
|
Other
|
La1.8.1
|
None
|
ERR4821655
|
HR-TB
|
lineage4.9
|
None
|
SRR8692887
|
Other
|
|
None
|
ERR10796615
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
SRR3675389
|
Other
|
lineage4.9
|
None
|
SRR5818386
|
Other
|
lineage4.9
|
None
|
SRR26159043
|
Other
|
lineage4.9
|
None
|
ERR4819051
|
Sensitive
|
lineage4.9
|
None
|
SRR3675548
|
Sensitive
|
lineage4.9
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR363449
|
Sensitive
|
lineage4.9
|
None
|
ERR4769507
|
Sensitive
|
lineage4.9
|
None
|
ERR4816548
|
HR-TB
|
lineage4.5
|
None
|
SRR26159063
|
RR-TB
|
lineage4.9
|
None
|
SRR5818426
|
Other
|
lineage4.9
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
SRR13888750
|
Other
|
La2
|
None
|
ERR4821811
|
Sensitive
|
lineage4.9
|
None
|
SRR6982141
|
Other
|
lineage4.3.3
|
None
|
ERR4769495
|
Other
|
La1.3
|
None
|
ERR4769457
|
Other
|
lineage4.9
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR4816470
|
HR-TB
|
lineage3
|
None
|
SRR7645901
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1175508
|
Sensitive
|
lineage4.9
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4818570
|
Other
|
lineage4.3.3
|
None
|
ERR1750885
|
Sensitive
|
lineage2.2.1
|
zw
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
ERR11465801
|
Other
|
lineage4.3.4.1
|
None
|
SRR7496471
|
Sensitive
|
lineage4
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR867572
|
Other
|
lineage4.9
|
None
|
ERR2041726
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMEA3450033
|
Other
|
lineage4.8
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3675509
|
Other
|
lineage4.9
|
None
|
ERR10796596
|
Other
|
lineage4.9
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
ERR3276144
|
Other
|
lineage3
|
nl
|
SRR5818464
|
Other
|
lineage4.9
|
None
|
SRR3675260
|
Sensitive
|
lineage4.9
|
None
|
DRR184629
|
Other
|
lineage2.2.1
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
ERR363509
|
Sensitive
|
lineage4.9
|
None
|
SRR10808490
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR4769436
|
Other
|
La1.3
|
None
|
SRR5341267
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6982229
|
Sensitive
|
lineage2.2.1
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
ERR5987263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR363499
|
Sensitive
|
lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
ERR4816417
|
Other
|
lineage4.9
|
None
|
ERR11081258
|
Other
|
lineage4.8
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
ERR4769493
|
Other
|
lineage4.9
|
None
|
ERR2446154
|
Sensitive
|
lineage4.4.1.1
|
nl
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
ERR369160
|
Sensitive
|
lineage4.9
|
None
|
SRR6046250
|
Other
|
lineage4.9
|
None
|
ERR363502
|
Other
|
lineage4.9
|
None
|
SRR6832644
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
SRR14782405
|
HR-TB
|
lineage4.9
|
None
|
SRR3675246
|
Other
|
lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
SRR10614047
|
Sensitive
|
lineage4.9
|
None
|
SRR9971065
|
RR-TB
|
lineage2.2.1
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
SRR5341308
|
Sensitive
|
lineage4.9
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
ERR3275615
|
Sensitive
|
lineage4.4.1.1
|
nl
|
ERR363506
|
Sensitive
|
lineage4.9
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR363490
|
Sensitive
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
SRR5818435
|
Sensitive
|
lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2027257
|
Other
|
lineage4.1.2.1
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
ERR3275941
|
RR-TB
|
lineage4.3
|
nl
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
ERR3335798
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR4799547
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10303325
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR363421
|
Sensitive
|
lineage4.9
|
None
|
ERR369161
|
Sensitive
|
lineage4.9
|
None
|
ERR10796620
|
Other
|
lineage4.1.1.1
|
None
|
ERR108125
|
RR-TB
|
lineage4.9
|
None
|
SRR3675514
|
Sensitive
|
lineage4.9
|
None
|
SRR11342682
|
Other
|
lineage4.1.2
|
None
|
SRR5341293
|
Sensitive
|
lineage4.9
|
None
|
SRR5341425
|
Other
|
lineage4.9
|
None
|
ERR216965
|
Sensitive
|
lineage4.9
|
None
|
ERR4798099
|
Other
|
lineage4.9
|
None
|
ERR4817434
|
Other
|
lineage3
|
None
|
SRR7755645
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7131121
|
Other
|
lineage4.3.3
|
None
|
SRR7131147
|
Other
|
lineage4.1.2.1
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
SRR16156775
|
Other
|
lineage4.9
|
None
|
ERR867567
|
RR-TB
|
lineage3
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
ERR9786276
|
Sensitive
|
lineage4.8
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR970443
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR5818399
|
Sensitive
|
lineage4.9
|
None
|
ERR3283014
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR2229198
|
Sensitive
|
lineage4.8
|
None
|
ERR502510
|
Sensitive
|
lineage4.9
|
None
|
ERR3283031
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
SRR12708374
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
SRR12708398
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
ERR4769433
|
RR-TB
|
lineage4.9
|
None
|
ERR4811708
|
HR-TB
|
lineage4
|
None
|
SRR16156817
|
Other
|
lineage4.9
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
ERR2513298
|
Sensitive
|
lineage4.8
|
gb
|
ERR4769525
|
Sensitive
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
ERR6865502
|
Sensitive
|
lineage4
|
None
|
ERR970449
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR8692807
|
Other
|
lineage4.9
|
None
|
ERR10796563
|
Other
|
lineage4.3.3
|
None
|
ERR4818126
|
Other
|
lineage1.2.2
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
ERR3797019
|
Other
|
La1.8.1
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070293
|
Other
|
lineage4.8
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR4816852
|
Other
|
lineage4.9
|
None
|
ERR4816967
|
Other
|
lineage5
|
None
|
ERR978693
|
Other
|
lineage4.8
|
None
|
ERR4812328
|
Other
|
lineage4.3.3
|
pe
|
ERR363474
|
Sensitive
|
lineage4.9
|
None
|
ERR3797063
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
ERR4820723
|
Other
|
lineage4.4.1.1
|
None
|
ERR4178226
|
Sensitive
|
lineage4
|
None
|
ERR4821769
|
Other
|
lineage4.1.2.1
|
None
|
ERR4972567
|
MDR-TB
|
lineage4.3.2
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR6359069
|
Sensitive
|
lineage4.9
|
None
|
ERR10796572
|
Other
|
lineage4.3.4.1;lineage4.9
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR3675209
|
Sensitive
|
lineage4.9
|
None
|
SRR10808399
|
Sensitive
|
lineage4.9
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
ERR502478
|
RR-TB
|
lineage4.9
|
None
|
SRR1184308
|
Sensitive
|
lineage4.9
|
None
|
SRR6044876
|
Sensitive
|
lineage4.9
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
ERR970441
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
SRR3675318
|
Other
|
lineage4.9
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6511621
|
Sensitive
|
lineage4.9
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
SRR5341323
|
Sensitive
|
lineage4.9
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
ERR4820030
|
Other
|
lineage4.9
|
None
|
SRR6855915
|
Sensitive
|
lineage4.9
|
None
|
SRR5818391
|
Other
|
lineage4.9
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5818402
|
Other
|
lineage4.9
|
None
|
SRR5818449
|
MDR-TB
|
lineage4.9
|
None
|
SRR5818462
|
Other
|
lineage4.9
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4829530
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR7069137
|
Other
|
lineage4.8
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
SRR11342643
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR5818397
|
Other
|
lineage4.9
|
None
|
SRR5818448
|
Other
|
lineage4.9
|
None
|
SRR1062920
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
ERR2514430
|
Other
|
lineage3.1.2;lineage4.1.1.3.1
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
ERR3276170
|
Other
|
lineage4.1.2.1
|
nl
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2229366
|
Other
|
lineage4.8
|
None
|
ERR4769552
|
Sensitive
|
La1.3
|
None
|
ERR245794
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4814976
|
Other
|
lineage4.9
|
None
|
ERR4800341
|
Other
|
lineage3
|
None
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
ERR1035122
|
Sensitive
|
lineage4.9
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR9787362
|
Sensitive
|
lineage6
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
SAMN02380982
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4821616
|
Other
|
lineage1.1.3.1
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR363445
|
Other
|
lineage4.9
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
DRR185024
|
Other
|
lineage2.2.2
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7069648
|
Other
|
lineage4.6.2.2
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR4817554
|
Other
|
lineage1.1.1
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR6045158
|
Other
|
lineage4.9
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
ERR1023236
|
Other
|
lineage6.1.3
|
None
|
SRR6045706
|
Sensitive
|
lineage4.9
|
None
|
ERR11465711
|
Other
|
lineage1.2.2.1;lineage4.4.1.1
|
None
|
SRR6044819
|
Sensitive
|
lineage4.9
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR978746
|
RR-TB
|
lineage4.8
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR8975044
|
Other
|
lineage4.1.1.2
|
None
|
ERR4769419
|
Sensitive
|
lineage4.9
|
None
|
SRR6046259
|
Sensitive
|
lineage4.9
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
SRR8758877
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1062928
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
ERR2179695
|
Sensitive
|
lineage4.5
|
None
|
ERR4819864
|
RR-TB
|
lineage1.1.3.1
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
ERR970413
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR037504
|
Other
|
lineage4.9.1
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR349266
|
Sensitive
|
lineage4.9
|
None
|
ERR736834
|
Sensitive
|
lineage4.9
|
None
|
ERR369157
|
Sensitive
|
lineage4.9
|
None
|
ERR373946
|
Sensitive
|
lineage4.9
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
ERR2229147
|
Other
|
lineage4.8
|
None
|
SRR6982246
|
Sensitive
|
lineage4.1.2;lineage4.9
|
None
|
SRR5818408
|
Other
|
lineage4.9
|
None
|
SRR1181130
|
Other
|
lineage4.1.1.3
|
None
|
SRR7645972
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
SRR1062871
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1196478
|
Other
|
lineage4.9
|
None
|
SRR6785281
|
Other
|
lineage4.2.1.1
|
None
|
SRR21469202
|
Other
|
La1.7.1
|
None
|
SRR6982104
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1792012
|
Other
|
La1.8.1
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
ERR212114
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR9971168
|
Other
|
lineage4.3.2.1
|
None
|
SRR1792011
|
Other
|
La1.8.1
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
ERR349296
|
Sensitive
|
lineage4.9
|
None
|
SRR11342655
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992784
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR3797081
|
Sensitive
|
lineage4.9
|
None
|
SRR5341469
|
HR-TB
|
lineage4.9
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
ERR10796577
|
Other
|
lineage4.9
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
SRR18003023
|
Other
|
lineage2.2.1
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1181368
|
Other
|
lineage4.9
|
None
|
SRR7131216
|
Other
|
lineage4.1.2.1
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|
SRR25827682
|
Other
|
|
None
|
SRR1173770
|
Other
|
lineage4.9
|
None
|
ERR234659
|
Other
|
|
None
|
ERR3275996
|
HR-TB
|
lineage4.3.4.1
|
nl
|
ERR369159
|
Sensitive
|
lineage4.9
|
None
|
ERR405209
|
Sensitive
|
La1.7;lineage4.9
|
None
|
SRR1049559
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR11342646
|
HR-TB
|
lineage3
|
None
|
ERR3797079
|
Sensitive
|
lineage4.9
|
None
|
ERR4769418
|
Other
|
La1.2
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
SRR13423546
|
Other
|
lineage4.4.2
|
None
|
SRR1175491
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR7755649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10796629
|
Other
|
lineage4.1;lineage4.9
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
ERR349330
|
Sensitive
|
lineage4.9
|
None
|
ERR363446
|
Sensitive
|
lineage4.9
|
None
|
ERR4815452
|
Other
|
lineage4.3.3
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR12634609
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR19295647
|
Sensitive
|
lineage4.9
|
None
|
SRR2100067
|
Other
|
lineage4.3.3
|
None
|
SRR9971372
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
ERR4797474
|
Sensitive
|
lineage4.9
|
None
|
ERR6866022
|
Other
|
lineage4.8;lineage4.9
|
None
|
SRR12420628
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
SRR19303907
|
Other
|
lineage4.8
|
None
|
SRR5818388
|
Other
|
lineage4.9
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
SRR15508556
|
Other
|
lineage4.3.4.1
|
None
|
SRR1175507
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
ERR9786639
|
Sensitive
|
lineage4.8
|
None
|
SRR16156804
|
Sensitive
|
lineage4.9
|
None
|
SRR1049726
|
Other
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
SRR1175474
|
Other
|
lineage4.9
|
None
|
SRR1181214
|
Other
|
lineage4.9
|
None
|
SRR6045002
|
RR-TB
|
lineage4.9
|
None
|
SRR6045909
|
Other
|
lineage4.8.1
|
None
|
SRR12708406
|
HR-TB
|
lineage2.2.1;lineage4.9
|
None
|
SRR18002981
|
Other
|
lineage2.2.1
|
None
|
SRR5818389
|
Other
|
lineage4.9
|
None
|
SRR6855963
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7646018
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR8692863
|
Other
|
lineage2.2;lineage4
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
ERR2693252
|
Sensitive
|
lineage4.9
|
None
|
SRR6045217
|
Sensitive
|
lineage4.9
|
None
|
SRR1049725
|
Other
|
lineage4.1.2.1;lineage4.4.1
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR867569
|
Other
|
lineage4.9
|
None
|
ERR10796581
|
Other
|
lineage4.1.2
|
None
|
ERR4819579
|
HR-TB
|
lineage4.3.3
|
None
|
ERR5908124
|
Other
|
lineage4.8
|
None
|
ERR502523
|
Other
|
lineage6.3.1
|
None
|
ERR176518
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
SRR13180363
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR1184021
|
Sensitive
|
lineage4.9
|
None
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
ERR349300
|
Sensitive
|
lineage4.9
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
SRR21658550
|
Other
|
lineage1.1.1
|
None
|
ERR323115
|
Sensitive
|
lineage4.9
|
None
|
SRR1202714
|
Sensitive
|
lineage4.9
|
None
|
ERR1750916
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR2446509
|
Other
|
lineage3
|
nl
|
SRR9971150
|
RR-TB
|
lineage4.8.1
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
ERR9787256
|
Other
|
lineage6.1.3
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
SRR25827497
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
SRR11342686
|
MDR-TB
|
lineage4.8
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
ERR4769393
|
Sensitive
|
lineage4.9
|
None
|
SRR11972417
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6981999
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
ERR4797184
|
Sensitive
|
lineage4.9
|
None
|
ERR124636
|
Sensitive
|
lineage4.9
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
SRR12708370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR911930
|
Other
|
lineage4.8
|
None
|
ERR560441
|
Sensitive
|
La1.2.BCG;lineage4.9
|
None
|
ERR6865513
|
Other
|
lineage4.1.2.1
|
None
|
ERR502473
|
RR-TB
|
lineage4.9
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
SRR5341461
|
HR-TB
|
lineage4.9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
ERR349299
|
Other
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
SRR1208872
|
Sensitive
|
lineage4.9
|
None
|
ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11465301
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR11465509
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR751326
|
Other
|
lineage4.9
|
None
|
SRR21764250
|
Other
|
lineage4.9
|
None
|
SRR6045496
|
Other
|
lineage6.1.3
|
None
|
SRR6397815
|
Other
|
lineage4.4.1.1
|
None
|
DRR188519
|
Other
|
lineage4.4.2
|
None
|
SRR20969475
|
Other
|
lineage1.2.1.2
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
ERR13285191
|
Sensitive
|
lineage4.9
|
None
|
ERR11465488
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR978767
|
RR-TB
|
lineage4.8
|
None
|
ERR4797201
|
Other
|
lineage1.2.2.2
|
None
|
SRR14802079
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR26159035
|
Sensitive
|
lineage4.9
|
None
|
SRR3675541
|
Sensitive
|
lineage4.9
|
None
|
ERR5311077
|
Other
|
La1.8.1
|
None
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR978747
|
Other
|
lineage4.8
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
ERR3468488
|
Other
|
La1.8.1
|
None
|
SRR2024953
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR2228900
|
Other
|
lineage4.8
|
None
|
SRR14334194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867566
|
Other
|
lineage4.9
|
None
|
ERR4818831
|
Other
|
lineage3
|
None
|
SRR7236330
|
Other
|
La1.8.1
|
None
|
ERR4769516
|
Sensitive
|
lineage4.9
|
None
|
ERR3445487
|
Other
|
La1.7.X-unk4
|
None
|
SRR1180446
|
Other
|
lineage4.9
|
None
|
ERR2886463
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
ERR4797193
|
HR-TB
|
lineage1.1.2
|
None
|
SRR3619841
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7240538
|
Other
|
La1.7.1
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR10796578
|
Other
|
lineage2.2.1
|
None
|
SRR26937071
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
SRR28351442
|
HR-TB
|
lineage3.1
|
None
|
ERR363447
|
Other
|
lineage4.9
|
None
|
ERR752012
|
HR-TB
|
lineage1.1.1.1
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR11342676
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR11488822
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR373947
|
Other
|
lineage4.9
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR6044835
|
Other
|
lineage4.9
|
None
|
SRR5341396
|
Other
|
lineage3;lineage4.9
|
None
|
SRR6045621
|
Other
|
lineage4.1.1.3
|
None
|
SRR6982077
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR473303
|
Sensitive
|
lineage4.9
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
ERR4819166
|
Other
|
lineage3
|
gb
|
ERR4769555
|
Sensitive
|
La1.3
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
SRR1180996
|
Sensitive
|
lineage4.9
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
ERR10796636
|
Other
|
lineage4.1.2.1
|
None
|
ERR4831621
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR6359070
|
Sensitive
|
lineage4.9
|
None
|
SRR6982418
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR363456
|
Sensitive
|
lineage4.9
|
None
|
SRR9970983
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5818469
|
Other
|
lineage4.9
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
ERR349264
|
Sensitive
|
lineage4.9
|
None
|
ERR369156
|
Sensitive
|
lineage4.9
|
None
|
ERR9119483
|
Pre-XDR-TB
|
lineage5.2
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6982058
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6982102
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7069839
|
Other
|
lineage4.8
|
None
|
SRR22424778
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR6046385
|
Sensitive
|
lineage4.9
|
None
|
ERR10796627
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR978727
|
Other
|
lineage4.8
|
None
|
ERR4796254
|
Sensitive
|
lineage4.9
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR4817398
|
Other
|
lineage3.1.1
|
None
|
ERR363500
|
Sensitive
|
lineage4.9
|
None
|
ERR2503533
|
Other
|
lineage4.1.2.1
|
fi
|
SRR5818459
|
Other
|
lineage4.9
|
None
|
SRR6045010
|
Sensitive
|
lineage4.9
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
ERR1163055
|
MDR-TB
|
lineage4.8
|
None
|
SRR18213736
|
Other
|
lineage3
|
None
|
ERR323062
|
Sensitive
|
lineage4.9
|
None
|
ERR3275190
|
Other
|
lineage3
|
nl
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR4796577
|
HR-TB
|
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR9786911
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR978751
|
Other
|
lineage4.8
|
None
|
ERR4816322
|
Other
|
lineage4.9
|
None
|
SRR21240055
|
Other
|
lineage4.1.2.1
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
ERR10762495
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1049674
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1815538
|
Other
|
La1.7.1
|
None
|
SRR11349147
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR1140716
|
Other
|
lineage3
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR1049677
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR1173170
|
Other
|
lineage4.9
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR1158918
|
Sensitive
|
lineage4.9
|
None
|
SRR1175472
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
SRR1180250
|
Other
|
lineage4.9
|
None
|
SRR3743401
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
ERR10796560
|
Other
|
lineage4.9
|
None
|
SRR6046611
|
Sensitive
|
lineage4.9
|
None
|
SRR5341373
|
Other
|
lineage4.9
|
None
|
ERR978733
|
RR-TB
|
lineage4.8
|
None
|
ERR363453
|
Sensitive
|
lineage4.9
|
None
|
SRR5007161
|
RR-TB
|
lineage4.1.1.3.1;lineage4.9
|
None
|
ERR978755
|
RR-TB
|
lineage4.8
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR5818430
|
Sensitive
|
lineage4.9
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR2228910
|
Other
|
lineage4.8
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7236399
|
Other
|
La1.8.1
|
None
|
ERR911929_ERR911930
|
Other
|
lineage4.8
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
ERR2027209
|
MDR-TB
|
lineage1.2.1.1
|
None
|
ERR4818624
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR1049676
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1172807
|
Sensitive
|
lineage4.9
|
None
|
ERR3283028
|
Other
|
La3;lineage4
|
None
|
SRR29772570
|
Other
|
lineage4.9
|
None
|
SRR1792025
|
Other
|
La1.8.1
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR369163
|
Sensitive
|
lineage4.9
|
None
|
SRR1140574
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR6046815
|
Other
|
lineage3
|
None
|
ERR1063896
|
Sensitive
|
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR12882669
|
Sensitive
|
lineage3.1.1
|
None
|
ERR9787336
|
RR-TB
|
lineage6.1.3
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR3619764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
SRR7645977
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2515230
|
Sensitive
|
lineage4.8
|
None
|
ERR551368
|
Sensitive
|
lineage4.8
|
de
|
ERR978694_ERR978693
|
Other
|
lineage4.8
|
None
|
ERR4820720
|
Other
|
lineage4.1.2.1
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
ERR4831620
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872077
|
Pre-XDR-TB
|
lineage5.2
|
None
|
SRR1159378
|
Other
|
lineage4.9
|
None
|
SRR1062919
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR11349211
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1140753
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
ERR8025347
|
Sensitive
|
lineage4.9
|
None
|
SRR18149455
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR751345
|
Other
|
lineage5.1.1
|
None
|
SRR13180204
|
Other
|
lineage3
|
None
|
SRR6046117
|
Other
|
lineage4.9
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
ERR911929
|
Other
|
lineage4.8
|
None
|
SRR18002875
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1184329
|
Other
|
lineage4.9
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
SRR5818398
|
Other
|
lineage4.9
|
None
|
SRR18003032
|
Other
|
lineage2.2.1
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4187921
|
Sensitive
|
lineage4.9
|
None
|
SRR5341467
|
Other
|
lineage4.9
|
None
|
SRR1173777
|
Sensitive
|
lineage4.9
|
None
|
DRR188816
|
Sensitive
|
lineage4.2.2
|
None
|
ERR4819383
|
RR-TB
|
lineage4.9
|
None
|
SRR1915485
|
Other
|
La1.2.BCG
|
None
|
SRR11972188
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11465189
|
RR-TB
|
lineage4.9.1
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
ERR11465511
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR1792022
|
Other
|
La1.8.1
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
SRR1173185
|
Other
|
lineage4.9
|
None
|
SRR16278274
|
Other
|
La1.4
|
None
|
SRR5341298
|
Sensitive
|
lineage4.9
|
None
|
ERR867571
|
Other
|
lineage4.9
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
SRR6046253
|
Sensitive
|
lineage4.9
|
None
|
SRR9971112
|
Other
|
lineage2.2.1
|
None
|
SRR6982448
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR7131195
|
Other
|
lineage2.2.1
|
None
|
ERR4797264
|
Sensitive
|
lineage4.9
|
None
|
ERR2041725
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
ERR4818110
|
Sensitive
|
lineage4.9
|
None
|
ERR245675
|
Sensitive
|
lineage1.1.2
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR2513121
|
Sensitive
|
lineage3.1.3
|
None
|
SRR1915487
|
Other
|
La1.2.BCG
|
None
|
ERR2851356
|
Sensitive
|
lineage4.9
|
None
|
SRR1062918
|
Other
|
lineage3
|
None
|
ERR4819863
|
RR-TB
|
lineage4.9
|
None
|
ERR978754
|
RR-TB
|
lineage4.8
|
None
|
SRR2100532
|
Sensitive
|
lineage3
|
None
|
ERR3324368
|
RR-TB
|
lineage1.1.2;lineage6.2.3
|
None
|
ERR4024991
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR9786528
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR5818452
|
Other
|
lineage4.9
|
None
|
ERR4769514
|
Other
|
La1.3
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
ERR473334
|
HR-TB
|
lineage4.9
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4769505
|
Other
|
lineage4.9
|
None
|
ERR11465510
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR1183965
|
Sensitive
|
lineage4.9
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR20632814
|
Sensitive
|
lineage4.9
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR11349207
|
RR-TB
|
lineage2.2.1
|
None
|
SRR8692893
|
Other
|
lineage4.9
|
None
|
SRR9971046
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971122
|
MDR-TB
|
lineage4.8
|
None
|
ERR10796635
|
Other
|
lineage4.8
|
None
|
ERR4818536
|
Other
|
lineage4.9
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
ERR5917985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR228175
|
Sensitive
|
lineage3
|
None
|
ERR3797087
|
Sensitive
|
lineage4.9
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
ERR978734
|
RR-TB
|
lineage4.8
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
SRR12062533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR1791725
|
Other
|
La1.8.1
|
None
|
ERR038289
|
Other
|
lineage4.3.3
|
None
|
ERR10762291
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4769550
|
Sensitive
|
La1;lineage4.9
|
None
|
ERR978694
|
Other
|
lineage4.8
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR21713567
|
Sensitive
|
lineage4.5
|
None
|
SRR7070195
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR9971270
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10796597
|
Other
|
lineage4.3.3
|
None
|
SRR12708396
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
SRR18911231
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR7131287
|
Other
|
lineage2.2.1.1
|
None
|
ERR5311097
|
Sensitive
|
lineage4.2;lineage4.6.3;lineage4.9
|
None
|
ERR13285192
|
Sensitive
|
lineage4.9
|
None
|
ERR970445
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045503
|
Sensitive
|
lineage4.9
|
None
|
SRR1140736
|
Other
|
lineage4.1.2.1
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
ERR3806850
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR7535082
|
Sensitive
|
lineage4.9
|
None
|
ERR4819007
|
Other
|
lineage2.2.1
|
None
|
ERR9786597
|
Other
|
lineage4.6.2.2
|
None
|
ERR12015084
|
Other
|
lineage4.8
|
None
|
SRR18002874
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR752229
|
Other
|
lineage4.5
|
None
|
ERR323066
|
Sensitive
|
lineage4.9
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
SRR1049675
|
HR-TB
|
lineage2.2.1
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
SRR6397733
|
Other
|
lineage4.4.1.2
|
None
|
ERR4820798
|
Other
|
lineage3.1.2.1
|
gb
|
ERR4811030
|
Sensitive
|
lineage4.9
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
ERR978765
|
RR-TB
|
lineage4.8
|
None
|
ERR4815783
|
Other
|
lineage4.1.2.1
|
gb
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
SRR7069347
|
Other
|
lineage4.1.2.1
|
None
|
SRR11349191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799989
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR7069931
|
Other
|
lineage4.2.2.2
|
None
|
SRR11342684
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
ERR867568
|
Other
|
lineage2.2.1;lineage4
|
None
|
ERR10219876
|
Other
|
lineage4.3.4.2
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
ERR502481
|
RR-TB
|
lineage4.9
|
None
|
SRR21469200
|
Other
|
La1.7.1
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
SRR21727760
|
Other
|
lineage2.2.1
|
None
|
ERR502474
|
RR-TB
|
lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
ERR10796640
|
Other
|
lineage4.1.2.1
|
None
|
ERR9117827
|
Other
|
lineage1.2.2.2
|
None
|
SRR18002933
|
Other
|
lineage2.2.1
|
None
|
SRR1172717
|
Sensitive
|
lineage4.9
|
None
|
SRR11342669
|
Other
|
lineage4.8
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR9786592
|
Other
|
lineage4.3.4.2
|
None
|
ERR4815022
|
Other
|
lineage3.1.2.1
|
None
|
ERR10796564
|
Other
|
lineage4.3.3
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
ERR3806588
|
Other
|
lineage6.1.3
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR7069518
|
Other
|
lineage4.8
|
None
|
ERR10796633
|
Other
|
lineage4.3.4.2
|
None
|
ERR11465604
|
HR-TB
|
lineage4.8.1
|
None
|
SRR5341310
|
Other
|
lineage1.1.2
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
SRR6045191
|
Sensitive
|
lineage4.9
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR11972425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6982239
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR5818394
|
Other
|
lineage4.9
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR6045957
|
Other
|
lineage4.9
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
SRR7617847
|
Other
|
La1.8.1
|
None
|
ERR7801175
|
HR-TB
|
lineage4.6.5
|
None
|
SRR7069800
|
Other
|
lineage3.1.2.1
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
SRR6824501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7131123
|
Other
|
lineage4.8
|
None
|
SRR7240476
|
Other
|
La1.8.1
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
SRR7755654
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
SRR5818432
|
MDR-TB
|
lineage4.9
|
None
|
ERR4769427
|
Other
|
La1.2
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
SRR3618864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR702405
|
Sensitive
|
lineage4.9
|
None
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA3501015
|
Other
|
lineage4.8
|
None
|
ERR867538
|
Other
|
lineage4.2.2.2
|
None
|
SRR7851312
|
Other
|
La1.2
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513259
|
Other
|
lineage3
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR4817915
|
Other
|
lineage4.9
|
None
|
ERR4831618
|
MDR-TB
|
lineage2.1
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR5163959
|
Other
|
lineage4.9
|
None
|
SRR6855695
|
Sensitive
|
lineage4.8
|
None
|
SRR7236177
|
Other
|
La1.8.1
|
None
|
ERR10796561
|
Other
|
lineage4.3.2
|
None
|
SRR5818411
|
RR-TB
|
lineage4.9
|
None
|
ERR10796591
|
Other
|
lineage4.9
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
SRR6896178
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7645928
|
Other
|
lineage4.7
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
ERR4816856
|
Other
|
lineage4.1.2.1
|
None
|
ERR1465846
|
Sensitive
|
lineage4.8
|
None
|
ERR176580
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR16149129
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR6982471
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1049560
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
SRR7131149
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
SRR3675222
|
Other
|
La1.7
|
None
|
SRR7645906
|
Other
|
lineage2.2.1
|
None
|
ERR369162
|
Other
|
lineage4.9
|
None
|
SRR10808668
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1173568
|
Sensitive
|
lineage4.9
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
SRR21737226
|
Sensitive
|
lineage4.5
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR4811031
|
Sensitive
|
lineage4.5
|
None
|
SRR5818404
|
Other
|
lineage4.9
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
SRR7069922
|
Other
|
lineage2.2.1
|
None
|
ERR978761
|
Other
|
lineage4.8
|
None
|
ERR10796565
|
Other
|
lineage4.9
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR867527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5818414
|
Other
|
lineage4.9
|
None
|
SRR18002891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5818395
|
Sensitive
|
lineage4.9
|
None
|
ERR4819357
|
Sensitive
|
lineage4.9
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR1175496
|
Sensitive
|
lineage4.9
|
None
|
SRR11342640
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR036207
|
Other
|
lineage4.3;lineage4.9
|
None
|
ERR3283026
|
HR-TB
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
ERR6866357
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR369158
|
Other
|
lineage4.9
|
None
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR369151
|
Other
|
lineage4.9
|
None
|
ERR363498
|
Sensitive
|
lineage4.9
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
ERR9119733
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4769554
|
RR-TB
|
lineage4.9
|
None
|
ERR10796628
|
Other
|
lineage4.3.3
|
None
|
ERR978756
|
Other
|
lineage4.8
|
None
|
SRR15316595
|
RR-TB
|
lineage4.4.2
|
None
|
SRR6046616
|
Other
|
lineage4.3.1.1
|
None
|
SRR5341400
|
Sensitive
|
lineage4.9
|
None
|
SRR5341455
|
Sensitive
|
lineage4.9
|
None
|
SRR1791747
|
Other
|
La1.8.1
|
None
|
SRR7131229
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046299
|
Other
|
lineage4.3.1;lineage4.9;lineage6
|
None
|
ERR6358979
|
Other
|
lineage4.9
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
SRR3675552
|
Other
|
lineage4.9
|
None
|
SRR7645899
|
Other
|
lineage2.2.1
|
None
|
SRR9613550
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR10796571
|
Other
|
lineage4.9
|
None
|
ERR10796589
|
Other
|
lineage4.9
|
None
|
ERR7801176
|
RR-TB
|
lineage4.6.5
|
None
|
SRR7070320
|
Other
|
lineage4.8
|
None
|
SRR3675210
|
Sensitive
|
lineage4.9
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
ERR4178309
|
Other
|
lineage4.1.2.1
|
None
|