TB-Profiler result

Run: ERR4816417
Summary

Run ID: ERR4816417

Sample name:

Date: 01-04-2023 14:25:03

Number of reads: 50610

Percentage reads mapped: 9.0

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.77 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6745 c.-557T>C upstream_gene_variant 1.0
gyrA 6751 c.-551G>C upstream_gene_variant 1.0
gyrA 6760 c.-542G>C upstream_gene_variant 1.0
gyrA 6772 c.-530C>A upstream_gene_variant 0.5
gyrA 6775 c.-527G>C upstream_gene_variant 1.0
gyrB 6784 p.Asp515Glu missense_variant 1.0
gyrA 6787 c.-515G>A upstream_gene_variant 1.0
gyrA 6796 c.-506C>T upstream_gene_variant 0.5
gyrB 6797 p.Gly520Lys missense_variant 1.0
gyrA 6808 c.-494C>G upstream_gene_variant 0.8
gyrB 6812 p.His525Asp missense_variant 0.8
gyrA 6835 c.-467C>T upstream_gene_variant 0.8
gyrA 6841 c.-461T>C upstream_gene_variant 0.4
gyrA 6844 c.-458T>G upstream_gene_variant 0.67
rpoB 762197 c.2391C>G synonymous_variant 0.8
rpoB 762200 c.2394C>T synonymous_variant 0.8
rpoB 762228 c.2422C>T synonymous_variant 0.78
rpoB 762233 c.2427G>T synonymous_variant 1.0
rpoB 762239 c.2433G>A synonymous_variant 1.0
rpoB 762245 c.2439G>C synonymous_variant 1.0
rpoB 762254 c.2448T>C synonymous_variant 1.0
rpoB 762284 c.2478G>T synonymous_variant 0.62
rpoB 762290 c.2484C>T synonymous_variant 1.0
rpoB 762293 c.2487T>C synonymous_variant 1.0
rpoB 762296 c.2490G>C synonymous_variant 0.75
rpoB 762297 p.Leu831Met missense_variant 0.75
rpoB 762305 c.2499G>T synonymous_variant 0.6
rpoB 762352 p.Arg849Leu missense_variant 1.0
rpoC 762971 c.-399G>T upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 0.83
rpoC 762995 c.-375G>C upstream_gene_variant 0.83
rpoB 763005 p.Cys1067Val missense_variant 0.83
rpoC 763013 c.-357C>A upstream_gene_variant 0.86
rpoC 763022 c.-348C>T upstream_gene_variant 0.75
rpoC 763028 c.-342T>C upstream_gene_variant 0.75
rpoC 763031 c.-339T>C upstream_gene_variant 0.25
rpoC 763053 c.-317_-315delTTGinsCTT upstream_gene_variant 0.7
rpoB 763074 p.Thr1090Val missense_variant 0.57
rpoC 763079 c.-291C>A upstream_gene_variant 0.67
rpoC 763088 c.-282C>G upstream_gene_variant 0.67
rpoC 763094 c.-276G>C upstream_gene_variant 0.67
rpoC 763103 c.-267G>C upstream_gene_variant 1.0
rpoC 763109 c.-261C>G upstream_gene_variant 1.0
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 0.5
rpoC 763507 c.138G>C synonymous_variant 0.5
rpoC 763528 c.159G>C synonymous_variant 1.0
rpoC 763531 c.162G>C synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763537 c.168C>G synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763550 p.Tyr61Ala missense_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763578 p.Phe70Tyr missense_variant 0.8
rpoC 763594 c.225C>T synonymous_variant 0.67
rpoC 763600 c.231C>T synonymous_variant 0.57
rpoC 763609 c.240C>T synonymous_variant 0.71
rpoC 763615 c.246G>C synonymous_variant 0.57
rpoC 763619 p.Arg84Lys missense_variant 0.71
rpoC 763622 p.Ala85Ser missense_variant 0.71
rpoC 763642 c.273G>C synonymous_variant 0.82
rpoC 763660 c.291T>G synonymous_variant 0.83
rpoC 763666 c.297G>T synonymous_variant 0.83
rpoC 763669 c.300C>G synonymous_variant 0.82
rpoC 763672 c.303C>A synonymous_variant 0.82
rpoC 763696 c.327T>C synonymous_variant 1.0
rpoC 763699 c.330G>T synonymous_variant 1.0
rpoC 763702 c.333C>T synonymous_variant 1.0
rpoC 763705 c.336G>C synonymous_variant 1.0
rpoC 763708 c.339G>C synonymous_variant 1.0
rpoC 763709 c.340C>T synonymous_variant 1.0
rpoC 763714 c.345G>C synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763732 c.363C>A synonymous_variant 1.0
rpoC 764326 c.957G>T synonymous_variant 1.0
rpoC 764329 c.960C>T synonymous_variant 1.0
rpoC 764335 c.966G>T synonymous_variant 1.0
rpoC 764339 c.970C>T synonymous_variant 1.0
rpoC 764359 c.990C>G synonymous_variant 1.0
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764371 c.1002G>C synonymous_variant 1.0
rpoC 764377 c.1008C>T synonymous_variant 1.0
rpoC 764380 c.1011G>C synonymous_variant 1.0
rpoC 764383 c.1014C>G synonymous_variant 1.0
rpoC 764387 c.1018T>C synonymous_variant 1.0
rpoC 764392 c.1023C>T synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764410 c.1041G>T synonymous_variant 1.0
rpoC 764422 c.1053C>T synonymous_variant 1.0
rpoC 764428 c.1059G>T synonymous_variant 1.0
rpoC 764920 c.1551G>T synonymous_variant 1.0
rpoC 764923 c.1554A>G synonymous_variant 1.0
rpoC 764926 c.1557C>T synonymous_variant 1.0
rpoC 764932 c.1563C>T synonymous_variant 1.0
rpoC 764948 c.1579T>C synonymous_variant 1.0
rpoC 764952 p.Val528Ala missense_variant 1.0
rpoC 764968 c.1599T>C synonymous_variant 1.0
rpoC 765119 p.Gly584Arg missense_variant 1.0
rpoC 767106 p.Asn1246Ile missense_variant 1.0
rpoC 767110 c.3741T>C synonymous_variant 1.0
rpoC 767113 c.3744G>C synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767125 c.3756G>C synonymous_variant 1.0
rpoC 767134 c.3765C>T synonymous_variant 1.0
rpsL 781682 c.123T>C synonymous_variant 1.0
rplC 800669 c.-140G>T upstream_gene_variant 1.0
rplC 800672 c.-137G>C upstream_gene_variant 1.0
rplC 800693 c.-116A>G upstream_gene_variant 0.67
rplC 800702 c.-107G>C upstream_gene_variant 0.67
rplC 800703 c.-106T>C upstream_gene_variant 0.67
rplC 800711 c.-98C>T upstream_gene_variant 0.67
rplC 800714 c.-95C>T upstream_gene_variant 0.67
rplC 800715 c.-94A>C upstream_gene_variant 0.67
rplC 800720 c.-89T>C upstream_gene_variant 1.0
rplC 800723 c.-86C>G upstream_gene_variant 1.0
rplC 800726 c.-83G>C upstream_gene_variant 1.0
rplC 800741 c.-68C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.96
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.79
rrs 1471926 n.81C>T non_coding_transcript_exon_variant 0.18
rrs 1471928 n.83T>G non_coding_transcript_exon_variant 0.78
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.17
rrs 1471996 n.151C>T non_coding_transcript_exon_variant 0.8
rrs 1472026 n.181C>A non_coding_transcript_exon_variant 1.0
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.78
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.95
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.97
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.98
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.97
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.97
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.88
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 1.0
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 1.0
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.8
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.38
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 1.0
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 1.0
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 1.0
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.8
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472504 n.659A>T non_coding_transcript_exon_variant 1.0
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.86
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.17
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.81
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.19
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.81
rrs 1472574 n.729T>A non_coding_transcript_exon_variant 0.83
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.92
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.81
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.86
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 1.0
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.92
rrs 1472669 n.824_825insA non_coding_transcript_exon_variant 0.5
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 1.0
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.9
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 1.0
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 1.0
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.25
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.84
rrs 1472970 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472974 n.1129A>T non_coding_transcript_exon_variant 0.7
rrs 1472977 n.1133dupT non_coding_transcript_exon_variant 0.63
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.9
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.94
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.18
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.8
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.83
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.17
rrs 1473089 n.1244A>C non_coding_transcript_exon_variant 0.71
rrs 1473091 n.1246G>C non_coding_transcript_exon_variant 0.67
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.33
rrs 1473099 n.1254T>C non_coding_transcript_exon_variant 0.67
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.83
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473120 n.1275C>G non_coding_transcript_exon_variant 0.6
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.8
rrs 1473123 n.1278A>G non_coding_transcript_exon_variant 0.86
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.29
rrs 1473132 n.1287T>C non_coding_transcript_exon_variant 0.53
rrs 1473135 n.1290C>T non_coding_transcript_exon_variant 0.84
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.97
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473292 n.1447G>T non_coding_transcript_exon_variant 0.97
rrs 1473293 n.1448G>T non_coding_transcript_exon_variant 0.97
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473346 n.1501G>C non_coding_transcript_exon_variant 0.83
rrs 1473365 n.1520C>G non_coding_transcript_exon_variant 0.67
rrl 1473697 n.40C>G non_coding_transcript_exon_variant 1.0
rrl 1473698 n.41G>C non_coding_transcript_exon_variant 1.0
rrl 1473699 n.42A>T non_coding_transcript_exon_variant 1.0
rrl 1473700 n.43G>A non_coding_transcript_exon_variant 0.36
rrl 1473718 n.61G>T non_coding_transcript_exon_variant 0.56
rrl 1473719 n.62G>A non_coding_transcript_exon_variant 1.0
rrl 1473728 n.71A>T non_coding_transcript_exon_variant 1.0
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.56
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 1.0
rrl 1473750 n.93C>T non_coding_transcript_exon_variant 1.0
rrl 1473751 n.94C>A non_coding_transcript_exon_variant 0.38
rrl 1473752 n.95G>A non_coding_transcript_exon_variant 0.38
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 1.0
rrl 1473884 n.227C>T non_coding_transcript_exon_variant 1.0
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 1.0
rrl 1473889 n.232G>A non_coding_transcript_exon_variant 1.0
rrl 1473896 n.239C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 1.0
rrl 1473911 n.254G>A non_coding_transcript_exon_variant 1.0
rrl 1473918 n.261C>T non_coding_transcript_exon_variant 1.0
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1474124 n.467G>A non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474142 n.485C>T non_coding_transcript_exon_variant 0.78
rrl 1474143 n.486T>C non_coding_transcript_exon_variant 0.22
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.87
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.96
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.89
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.93
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 1.0
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 1.0
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 1.0
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.17
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.83
rrl 1474527 n.870T>G non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>C non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.83
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.83
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.83
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474784 n.1127C>T non_coding_transcript_exon_variant 0.7
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 0.91
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.91
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.91
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.9
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.9
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.97
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.89
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 1.0
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 1.0
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.67
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 0.67
rrl 1475499 n.1842C>G non_coding_transcript_exon_variant 1.0
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 1.0
rrl 1475522 n.1865A>T non_coding_transcript_exon_variant 1.0
rrl 1475525 n.1868G>A non_coding_transcript_exon_variant 0.95
rrl 1475526 n.1869C>G non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 1.0
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 1.0
rrl 1475562 n.1905C>T non_coding_transcript_exon_variant 0.95
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 1.0
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 1.0
rrl 1475704 n.2047C>T non_coding_transcript_exon_variant 1.0
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 1.0
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 1.0
rrl 1475757 n.2101_2104delACCC non_coding_transcript_exon_variant 1.0
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 1.0
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.78
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.96
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.89
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.98
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.93
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.93
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.96
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476031 n.2374C>T non_coding_transcript_exon_variant 0.25
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 1.0
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 1.0
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 1.0
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 1.0
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 1.0
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476080 n.2423T>G non_coding_transcript_exon_variant 1.0
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.94
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.92
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.96
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>A non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 1.0
rrl 1476309 n.2652G>T non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.93
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.93
rrl 1476535 n.2878G>A non_coding_transcript_exon_variant 0.92
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.94
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.92
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.94
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.88
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.94
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.94
rrl 1476592 n.2935G>A non_coding_transcript_exon_variant 0.94
rrl 1476605 n.2948C>T non_coding_transcript_exon_variant 0.92
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.91
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.91
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.91
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
rpsA 1833709 c.168C>A synonymous_variant 1.0
rpsA 1833727 c.186G>T synonymous_variant 1.0
rpsA 1833733 c.192C>T synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1834003 c.462G>A synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>T synonymous_variant 1.0
rpsA 1834025 p.Gln162Glu missense_variant 1.0
rpsA 1834030 c.489C>A synonymous_variant 0.67
rpsA 1834036 c.495C>T synonymous_variant 1.0
rpsA 1834040 p.Lys167Gln missense_variant 1.0
rpsA 1834046 p.Ile169Leu missense_variant 1.0
rpsA 1834051 p.Glu170Asp missense_variant 1.0
clpC1 4038356 c.2349T>C synonymous_variant 1.0
clpC1 4038359 c.2346A>G synonymous_variant 1.0
clpC1 4038365 p.Glu780Asp missense_variant 1.0
clpC1 4038368 c.2337T>C synonymous_variant 1.0
clpC1 4038374 c.2331C>T synonymous_variant 1.0
clpC1 4038383 c.2322G>C synonymous_variant 1.0
clpC1 4038395 c.2310C>T synonymous_variant 1.0
clpC1 4038398 c.2307G>T synonymous_variant 1.0
clpC1 4038401 c.2302_2304delTTGinsCTC synonymous_variant 1.0
clpC1 4038404 c.2301G>A synonymous_variant 1.0
clpC1 4038419 c.2286T>C synonymous_variant 1.0
clpC1 4038424 p.Lys761Gln missense_variant 1.0
clpC1 4038529 p.Glu726Gln missense_variant 0.6
clpC1 4038539 c.2166G>C synonymous_variant 0.6
clpC1 4038554 p.Ile717Val missense_variant 0.6
clpC1 4038559 p.Ile716Val missense_variant 0.6
clpC1 4038563 c.2142C>T synonymous_variant 0.6
clpC1 4038569 c.2136C>T synonymous_variant 0.6
clpC1 4038575 c.2130C>G synonymous_variant 0.6
clpC1 4038584 c.2121G>C synonymous_variant 0.6
clpC1 4038596 c.2109A>G synonymous_variant 0.75
clpC1 4039004 c.1701C>T synonymous_variant 1.0
clpC1 4039012 p.Ala565Ser missense_variant 1.0
clpC1 4039016 c.1689C>G synonymous_variant 1.0
clpC1 4039022 c.1683A>G synonymous_variant 1.0
clpC1 4039034 c.1671C>G synonymous_variant 1.0
whiB6 4338384 c.138C>T synonymous_variant 0.5
gid 4407927 p.Glu92Asp missense_variant 1.0