EBG00000313339 - n.1882A>T
Drug resistance types
89 Sensitive
26 RR-TB
36 HR-TB
38 MDR-TB
19 Pre-XDR-TB
0 XDR-TB
101 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 136 |
| lineage2.2.1 | 36 |
| lineage4.3.3;lineage4.8 | 2 |
| lineage4.1.1.3 | 7 |
| lineage4.3.3 | 8 |
| lineage4.3.4.2.1 | 10 |
| lineage1.1.3.2 | 1 |
| lineage4 | 3 |
| lineage4.1.2.1 | 6 |
| lineage4.2.1 | 6 |
| La2 | 1 |
| lineage4.6.1.2 | 4 |
| lineage2.2;lineage3 | 1 |
| lineage3;lineage4 | 1 |
| lineage3 | 7 |
| La1.7;lineage4.9 | 1 |
| lineage4.2.1.1 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| La1.8.1 | 2 |
| La1.7.X-unk4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4.9.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.8 | 8 |
| lineage3.1.2.1 | 2 |
| lineage4.1.1.1 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.6.1.1 | 3 |
| lineage4.8.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage2.2.2 | 2 |
| lineage4.7 | 2 |
| La1;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.4.1.1 | 3 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| La1.2 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.4.1.2 | 1 |
| lineage3.1;lineage4 | 1 |
| lineage3.1.1;lineage4.6.1.1 | 1 |
| 1 | |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.4.1.1.1 | 3 |
| La1.3 | 3 |
| lineage4.1.3 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.4.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage4.3.2 | 1 |
| lineage3.1;lineage4.6.1.1 | 1 |
| lineage4.1.2 | 1 |
| La1.6 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 309 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173865 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR9119101 | Sensitive | lineage4.3.3 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | SAMN02567685 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR1063855 | Other | lineage4.9 | None | ERR176781 | Sensitive | lineage1.1.3.2 | None | SRR1180686 | Other | lineage4.9 | None | SRR1173768 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173380 | Pre-XDR-TB | lineage2.2;lineage3 | None | SRR1182900 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR164004 | Sensitive | lineage4.9 | None | SRR1175474 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1166181 | Sensitive | lineage4.2.1 | None | ERR4814976 | Other | lineage4.9 | None | SRR11342646 | HR-TB | lineage3 | None | SRR7755733 | MDR-TB | lineage4.3.3 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR1180250 | Other | lineage4.9 | None | SRR7646056 | Other | lineage4.2.1.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | ERR1873445 | MDR-TB | lineage2.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR1181569 | Other | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | ERR3468488 | Other | La1.8.1 | None | SRR1173719 | Other | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180024 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR1180087 | Other | lineage4.9 | None | ERR972801 | RR-TB | lineage2.2.1.1 | None | ERR405216 | Sensitive | lineage3.1.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR037504 | Other | lineage4.9.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1173185 | Other | lineage4.9 | None | SRR1183152 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1181580 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1183281 | Other | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | SRR1181368 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR473311 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1183438 | Other | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | ERR323057 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173190 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR1183684 | Other | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SAMN02567670 | Sensitive | lineage4.6.1.1 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR4817434 | Other | lineage3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183190 | Other | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR1034791 | MDR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR7645928 | Other | lineage4.7 | None | SRR7496471 | Sensitive | lineage4 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1173800 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR1173269 | Sensitive | lineage4.9 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1173343 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173764 | Sensitive | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1168955 | Sensitive | lineage4.2;lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1184308 | RR-TB | lineage4.9 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR867567 | RR-TB | lineage3 | None | ERR473340 | Sensitive | lineage1.1.2 | None | ERR2124090 | MDR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1174277 | HR-TB | lineage2.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR10796589 | Other | lineage4.9 | None | SRR1181422 | Other | lineage4.9 | None | SRR1183339 | Other | lineage4.9 | None | SRR1181147 | Other | lineage4.9 | None | ERR405222 | Sensitive | lineage3.1;lineage4 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1173770 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1173704 | Sensitive | lineage4.6.1.1 | None | ERR736825 | Sensitive | lineage4.9 | None | SRR1173293 | Other | lineage3.1.1;lineage4.6.1.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR1183170 | Other | lineage4.9 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR4796577 | HR-TB | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR405191 | Sensitive | lineage4.9 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR773806 | Sensitive | lineage2.2.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR4769408 | Other | La1.3 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR7131123 | Other | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR11462861 | Other | La1.8.1 | None | ERR2124088 | Other | lineage4.4.1.1 | None | SRR6045832 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4816322 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR176741 | Other | lineage4.9 | None | SRR13591377 | Sensitive | lineage4.1.1.3 | None | SRR1182954 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR867573 | Other | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR773804 | Sensitive | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR1173139 | Sensitive | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR405215 | Sensitive | lineage2.2.1 | None | SRR1182878 | Other | lineage4.9 | None | SRR1181264 | Sensitive | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR323067 | Sensitive | lineage4.3.4.2.1 | None | ERR867572 | Other | lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR405217 | Sensitive | lineage2.2.1 | None | SRR7131053 | Other | lineage2.2.1 | None | SRR1181299 | Other | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR1173421 | Other | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR1173508 | Sensitive | lineage4.9 | None | SRR1183531 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1180047 | Other | lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR1180687 | Other | lineage4.9 | None | SRR13591376 | Sensitive | lineage4.3.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR736850 | Sensitive | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR4769555 | Sensitive | La1.3 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1173565 | MDR-TB | lineage3.1;lineage4.6.1.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR867569 | Other | lineage4.9 | None | SRR1173766 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR970455 | RR-TB | lineage4.1.2 | None | ERR4816852 | Other | lineage4.9 | None | SRR1173705 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR405190 | Sensitive | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1181403 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502942 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None |
|---|
