TB-Profiler result

Run: ERR4769408
Summary

Run ID: ERR4769408

Sample name:

Date: 01-04-2023 06:39:28

Number of reads: 579018

Percentage reads mapped: 27.9

Strain: La1.3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.3 M.bovis None None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 8762 c.1461G>C synonymous_variant 0.14
gyrA 8767 p.Arg489Lys missense_variant 0.14
gyrA 8769 p.His490Tyr missense_variant 0.14
gyrA 8783 c.1482G>T synonymous_variant 0.2
gyrA 8792 c.1491G>C synonymous_variant 0.27
gyrA 8801 c.1500G>C synonymous_variant 0.25
gyrA 8818 p.Ser506Asn missense_variant 0.21
gyrA 8829 c.1528T>C synonymous_variant 0.2
gyrA 8843 c.1542G>A synonymous_variant 0.2
gyrA 8852 c.1551T>C synonymous_variant 0.2
gyrA 8858 c.1557T>G synonymous_variant 0.19
gyrA 8867 c.1566A>G synonymous_variant 0.16
gyrA 8870 c.1569G>C synonymous_variant 0.18
gyrA 8873 c.1572A>T synonymous_variant 0.17
gyrA 8897 c.1596T>C synonymous_variant 0.14
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491214 c.432C>T synonymous_variant 0.17
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760121 c.315T>A synonymous_variant 0.13
rpoB 760130 p.Asp108Glu missense_variant 0.13
rpoB 760172 c.366G>C synonymous_variant 0.2
rpoB 760181 c.375T>G synonymous_variant 0.17
rpoB 760184 c.378A>G synonymous_variant 0.17
rpoB 760185 c.379C>T synonymous_variant 0.16
rpoB 760199 c.393C>G synonymous_variant 0.14
rpoB 760220 c.414C>T synonymous_variant 0.13
rpoB 760235 c.429T>C synonymous_variant 0.13
rpoB 761006 c.1200C>G synonymous_variant 0.13
rpoB 761063 c.1257C>T synonymous_variant 0.15
rpoB 761071 p.Lys422Arg missense_variant 0.14
rpoB 761084 c.1278C>A synonymous_variant 0.18
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.19
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.17
rpoB 761102 c.1296A>G synonymous_variant 0.21
rpoB 761133 c.1327T>C synonymous_variant 0.19
rpoB 761138 c.1332C>G synonymous_variant 0.17
rpoB 761147 c.1341C>T synonymous_variant 0.19
rpoB 761150 c.1344A>T synonymous_variant 0.19
rpoB 761156 c.1350G>C synonymous_variant 0.16
rpoB 761159 c.1353G>C synonymous_variant 0.16
rpoB 761162 c.1356G>C synonymous_variant 0.16
rpoB 761165 c.1359G>C synonymous_variant 0.15
rpoB 761168 c.1362C>G synonymous_variant 0.15
rpoB 761180 c.1374A>C synonymous_variant 0.19
rpoB 761189 c.1383T>C synonymous_variant 0.2
rpoB 761195 c.1389G>C synonymous_variant 0.23
rpoB 761198 c.1392G>C synonymous_variant 0.22
rpoB 761204 c.1398C>T synonymous_variant 0.21
rpoB 761213 c.1407G>T synonymous_variant 0.16
rpoB 761234 c.1428G>C synonymous_variant 0.15
rpoB 761273 c.1467T>C synonymous_variant 0.11
rpoB 761969 c.2163G>A synonymous_variant 0.18
rpoB 761996 c.2190C>T synonymous_variant 0.17
rpoB 762002 c.2196C>G synonymous_variant 0.16
rpoB 762003 p.Asn733Gln missense_variant 0.16
rpoB 762008 c.2202C>T synonymous_variant 0.17
rpoB 762011 c.2205G>C synonymous_variant 0.17
rpoB 762014 c.2208C>G synonymous_variant 0.17
rpoB 762026 c.2220G>C synonymous_variant 0.18
rpoB 762029 c.2223C>G synonymous_variant 0.18
rpoB 762038 c.2232C>T synonymous_variant 0.21
rpoB 762053 c.2247T>C synonymous_variant 0.19
rpoB 762065 c.2259T>C synonymous_variant 0.23
rpoB 762080 c.2274G>C synonymous_variant 0.21
rpoB 762086 c.2280G>C synonymous_variant 0.2
rpoB 762092 c.2286G>A synonymous_variant 0.19
rpoB 762098 c.2292C>T synonymous_variant 0.2
rpoB 762114 p.Ile770Val missense_variant 0.17
rpoB 762128 c.2322G>C synonymous_variant 0.12
rpoB 762140 c.2334G>C synonymous_variant 0.24
rpoB 762143 c.2337T>C synonymous_variant 0.24
rpoB 762149 c.2343G>C synonymous_variant 0.25
rpoB 762156 p.Val784Ile missense_variant 0.22
rpoB 762161 c.2355C>T synonymous_variant 0.22
rpoB 762179 c.2373C>T synonymous_variant 0.21
rpoB 762185 c.2379G>C synonymous_variant 0.21
rpoB 762189 p.Ile795Val missense_variant 0.24
rpoB 762200 c.2394C>A synonymous_variant 0.21
rpoB 762209 c.2403C>G synonymous_variant 0.19
rpoB 762218 c.2412T>C synonymous_variant 0.16
rpoB 762233 c.2427G>C synonymous_variant 0.14
rpoB 762236 c.2430G>C synonymous_variant 0.13
rpoB 762239 c.2433G>A synonymous_variant 0.14
rpoB 762245 c.2439G>C synonymous_variant 0.14
rpoB 762248 c.2442G>C synonymous_variant 0.14
rpoB 762251 c.2445G>T synonymous_variant 0.14
rpoB 762254 c.2448T>C synonymous_variant 0.14
rpoB 762881 p.Met1025Ile missense_variant 0.13
rpoC 762894 c.-476C>T upstream_gene_variant 0.14
rpoC 762899 c.-471G>C upstream_gene_variant 0.14
rpoC 762917 c.-453C>T upstream_gene_variant 0.17
rpoC 762920 c.-450C>T upstream_gene_variant 0.17
rpoC 762923 c.-447C>G upstream_gene_variant 0.17
rpoC 762929 c.-441G>T upstream_gene_variant 0.16
rpoC 762947 c.-423C>G upstream_gene_variant 0.16
rpoC 762956 c.-414G>T upstream_gene_variant 0.17
rpoC 762959 c.-411G>C upstream_gene_variant 0.18
rpoC 762962 c.-408C>T upstream_gene_variant 0.18
rpoC 762971 c.-399G>C upstream_gene_variant 0.19
rpoC 762989 c.-381G>C upstream_gene_variant 0.16
rpoC 762995 c.-375G>T upstream_gene_variant 0.13
rpoC 763013 c.-357C>G upstream_gene_variant 0.13
rpoC 763028 c.-342T>C upstream_gene_variant 0.12
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>T upstream_gene_variant 0.14
rpoC 763040 c.-330C>G upstream_gene_variant 0.18
rpoC 763049 c.-321G>A upstream_gene_variant 0.17
rpoC 763053 c.-317T>C upstream_gene_variant 0.17
rpoC 763067 c.-303C>T upstream_gene_variant 0.2
rpoC 763070 c.-300T>C upstream_gene_variant 0.2
rpoB 763074 p.Thr1090Val missense_variant 0.17
rpoC 763082 c.-288C>T upstream_gene_variant 0.17
rpoC 763085 c.-285C>A upstream_gene_variant 0.17
rpoC 763100 c.-270G>A upstream_gene_variant 0.17
rpoC 763103 c.-267G>C upstream_gene_variant 0.18
rpoC 763115 c.-255T>C upstream_gene_variant 0.17
rpoC 763127 c.-243G>C upstream_gene_variant 0.18
rpoC 763130 c.-240G>A upstream_gene_variant 0.15
rpoC 763133 c.-237G>C upstream_gene_variant 0.16
rpoC 763456 c.87A>G synonymous_variant 0.12
rpoC 763468 c.99G>C synonymous_variant 0.12
rpoC 763486 c.117T>C synonymous_variant 0.12
rpoC 763492 c.123G>C synonymous_variant 0.12
rpoC 763507 c.138G>C synonymous_variant 0.13
rpoC 763528 c.159G>C synonymous_variant 0.15
rpoC 763531 c.162G>C synonymous_variant 0.14
rpoC 763537 c.168C>G synonymous_variant 0.18
rpoC 763546 c.177A>G synonymous_variant 0.18
rpoC 763558 c.189C>T synonymous_variant 0.19
rpoC 763570 c.201G>T synonymous_variant 0.17
rpoC 763573 c.204G>C synonymous_variant 0.17
rpoC 763618 c.249C>T synonymous_variant 0.14
rpoC 763630 c.261G>T synonymous_variant 0.14
rpoC 763642 c.273G>C synonymous_variant 0.15
rpoC 763648 c.279C>T synonymous_variant 0.15
rpoC 763657 c.288G>A synonymous_variant 0.14
rpoC 763660 c.291T>G synonymous_variant 0.14
rpoC 763666 c.297G>A synonymous_variant 0.14
rpoC 764341 c.972G>T synonymous_variant 0.12
rpoC 764353 c.984G>T synonymous_variant 0.24
rpoC 764365 c.996C>T synonymous_variant 0.18
rpoC 764368 c.999C>A synonymous_variant 0.16
rpoC 764371 c.1002G>T synonymous_variant 0.17
rpoC 764377 c.1008C>G synonymous_variant 0.2
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.2
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.22
rpoC 764410 c.1041G>C synonymous_variant 0.22
rpoC 764428 c.1059G>C synonymous_variant 0.21
rpoC 764431 c.1062G>C synonymous_variant 0.24
rpoC 764434 c.1065A>G synonymous_variant 0.25
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.25
rpoC 764446 c.1077T>C synonymous_variant 0.25
rpoC 764449 c.1080G>C synonymous_variant 0.25
rpoC 764455 c.1086G>T synonymous_variant 0.27
rpoC 764458 c.1089G>C synonymous_variant 0.27
rpoC 764461 c.1092A>G synonymous_variant 0.27
rpoC 764497 c.1128A>G synonymous_variant 0.14
rpoC 764500 c.1131C>G synonymous_variant 0.14
rpoC 764602 c.1233C>T synonymous_variant 0.14
rpoC 764605 c.1236G>C synonymous_variant 0.14
rpoC 764611 c.1242G>T synonymous_variant 0.13
rpoC 764632 c.1263T>C synonymous_variant 0.12
rpoC 764647 c.1278C>T synonymous_variant 0.13
rpoC 764653 c.1284G>C synonymous_variant 0.12
rpoC 764662 c.1293G>C synonymous_variant 0.15
rpoC 764668 c.1299C>T synonymous_variant 0.17
rpoC 764671 c.1302G>T synonymous_variant 0.17
rpoC 764692 c.1323C>T synonymous_variant 0.18
rpoC 764713 c.1344G>T synonymous_variant 0.22
rpoC 764716 c.1347G>C synonymous_variant 0.23
rpoC 764752 c.1383G>C synonymous_variant 0.14
rpoC 764755 c.1386C>T synonymous_variant 0.14
rpoC 764758 c.1389C>G synonymous_variant 0.16
rpoC 764764 c.1395T>C synonymous_variant 0.15
rpoC 764781 p.Ser471Thr missense_variant 0.14
rpoC 764797 c.1428G>C synonymous_variant 0.12
rpoC 764804 p.Gln479Lys missense_variant 0.17
rpoC 764827 c.1458G>C synonymous_variant 0.12
rpoC 767017 c.3648C>G synonymous_variant 0.13
rpoC 767020 c.3651C>G synonymous_variant 0.13
rpoC 767035 c.3666G>C synonymous_variant 0.19
rpoC 767041 c.3672G>A synonymous_variant 0.19
rpoC 767062 c.3693C>T synonymous_variant 0.17
rpoC 767065 c.3696G>C synonymous_variant 0.18
rpoC 767066 c.3697C>T synonymous_variant 0.18
rpoC 767074 c.3705T>C synonymous_variant 0.19
rpoC 767080 c.3711G>T synonymous_variant 0.19
rpoC 767093 c.3724_3726delAGCinsTCG synonymous_variant 0.19
rpoC 767098 c.3729T>C synonymous_variant 0.19
rpoC 767104 c.3735C>G synonymous_variant 0.19
rpoC 767106 p.Asn1246Ile missense_variant 0.19
rpoC 767122 c.3753C>T synonymous_variant 0.18
rpoC 767125 c.3756G>C synonymous_variant 0.17
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800648 c.-161A>G upstream_gene_variant 0.13
rplC 800654 c.-155T>C upstream_gene_variant 0.15
rplC 800672 c.-137G>C upstream_gene_variant 0.16
rplC 800690 c.-119C>T upstream_gene_variant 0.15
rplC 800693 c.-116A>T upstream_gene_variant 0.17
rplC 800703 c.-106T>C upstream_gene_variant 0.21
rplC 800714 c.-95C>T upstream_gene_variant 0.16
rplC 800715 c.-94A>C upstream_gene_variant 0.22
rplC 800720 c.-89T>C upstream_gene_variant 0.2
rplC 800723 c.-86C>G upstream_gene_variant 0.2
rplC 800735 c.-74C>G upstream_gene_variant 0.19
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1304619 c.1689G>A synonymous_variant 0.13
fbiC 1304625 c.1695C>T synonymous_variant 0.16
fbiC 1304634 c.1704C>G synonymous_variant 0.17
fbiC 1304640 c.1710A>C synonymous_variant 0.18
fbiC 1304658 c.1728C>G synonymous_variant 0.21
fbiC 1304660 p.Tyr577Phe missense_variant 0.21
fbiC 1304662 p.Ser578Thr missense_variant 0.21
fbiC 1304671 c.1742delT frameshift_variant 0.24
fbiC 1304674 p.Gly582Arg missense_variant 0.25
fbiC 1304677 c.1747_1748insC frameshift_variant 0.25
fbiC 1304691 c.1761G>T synonymous_variant 0.26
fbiC 1304694 c.1764A>G synonymous_variant 0.26
fbiC 1304700 c.1770G>A synonymous_variant 0.26
fbiC 1304703 c.1773C>G synonymous_variant 0.25
fbiC 1304715 c.1785G>C synonymous_variant 0.23
fbiC 1304718 c.1788C>A synonymous_variant 0.23
fbiC 1304724 c.1794A>G synonymous_variant 0.18
fbiC 1304727 c.1797A>G synonymous_variant 0.18
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.38
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.35
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.35
rrs 1471925 n.81delC non_coding_transcript_exon_variant 0.35
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.36
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.38
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.36
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.41
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.46
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.43
rrs 1472030 n.185G>C non_coding_transcript_exon_variant 0.45
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.43
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 0.43
rrs 1472033 n.188A>T non_coding_transcript_exon_variant 0.43
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.43
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.45
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.48
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.48
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.48
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.43
rrs 1472057 n.212C>A non_coding_transcript_exon_variant 0.43
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.4
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.42
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.46
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.56
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.67
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.65
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.67
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.67
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.67
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.62
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.54
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.27
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.27
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.26
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.27
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.23
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.22
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.21
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.22
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.21
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.46
rrs 1472414 n.569C>T non_coding_transcript_exon_variant 0.47
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.45
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.45
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.42
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.45
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.45
rrs 1472449 n.604C>A non_coding_transcript_exon_variant 0.45
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.45
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.46
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.46
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.47
rrs 1472463 n.618G>T non_coding_transcript_exon_variant 0.48
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.47
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.48
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.5
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.56
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.64
rrs 1472599 n.754G>A non_coding_transcript_exon_variant 0.67
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.7
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.65
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.68
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.69
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.69
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.66
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.25
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.25
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.25
rrs 1472856 n.1012_1015delAGGC non_coding_transcript_exon_variant 0.25
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.27
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.27
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.27
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.29
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.63
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.68
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.68
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.69
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.67
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.78
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.73
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.73
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.7
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.69
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.69
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.69
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.69
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.65
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.67
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.68
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.67
rrs 1473282 n.1437C>T non_coding_transcript_exon_variant 0.6
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.58
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.24
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.26
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.42
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.42
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.42
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.54
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.7
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.71
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.71
rrl 1473830 n.173T>C non_coding_transcript_exon_variant 0.71
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.71
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.76
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.68
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.61
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.61
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.61
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.58
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.58
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.52
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.52
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.41
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.29
rrl 1474116 n.459G>A non_coding_transcript_exon_variant 0.33
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.42
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.52
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.5
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.54
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.52
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 0.52
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.55
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.55
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.55
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.55
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.55
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.57
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.62
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.64
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.55
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.52
rrl 1474288 n.631C>T non_coding_transcript_exon_variant 0.36
rrl 1474289 n.633_644delTTTTCCTCTCCG non_coding_transcript_exon_variant 0.38
rrl 1474305 n.648G>C non_coding_transcript_exon_variant 0.36
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.53
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.58
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.59
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.61
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.6
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.53
rrl 1474414 n.757C>T non_coding_transcript_exon_variant 0.5
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.52
rrl 1474450 n.793T>C non_coding_transcript_exon_variant 0.52
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.56
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.63
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.63
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.64
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.68
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.67
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.69
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.64
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.65
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.52
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.5
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.52
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.5
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.5
rrl 1474662 n.1005C>T non_coding_transcript_exon_variant 0.18
rrl 1474664 n.1007G>T non_coding_transcript_exon_variant 0.12
rrl 1474666 n.1009T>G non_coding_transcript_exon_variant 0.12
rrl 1474670 n.1013C>G non_coding_transcript_exon_variant 0.12
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.12
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.12
rrl 1474679 n.1022G>C non_coding_transcript_exon_variant 0.12
rrl 1474684 n.1027T>C non_coding_transcript_exon_variant 0.12
rrl 1474687 n.1030C>A non_coding_transcript_exon_variant 0.12
rrl 1474688 n.1031G>A non_coding_transcript_exon_variant 0.13
rrl 1474708 n.1052dupG non_coding_transcript_exon_variant 0.14
rrl 1474711 n.1054_1055insA non_coding_transcript_exon_variant 0.15
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.14
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.14
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.25
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.35
rrl 1474740 n.1083G>C non_coding_transcript_exon_variant 0.38
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 0.35
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.35
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.39
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.45
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.52
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.55
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.52
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.58
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.65
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.64
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.62
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.62
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.58
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.61
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.61
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.67
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.62
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.62
rrl 1474953 n.1296C>T non_coding_transcript_exon_variant 0.25
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.29
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.29
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.29
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.27
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.29
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.29
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.29
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.3
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.3
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.3
rrl 1475144 n.1487G>A non_coding_transcript_exon_variant 0.3
rrl 1475163 n.1506T>C non_coding_transcript_exon_variant 0.3
rrl 1475414 n.1757G>C non_coding_transcript_exon_variant 0.27
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.28
rrl 1475422 n.1765A>G non_coding_transcript_exon_variant 0.28
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.3
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.44
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.5
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.5
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.5
rrl 1475481 n.1824C>T non_coding_transcript_exon_variant 0.5
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.5
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.53
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.55
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.59
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.57
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.13
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.6
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.46
rrl 1475761 n.2104C>T non_coding_transcript_exon_variant 0.47
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.47
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.47
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.46
rrl 1475767 n.2110G>A non_coding_transcript_exon_variant 0.45
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.49
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.51
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.63
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.63
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.67
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.67
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.68
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.68
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.67
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.65
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.65
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.66
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.66
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.66
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.65
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.67
rrl 1476080 n.2423T>A non_coding_transcript_exon_variant 0.68
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.67
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.68
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.65
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.68
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.74
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.73
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.76
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.75
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.69
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.8
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.81
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.81
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.79
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.74
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.76
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.76
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.76
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.76
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.85
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.8
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.83
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.79
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.8
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.81
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.16
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.13
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.13
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.82
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.78
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.71
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.76
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.67
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.67
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.67
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.61
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.65
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.62
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.46
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.57
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.57
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.45
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.44
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.42
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.37
rrl 1476689 n.3032A>C non_coding_transcript_exon_variant 0.2
rrl 1476728 n.3071T>C non_coding_transcript_exon_variant 1.0
rpsA 1833811 c.270G>C synonymous_variant 0.13
rpsA 1833841 c.300C>G synonymous_variant 0.14
rpsA 1833847 c.306C>G synonymous_variant 0.14
rpsA 1833850 c.309C>G synonymous_variant 0.14
rpsA 1833928 c.387G>C synonymous_variant 0.19
rpsA 1833949 c.408T>C synonymous_variant 0.27
rpsA 1833955 c.414G>C synonymous_variant 0.26
rpsA 1833961 c.420C>T synonymous_variant 0.21
rpsA 1833970 c.429G>T synonymous_variant 0.21
rpsA 1833973 c.432G>T synonymous_variant 0.21
rpsA 1833976 c.435C>T synonymous_variant 0.21
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1833985 c.444G>C synonymous_variant 0.19
rpsA 1833991 c.450C>T synonymous_variant 0.19
rpsA 1833997 c.456G>C synonymous_variant 0.17
rpsA 1834000 c.459G>C synonymous_variant 0.17
rpsA 1834003 c.462G>A synonymous_variant 0.17
rpsA 1834009 c.468C>T synonymous_variant 0.16
rpsA 1834012 c.471G>C synonymous_variant 0.16
rpsA 1834015 c.474G>C synonymous_variant 0.16
rpsA 1834024 c.483G>C synonymous_variant 0.17
rpsA 1834030 c.489C>G synonymous_variant 0.18
rpsA 1834034 p.Ile165Val missense_variant 0.18
rpsA 1834069 c.528G>C synonymous_variant 0.13
rpsA 1834399 p.His286Gln missense_variant 0.13
rpsA 1834411 c.870T>G synonymous_variant 0.19
rpsA 1834417 c.876G>C synonymous_variant 0.19
rpsA 1834435 c.894G>C synonymous_variant 0.22
rpsA 1834447 c.906C>G synonymous_variant 0.26
rpsA 1834451 c.910T>C synonymous_variant 0.25
rpsA 1834474 c.933C>G synonymous_variant 0.25
rpsA 1834483 c.942G>A synonymous_variant 0.3
rpsA 1834489 c.948T>A synonymous_variant 0.31
rpsA 1834495 c.954G>A synonymous_variant 0.32
rpsA 1834501 c.960G>C synonymous_variant 0.3
rpsA 1834504 c.963G>T synonymous_variant 0.32
rpsA 1834513 c.972C>G synonymous_variant 0.37
rpsA 1834519 c.978G>C synonymous_variant 0.28
rpsA 1834522 c.981C>T synonymous_variant 0.25
rpsA 1834528 c.987T>C synonymous_variant 0.29
rpsA 1834540 c.999G>T synonymous_variant 0.27
rpsA 1834543 c.1002C>G synonymous_variant 0.23
rpsA 1834546 c.1005T>C synonymous_variant 0.22
rpsA 1834552 c.1011G>T synonymous_variant 0.2
rpsA 1834555 c.1014T>C synonymous_variant 0.21
rpsA 1834557 p.Ala339Gly missense_variant 0.21
rpsA 1834570 c.1029C>T synonymous_variant 0.24
rpsA 1834573 c.1032G>A synonymous_variant 0.24
rpsA 1834574 p.Met345Leu missense_variant 0.24
rpsA 1834600 c.1059G>C synonymous_variant 0.23
rpsA 1834606 c.1065C>T synonymous_variant 0.21
rpsA 1834612 c.1071G>T synonymous_variant 0.29
rpsA 1834619 c.1078T>C synonymous_variant 0.25
rpsA 1834627 c.1086C>G synonymous_variant 0.25
rpsA 1834633 c.1092A>G synonymous_variant 0.26
rpsA 1834639 c.1098T>C synonymous_variant 0.23
rpsA 1834645 c.1104C>T synonymous_variant 0.23
rpsA 1834650 p.Thr370Asn missense_variant 0.23
rpsA 1834653 p.Glu371Ala missense_variant 0.24
rpsA 1834663 c.1122C>T synonymous_variant 0.22
rpsA 1834667 p.Ala376Ser missense_variant 0.23
rpsA 1834688 c.1147_1149delAGTinsTCG synonymous_variant 0.24
rpsA 1834733 p.Ala398Pro missense_variant 0.29
rpsA 1834738 c.1197A>G synonymous_variant 0.29
rpsA 1834753 c.1212T>C synonymous_variant 0.29
rpsA 1834759 c.1218A>C synonymous_variant 0.17
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154166 p.Ala649Val missense_variant 0.23
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
katG 2156465 c.-354C>T upstream_gene_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2519305 c.1191A>G synonymous_variant 0.13
ahpC 2726579 c.387T>C synonymous_variant 0.11
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3878166 c.342C>A synonymous_variant 0.14
rpoA 3878172 c.336G>C synonymous_variant 0.14
rpoA 3878187 c.321C>A synonymous_variant 0.14
rpoA 3878190 c.318C>T synonymous_variant 0.15
rpoA 3878196 p.Glu104Ala missense_variant 0.14
rpoA 3878199 c.309T>C synonymous_variant 0.14
rpoA 3878202 c.306G>C synonymous_variant 0.14
rpoA 3878205 c.303T>C synonymous_variant 0.14
rpoA 3878217 p.Leu97Val missense_variant 0.14
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038795 p.Ser637Thr missense_variant 0.19
clpC1 4038812 c.1893T>C synonymous_variant 0.18
clpC1 4038815 c.1890G>A synonymous_variant 0.18
clpC1 4038842 c.1863G>C synonymous_variant 0.15
clpC1 4038845 p.Ser620Cys missense_variant 0.19
clpC1 4038860 c.1845G>C synonymous_variant 0.14
clpC1 4038878 c.1827A>G synonymous_variant 0.15
clpC1 4038884 c.1821C>T synonymous_variant 0.16
clpC1 4038890 c.1815G>A synonymous_variant 0.16
clpC1 4038896 c.1809C>A synonymous_variant 0.17
clpC1 4038905 c.1800A>G synonymous_variant 0.17
clpC1 4038911 c.1794G>T synonymous_variant 0.14
clpC1 4038914 c.1791G>C synonymous_variant 0.13
clpC1 4038923 c.1782A>G synonymous_variant 0.14
clpC1 4038926 c.1779G>C synonymous_variant 0.14
clpC1 4038932 c.1773G>T synonymous_variant 0.13
clpC1 4038941 c.1764G>C synonymous_variant 0.14
clpC1 4039526 c.1179G>C synonymous_variant 0.12
clpC1 4039575 p.Ala377Gly missense_variant 0.11
clpC1 4039586 c.1119G>C synonymous_variant 0.12
clpC1 4039601 c.1104G>T synonymous_variant 0.21
clpC1 4039610 c.1095G>C synonymous_variant 0.18
clpC1 4039616 c.1089G>T synonymous_variant 0.18
clpC1 4039619 c.1086G>T synonymous_variant 0.18
clpC1 4039622 c.1083C>T synonymous_variant 0.22
clpC1 4039649 c.1056G>C synonymous_variant 0.2
clpC1 4039652 c.1053G>C synonymous_variant 0.21
clpC1 4039661 c.1044T>C synonymous_variant 0.24
clpC1 4039670 c.1035G>T synonymous_variant 0.18
clpC1 4039673 c.1032G>C synonymous_variant 0.17
clpC1 4039682 c.1023C>T synonymous_variant 0.16
clpC1 4039685 c.1020C>T synonymous_variant 0.15
clpC1 4039691 c.1014G>C synonymous_variant 0.15
clpC1 4039694 c.1011G>C synonymous_variant 0.16
clpC1 4039697 c.1008C>T synonymous_variant 0.16
clpC1 4039700 c.1005C>T synonymous_variant 0.15
clpC1 4039724 c.981A>G synonymous_variant 0.24
clpC1 4039742 c.963C>T synonymous_variant 0.33
clpC1 4039748 c.957G>C synonymous_variant 0.32
clpC1 4039751 c.954A>G synonymous_variant 0.35
clpC1 4039757 c.948A>G synonymous_variant 0.33
clpC1 4039769 c.936C>T synonymous_variant 0.31
clpC1 4039775 c.930G>C synonymous_variant 0.28
clpC1 4039778 c.927A>G synonymous_variant 0.27
clpC1 4039781 c.924G>C synonymous_variant 0.27
clpC1 4039787 c.918G>C synonymous_variant 0.27
clpC1 4039793 c.912C>G synonymous_variant 0.28
clpC1 4039802 c.903G>T synonymous_variant 0.27
clpC1 4039814 c.891C>G synonymous_variant 0.27
clpC1 4039817 c.888A>C synonymous_variant 0.26
clpC1 4039820 c.885T>G synonymous_variant 0.26
clpC1 4039826 c.879C>G synonymous_variant 0.29
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.29
clpC1 4039850 c.855T>C synonymous_variant 0.26
clpC1 4039865 c.840T>C synonymous_variant 0.25
clpC1 4040426 c.279T>C synonymous_variant 0.12
clpC1 4040522 c.183T>C synonymous_variant 0.16
clpC1 4040528 c.177G>C synonymous_variant 0.16
clpC1 4040531 c.174T>A synonymous_variant 0.17
clpC1 4040534 c.171A>G synonymous_variant 0.17
clpC1 4040537 c.168G>C synonymous_variant 0.17
clpC1 4040540 c.165G>C synonymous_variant 0.17
clpC1 4040546 c.159G>T synonymous_variant 0.19
clpC1 4040560 c.145C>T synonymous_variant 0.15
clpC1 4040561 c.144A>G synonymous_variant 0.15
clpC1 4040570 c.135C>A synonymous_variant 0.15
clpC1 4040573 c.132T>C synonymous_variant 0.15
clpC1 4040576 c.129C>T synonymous_variant 0.15
clpC1 4040582 c.123G>C synonymous_variant 0.16
clpC1 4040585 c.120A>G synonymous_variant 0.16
clpC1 4040588 c.117T>C synonymous_variant 0.16
clpC1 4040591 c.114C>T synonymous_variant 0.17
clpC1 4040594 c.111G>C synonymous_variant 0.17
clpC1 4040600 c.103_105delTTAinsCTC synonymous_variant 0.18
clpC1 4040606 c.99T>C synonymous_variant 0.18
clpC1 4040615 c.90C>G synonymous_variant 0.2
clpC1 4040648 c.57G>A synonymous_variant 0.18
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241384 p.Pro508Thr missense_variant 0.82
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4249640 c.3127T>C synonymous_variant 0.96
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
ubiA 4269599 p.Glu79* stop_gained 0.12
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0