lineage | Count |
---|---|
lineage4.9 | 185 |
lineage4.1.2.1 | 13 |
lineage2.2.1.1 | 6 |
lineage4.3.2.1 | 7 |
lineage6 | 1 |
lineage4.3.3 | 7 |
lineage2.2.1 | 27 |
La1.6 | 1 |
La1.2 | 1 |
La1.8.1 | 5 |
lineage3 | 18 |
lineage1.2.2.1 | 3 |
lineage1.1.2 | 2 |
lineage4.3.2 | 2 |
lineage2.2.1;lineage4.9 | 3 |
lineage4.1;lineage4.9 | 2 |
lineage4.2.2.2 | 6 |
La1 | 1 |
3 | |
lineage4.1.1.3 | 7 |
lineage3.1.3 | 1 |
lineage4.1.2 | 4 |
lineage4.3.4.1 | 1 |
lineage2.2.1;lineage4 | 3 |
lineage4.3.4.2.1 | 6 |
La1.8.1;lineage4.9 | 1 |
lineage4.4.1.1 | 4 |
lineage4.5 | 1 |
lineage2.2.2 | 1 |
La1;lineage4.9 | 3 |
lineage4 | 7 |
lineage1.2.1.2 | 1 |
lineage1.1.2;lineage4.1.2.1;lineage4.1.3 | 1 |
lineage1.1.3.1 | 2 |
lineage4.3.3;lineage4.9 | 1 |
lineage1.1.1 | 2 |
La1;lineage4.1.2 | 1 |
lineage5.1.2 | 1 |
lineage3.1 | 1 |
lineage4.1.1.1 | 1 |
lineage3.1.2.2 | 1 |
lineage4.8;lineage4.9 | 2 |
lineage4.4.1.1.1 | 2 |
lineage6.1.3 | 2 |
lineage2.2;lineage4.9 | 1 |
La1.3 | 4 |
lineage1.2.2.2 | 1 |
lineage2;lineage4.9 | 1 |
lineage2.2.2;lineage4 | 2 |
lineage4.2.1 | 2 |
lineage4.2.2 | 1 |
lineage3;lineage4.9 | 1 |
lineage1.1.1;lineage4 | 1 |
lineage4.1.1.3;lineage4.9 | 2 |
lineage4.7 | 1 |
lineage4.8 | 3 |
lineage4.1.1.2 | 1 |
lineage4.1.4 | 1 |
La1;lineage2;lineage4.9 | 1 |
lineage4.8.1 | 1 |
lineage2.2.1;lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 375 |
ID | Drug resistance | Lineage | Country iso2 | SRR1175513 | Sensitive | lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | SAMN02350447 | Sensitive | lineage2.2.1.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR9787362 | Sensitive | lineage6 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR10993936 | Other | La1.6 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | SRR7236330 | Other | La1.8.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4769516 | Sensitive | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6045158 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SAMN02350450 | Sensitive | lineage1.2.2.1 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR1172358 | Sensitive | lineage1.1.2 | None | ERR5987396 | MDR-TB | lineage4.3.2 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR5341254 | Other | lineage4.2.2.2 | in | SRR13180382 | Other | La1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR363479 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | SRR5341319 | Other | lineage3 | None | ERR369159 | Other | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR137286 | Other | lineage4.9 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR1011489 | Sensitive | lineage2.2.1.1 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR363421 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR4820130 | Sensitive | lineage3 | None | ERR4816964 | HR-TB | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR3324331 | MDR-TB | lineage4.3.4.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR6982448 | Sensitive | lineage2.2.1;lineage4 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR176741 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR1791899 | Sensitive | La1.8.1;lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR4817434 | Other | lineage3 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR5341384 | HR-TB | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | SRR1049030 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4816868 | Other | lineage4.4.1.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR4819876 | Other | lineage4.3.4.2.1 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1062863 | Sensitive | lineage1.2.2.1 | None | SRR7236177 | Other | La1.8.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR1049031 | Sensitive | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR400326 | Other | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4800231 | Pre-XDR-TB | lineage2.2.1 | in | SRR6045371 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6045706 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1062860 | Sensitive | lineage2.2.1.1 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR4816100 | Sensitive | lineage1.1.2;lineage4.1.2.1;lineage4.1.3 | None | ERR4818272 | Other | lineage4.3.2 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR1049568 | Sensitive | lineage4.2.2.2 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR400538 | RR-TB | lineage5.1.2 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736834 | HR-TB | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR2100532 | Sensitive | lineage3 | None | SRR6045503 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR4796577 | HR-TB | None | SRR7070153 | Sensitive | lineage4.1.2.1 | None | ERR349300 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069922 | Other | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR373945 | Other | lineage4.9 | None | SRR15723110 | Sensitive | lineage2.2.1 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR6045642 | Other | lineage3.1.2.2 | None | SRR7069931 | Other | lineage4.2.2.2 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4821718 | Sensitive | lineage4.2.2.2 | gb | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR305201 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR1019130 | Sensitive | lineage4.3.2.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | SRR7617847 | Other | La1.8.1 | None | SRR6045832 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR7755767 | Sensitive | lineage4.3.3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR228175 | Sensitive | lineage3 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR7801321 | Sensitive | lineage4.3.4.2.1 | None | SRR16156817 | Other | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR400345 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR4821769 | Other | lineage4.1.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4831851 | HR-TB | lineage2.2.1 | vn | SRR1180996 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR4814639 | HR-TB | lineage4.9 | None | ERR3275190 | Other | lineage3 | nl | ERR363498 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR3276144 | Other | lineage3 | nl | SRR10808490 | Sensitive | lineage2.2.1.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | SRR1013637 | Sensitive | lineage2.2.2;lineage4 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4769552 | Sensitive | La1.3 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR4818952 | Sensitive | lineage3 | None | ERR363490 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR1011490 | Sensitive | lineage4.1.2 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR1140927 | Sensitive | lineage4.3.2.1 | None | SRR1013636 | Sensitive | lineage2.2.2;lineage4 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363453 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SAMN02350448 | Sensitive | lineage4.1.2 | za | SRR1180391 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR5067459 | HR-TB | lineage4.2.2 | None | SRR1049569 | Sensitive | lineage4.2.2.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR3324328 | MDR-TB | lineage2.2.1 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR1062861 | Sensitive | lineage4.1.2 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | ERR4769555 | Sensitive | La1.3 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR6046442 | Other | lineage3 | None | SAMN02350456 | Sensitive | lineage4.3.2.1 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR1063896 | HR-TB | None | ERR2514215 | Other | lineage2.2.1 | gb | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1011492 | Sensitive | lineage1.2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7069473 | Other | lineage4.1.1.2 | None | SRR5074060 | Sensitive | lineage2.2.1 | vn | ERR867566 | Other | lineage4.9 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR369157 | Sensitive | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR3324351 | HR-TB | lineage4.1.4 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR4769408 | Other | La1.3 | None | ERR363499 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR3324373 | MDR-TB | lineage2.2.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR9786076 | Other | lineage3 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR11462861 | Other | La1.8.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | ERR6866410 | HR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4818536 | Other | lineage4.9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR323066 | HR-TB | lineage4.9 | None | SAMN02380985 | Sensitive | lineage4.2.2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4820723 | Other | lineage4.4.1.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR349299 | Other | lineage4.9 | None | ERR349264 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR4816833 | Other | lineage4.1.1.3 | None | SRR1183054 | Sensitive | lineage4.9 | None |
---|