TB-Profiler result

Run: ERR4818624
Summary

Run ID: ERR4818624

Sample name:

Date: 01-04-2023 15:39:45

Number of reads: 1681092

Percentage reads mapped: 63.57

Strain: lineage4.3.4.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3 Euro-American (LAM) mainly-LAM None 1.0
lineage4.3.4 Euro-American (LAM) LAM RD174 1.0
lineage4.3.4.2 Euro-American (LAM) LAM1;LAM4;LAM11 RD174 1.0
lineage4.3.4.2.1 Euro-American (LAM) LAM11 RD174 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.24 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.18 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.15 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6140 p.Val301Leu missense_variant 1.0
gyrA 6526 c.-776T>C upstream_gene_variant 0.11
gyrA 6535 c.-767C>G upstream_gene_variant 0.12
gyrA 6541 c.-761C>T upstream_gene_variant 0.12
gyrB 6542 p.Ile435Leu missense_variant 0.12
gyrA 6550 c.-752A>T upstream_gene_variant 0.13
gyrA 6551 c.-751T>C upstream_gene_variant 0.13
gyrA 6571 c.-731T>C upstream_gene_variant 0.17
gyrA 6580 c.-722C>G upstream_gene_variant 0.11
gyrB 6582 p.Thr448Lys missense_variant 0.11
gyrB 6590 p.Arg451Ser missense_variant 0.11
gyrA 7066 c.-236G>C upstream_gene_variant 0.12
gyrA 7168 c.-134C>G upstream_gene_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 760646 c.840C>G synonymous_variant 0.12
rpoB 760655 c.849A>G synonymous_variant 0.14
rpoB 760661 c.855A>C synonymous_variant 0.14
rpoB 760670 c.864G>C synonymous_variant 0.14
rpoB 760674 c.868T>C synonymous_variant 0.14
rpoB 760679 c.873A>G synonymous_variant 0.13
rpoB 760683 c.877T>C synonymous_variant 0.12
rpoB 761234 c.1428G>C synonymous_variant 0.15
rpoB 761252 c.1446C>G synonymous_variant 0.12
rpoB 761255 c.1449T>G synonymous_variant 0.12
rpoB 761258 c.1452G>A synonymous_variant 0.12
rpoB 761261 c.1455G>C synonymous_variant 0.12
rpoB 761264 c.1458C>G synonymous_variant 0.12
rpoB 761273 c.1467T>C synonymous_variant 0.12
rpoB 761282 c.1476C>T synonymous_variant 0.12
rpoB 762002 c.2196C>G synonymous_variant 0.19
rpoB 762003 p.Asn733Gln missense_variant 0.28
rpoB 762011 c.2205G>C synonymous_variant 0.19
rpoB 762014 c.2208C>G synonymous_variant 0.17
rpoB 762053 c.2247T>C synonymous_variant 0.25
rpoB 762062 c.2256T>C synonymous_variant 0.23
rpoB 762068 c.2262C>T synonymous_variant 0.18
rpoB 762077 c.2271G>A synonymous_variant 0.16
rpoB 762080 c.2274G>C synonymous_variant 0.17
rpoB 762086 c.2280G>C synonymous_variant 0.21
rpoB 762114 p.Ile770Val missense_variant 0.2
rpoB 762128 c.2322G>C synonymous_variant 0.22
rpoB 762131 c.2325C>G synonymous_variant 0.24
rpoB 762140 c.2334G>C synonymous_variant 0.22
rpoB 762143 c.2337T>C synonymous_variant 0.22
rpoB 762149 c.2343G>T synonymous_variant 0.23
rpoB 762158 c.2352G>C synonymous_variant 0.25
rpoB 762167 c.2361T>C synonymous_variant 0.24
rpoB 762176 c.2370T>C synonymous_variant 0.29
rpoB 762185 c.2379G>C synonymous_variant 0.24
rpoB 762233 c.2427G>C synonymous_variant 0.23
rpoB 762245 c.2439G>C synonymous_variant 0.11
rpoB 762254 c.2448T>C synonymous_variant 0.26
rpoB 762257 c.2451C>G synonymous_variant 0.12
rpoB 762284 c.2478G>C synonymous_variant 0.12
rpoB 762293 c.2487T>C synonymous_variant 0.15
rpoB 762296 c.2490G>C synonymous_variant 0.15
rpoB 762314 c.2508C>T synonymous_variant 0.15
rpoB 762317 c.2511A>G synonymous_variant 0.12
rpoB 762341 c.2535G>C synonymous_variant 0.11
rpoB 762347 c.2541T>C synonymous_variant 0.11
rpoB 762350 c.2544C>G synonymous_variant 0.11
rpoB 762879 p.Met1025Leu missense_variant 0.18
rpoC 762917 c.-453C>G upstream_gene_variant 0.16
rpoC 762920 c.-450C>G upstream_gene_variant 0.15
rpoC 762923 c.-447C>G upstream_gene_variant 0.15
rpoC 762926 c.-444C>G upstream_gene_variant 0.21
rpoC 762929 c.-441G>T upstream_gene_variant 0.24
rpoC 762959 c.-411G>C upstream_gene_variant 0.13
rpoC 762962 c.-408C>T upstream_gene_variant 0.21
rpoC 762983 c.-387C>T upstream_gene_variant 0.17
rpoC 762989 c.-381G>C upstream_gene_variant 0.21
rpoC 762995 c.-375G>T upstream_gene_variant 0.19
rpoC 763031 c.-339T>C upstream_gene_variant 0.25
rpoC 763053 c.-317T>C upstream_gene_variant 0.26
rpoC 763058 c.-312C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.23
rpoB 763074 p.Thr1090Val missense_variant 0.23
rpoC 763082 c.-288C>T upstream_gene_variant 0.2
rpoC 763088 c.-282C>G upstream_gene_variant 0.24
rpoC 763094 c.-276G>C upstream_gene_variant 0.26
rpoC 763115 c.-255T>C upstream_gene_variant 0.21
rpoC 763486 c.117T>C synonymous_variant 0.12
rpoC 763528 c.159G>T synonymous_variant 0.16
rpoC 763531 c.162G>C synonymous_variant 0.23
rpoC 763534 c.165T>C synonymous_variant 0.23
rpoC 763537 c.168C>G synonymous_variant 0.2
rpoC 763546 c.177A>G synonymous_variant 0.22
rpoC 763570 c.201G>C synonymous_variant 0.16
rpoC 763594 c.225C>T synonymous_variant 0.15
rpoC 763603 c.234C>T synonymous_variant 0.15
rpoC 763618 c.249C>T synonymous_variant 0.13
rpoC 763636 c.267T>C synonymous_variant 0.11
rpoC 763660 c.291T>G synonymous_variant 0.16
rpoC 763666 c.297G>C synonymous_variant 0.15
rpoC 763669 c.300C>G synonymous_variant 0.12
rpoC 763717 c.348T>C synonymous_variant 0.11
rpoC 763732 c.363C>G synonymous_variant 0.11
rpoC 764371 c.1002G>C synonymous_variant 0.12
rpoC 764387 c.1018T>C synonymous_variant 0.13
rpoC 764405 c.1036A>C synonymous_variant 0.12
rpoC 764521 c.1152T>C synonymous_variant 0.12
rpoC 764536 c.1167G>C synonymous_variant 0.13
rpoC 764539 c.1170C>G synonymous_variant 0.12
rpoC 764566 c.1197C>G synonymous_variant 0.12
rpoC 764572 c.1203G>C synonymous_variant 0.11
rpoC 764575 c.1206T>G synonymous_variant 0.11
rpoC 764611 c.1242G>T synonymous_variant 0.11
rpoC 764632 c.1263T>C synonymous_variant 0.14
rpoC 764650 c.1281G>T synonymous_variant 0.14
rpoC 764653 c.1284G>C synonymous_variant 0.14
rpoC 764662 c.1293G>C synonymous_variant 0.12
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.13
rpoC 764791 c.1422C>G synonymous_variant 0.18
rpoC 764797 c.1428G>C synonymous_variant 0.19
rpoC 764803 c.1434C>G synonymous_variant 0.18
rpoC 764810 p.Pro481Ala missense_variant 0.2
rpoC 764815 c.1446A>G synonymous_variant 0.22
rpoC 764827 c.1458G>C synonymous_variant 0.23
rpoC 764857 c.1488G>C synonymous_variant 0.19
rpoC 764858 p.Leu497Met missense_variant 0.19
rpoC 764872 c.1503A>G synonymous_variant 0.15
rpoC 764887 c.1518G>C synonymous_variant 0.12
rpoC 764995 c.1626C>G synonymous_variant 0.95
rpoC 765814 c.2445A>T synonymous_variant 0.12
rpoC 765817 c.2448G>C synonymous_variant 0.11
rpoC 765820 c.2451G>C synonymous_variant 0.11
rpoC 765826 c.2457T>C synonymous_variant 0.13
rpoC 765832 c.2463G>A synonymous_variant 0.13
rpoC 765835 c.2466C>T synonymous_variant 0.14
rpoC 765865 c.2496C>T synonymous_variant 0.14
rpoC 765871 c.2502T>G synonymous_variant 0.15
rpoC 765875 p.Val836Ile missense_variant 0.15
rpoC 766309 c.2940G>C synonymous_variant 0.12
rpoC 766312 c.2943T>C synonymous_variant 0.12
rpoC 766315 c.2946C>G synonymous_variant 0.12
rpoC 766321 c.2952C>G synonymous_variant 0.11
rpoC 766348 c.2979A>G synonymous_variant 0.17
rpoC 766357 c.2988C>T synonymous_variant 0.13
rpoC 766381 c.3012C>T synonymous_variant 0.26
rpoC 766384 c.3015A>G synonymous_variant 0.29
rpoC 766390 c.3021C>T synonymous_variant 0.21
rpoC 766408 c.3039C>T synonymous_variant 0.26
rpoC 766426 c.3057C>T synonymous_variant 0.25
rpoC 766429 c.3061_3062insCGG disruptive_inframe_insertion 0.27
rpoC 766435 p.Glu1022Asp missense_variant 0.27
rpoC 766456 c.3087C>T synonymous_variant 0.27
rpoC 766459 c.3090G>T synonymous_variant 0.25
rpoC 766618 c.3249G>T synonymous_variant 0.13
rpoC 766624 c.3255G>T synonymous_variant 0.14
rpoC 766645 p.Glu1092Asp missense_variant 0.1
rpoC 766996 c.3627C>T synonymous_variant 0.13
rpoC 767002 c.3633G>C synonymous_variant 0.18
rpoC 767023 c.3654C>T synonymous_variant 0.15
rpoC 767041 c.3672G>C synonymous_variant 0.19
rpoC 767044 c.3675G>C synonymous_variant 0.18
rpoC 767056 c.3687C>G synonymous_variant 0.13
rpoC 767062 c.3693C>T synonymous_variant 0.12
rpoC 767065 c.3696G>C synonymous_variant 0.11
rpoC 767066 c.3697C>T synonymous_variant 0.11
rpoC 767071 c.3702C>G synonymous_variant 0.11
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.12
rpsL 781658 c.99A>G synonymous_variant 0.11
rpsL 781859 c.300T>C synonymous_variant 0.12
rpsL 781865 c.306G>C synonymous_variant 0.12
rpsL 781868 c.309T>C synonymous_variant 0.12
rpsL 781871 c.312G>C synonymous_variant 0.12
rpsL 781880 c.321C>G synonymous_variant 0.11
rpsL 781898 c.339A>C synonymous_variant 0.12
rpsL 781907 c.348T>C synonymous_variant 0.14
rplC 800672 c.-137G>C upstream_gene_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.26
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.26
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.25
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.28
rrs 1471929 n.84C>G non_coding_transcript_exon_variant 0.14
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.24
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.25
rrs 1471978 n.133C>T non_coding_transcript_exon_variant 0.12
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.14
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.14
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.12
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.16
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.17
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.3
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.45
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.25
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.12
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.13
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.28
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.29
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.21
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.22
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.44
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 0.28
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.34
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.34
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.15
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.15
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.15
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.18
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.13
rrs 1472580 n.735C>A non_coding_transcript_exon_variant 0.25
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.25
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.22
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.23
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.23
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.28
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.21
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.17
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.27
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.25
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.29
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.19
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.25
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.22
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.14
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.14
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.36
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.18
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.39
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.15
rrs 1472971 n.1126G>A non_coding_transcript_exon_variant 0.12
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.38
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.15
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.18
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.17
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.31
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.15
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.12
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.38
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.33
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.34
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.34
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.55
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.54
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.18
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.55
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.54
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.55
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.53
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.46
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.12
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.15
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.44
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.19
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.22
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.28
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.42
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.42
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.29
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.28
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.12
rrl 1473717 n.60G>T non_coding_transcript_exon_variant 0.15
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.25
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.26
rrl 1473758 n.101G>A non_coding_transcript_exon_variant 0.27
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.32
rrl 1473811 n.154C>T non_coding_transcript_exon_variant 0.32
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.28
rrl 1473815 n.158T>A non_coding_transcript_exon_variant 0.28
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.19
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.16
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.15
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.13
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.22
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.11
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.14
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.13
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.17
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.13
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.16
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.11
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.19
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.16
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.12
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.12
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.14
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.18
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.24
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.26
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.45
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.23
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.2
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.13
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.3
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.23
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.25
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.28
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.25
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.29
rrl 1474670 n.1013C>G non_coding_transcript_exon_variant 0.11
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.2
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.41
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.26
rrl 1474679 n.1022G>C non_coding_transcript_exon_variant 0.13
rrl 1474684 n.1027T>C non_coding_transcript_exon_variant 0.13
rrl 1474687 n.1030C>A non_coding_transcript_exon_variant 0.14
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.28
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.24
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.11
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.17
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.35
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.43
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.24
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.27
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.27
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.47
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.31
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.23
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.25
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.15
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.15
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.19
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 0.17
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 0.17
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.29
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.17
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.15
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.38
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.15
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.2
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.11
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.26
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.18
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.13
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.15
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.14
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.14
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.13
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.12
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.16
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.11
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.15
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.41
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.37
rrl 1475892 n.2235A>C non_coding_transcript_exon_variant 0.29
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.38
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.33
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.27
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.31
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.18
rrl 1475990 n.2333G>A non_coding_transcript_exon_variant 0.18
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.15
rrl 1476049 n.2392C>G non_coding_transcript_exon_variant 0.14
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.29
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.21
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.12
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.17
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 0.12
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.19
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.19
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.19
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.11
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.24
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.16
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.22
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.22
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.14
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.12
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.19
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.18
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.23
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.24
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.22
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.21
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.13
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.12
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.3
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.27
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.27
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.21
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.26
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.31
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.13
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.22
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.3
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.46
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.17
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.28
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.11
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.11
rrl 1476524 n.2867delC non_coding_transcript_exon_variant 0.16
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.14
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.29
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.25
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.33
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.33
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.28
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.27
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.23
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.26
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.16
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.24
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.12
rpsA 1833571 c.30A>G synonymous_variant 0.13
rpsA 1833589 c.48A>C synonymous_variant 0.13
rpsA 1833595 c.54T>C synonymous_variant 0.12
rpsA 1833596 p.Ser19Ala missense_variant 0.12
rpsA 1833607 c.66T>C synonymous_variant 0.15
rpsA 1833616 c.75A>C synonymous_variant 0.14
rpsA 1833619 c.78A>C synonymous_variant 0.14
rpsA 1833625 c.84A>G synonymous_variant 0.17
rpsA 1833646 c.105T>C synonymous_variant 0.17
rpsA 1833652 c.111C>T synonymous_variant 0.11
rpsA 1833742 c.201A>G synonymous_variant 0.13
rpsA 1833754 c.213G>A synonymous_variant 0.12
rpsA 1833787 c.246C>G synonymous_variant 0.14
rpsA 1833793 c.252C>T synonymous_variant 0.13
rpsA 1833802 c.261A>G synonymous_variant 0.12
rpsA 1833808 c.267G>C synonymous_variant 0.12
rpsA 1833811 c.270G>T synonymous_variant 0.12
rpsA 1833829 c.288A>G synonymous_variant 0.16
rpsA 1833832 c.291G>A synonymous_variant 0.16
rpsA 1833838 c.297G>C synonymous_variant 0.16
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833847 c.306C>G synonymous_variant 0.14
rpsA 1833850 c.309C>G synonymous_variant 0.14
rpsA 1833856 c.315A>G synonymous_variant 0.2
rpsA 1833874 c.333T>G synonymous_variant 0.14
rpsA 1833877 c.336C>G synonymous_variant 0.13
rpsA 1833886 c.345C>G synonymous_variant 0.15
rpsA 1833894 p.Ala118Glu missense_variant 0.21
rpsA 1833928 c.387G>C synonymous_variant 0.24
rpsA 1833952 c.411C>T synonymous_variant 0.19
rpsA 1833961 c.420C>G synonymous_variant 0.24
rpsA 1833970 c.429G>C synonymous_variant 0.19
rpsA 1833979 c.438T>C synonymous_variant 0.18
rpsA 1833985 c.444G>C synonymous_variant 0.16
rpsA 1833988 c.447C>G synonymous_variant 0.17
rpsA 1833994 c.453G>C synonymous_variant 0.2
rpsA 1834000 c.459G>C synonymous_variant 0.2
rpsA 1834015 c.474G>C synonymous_variant 0.21
rpsA 1834021 c.480C>T synonymous_variant 0.2
rpsA 1834030 c.489C>G synonymous_variant 0.27
rpsA 1834034 p.Ile165Val missense_variant 0.26
rpsA 1834069 c.528G>C synonymous_variant 0.24
rpsA 1834093 c.552G>C synonymous_variant 0.16
rpsA 1834099 c.558C>G synonymous_variant 0.12
rpsA 1834249 c.708T>C synonymous_variant 0.17
rpsA 1834261 c.720A>G synonymous_variant 0.21
rpsA 1834264 c.723G>C synonymous_variant 0.21
rpsA 1834294 c.753G>C synonymous_variant 0.15
rpsA 1834298 p.Gln253Glu missense_variant 0.15
rpsA 1834303 c.762T>C synonymous_variant 0.12
rpsA 1834327 c.786G>T synonymous_variant 0.12
rpsA 1834340 p.Met267Leu missense_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.12
rpsA 1834411 c.870T>C synonymous_variant 0.12
rpsA 1834451 c.910T>C synonymous_variant 0.12
rpsA 1834489 c.948T>C synonymous_variant 0.11
rpsA 1834528 c.987T>C synonymous_variant 0.14
rpsA 1834543 c.1002C>G synonymous_variant 0.16
rpsA 1834546 c.1005T>C synonymous_variant 0.15
rpsA 1834552 c.1011G>T synonymous_variant 0.11
rpsA 1834619 c.1078T>C synonymous_variant 0.12
rpsA 1834627 c.1086C>G synonymous_variant 0.11
rpsA 1834633 c.1092A>G synonymous_variant 0.11
rpsA 1834667 p.Ala376Ser missense_variant 0.14
rpsA 1834690 c.1149T>C synonymous_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155766 p.His116Asp missense_variant 0.1
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2519075 p.Ala321Ser missense_variant 0.11
folC 2746761 p.Gln280Lys missense_variant 0.1
thyA 3073868 p.Thr202Ala missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612009 p.Ala370Thr missense_variant 1.0
alr 3840719 c.702A>G synonymous_variant 1.0
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 0.12
clpC1 4038914 c.1791G>C synonymous_variant 0.11
clpC1 4038932 c.1773G>C synonymous_variant 0.13
clpC1 4038941 c.1764G>C synonymous_variant 0.12
clpC1 4038953 c.1752A>G synonymous_variant 0.12
clpC1 4038956 c.1749T>C synonymous_variant 0.14
clpC1 4038965 c.1740T>C synonymous_variant 0.15
clpC1 4038971 c.1734T>C synonymous_variant 0.12
clpC1 4038989 c.1716T>C synonymous_variant 0.11
clpC1 4038997 c.1708T>C synonymous_variant 0.12
clpC1 4039004 c.1701C>G synonymous_variant 0.12
clpC1 4039022 c.1683A>G synonymous_variant 0.13
clpC1 4039046 c.1659C>T synonymous_variant 0.19
clpC1 4039070 c.1635G>C synonymous_variant 0.17
clpC1 4039073 c.1632C>T synonymous_variant 0.18
clpC1 4039079 c.1626C>G synonymous_variant 0.16
clpC1 4039082 c.1623C>T synonymous_variant 0.16
clpC1 4039085 c.1620A>G synonymous_variant 0.17
clpC1 4039091 c.1614G>T synonymous_variant 0.16
clpC1 4039097 c.1608G>C synonymous_variant 0.17
clpC1 4039100 c.1605C>T synonymous_variant 0.17
clpC1 4039106 c.1599G>C synonymous_variant 0.17
clpC1 4039121 c.1584T>C synonymous_variant 0.15
clpC1 4039133 c.1572C>G synonymous_variant 0.15
clpC1 4039142 c.1563A>G synonymous_variant 0.11
clpC1 4039145 c.1560G>C synonymous_variant 0.11
clpC1 4039169 p.Glu512Asp missense_variant 0.12
clpC1 4039172 c.1533A>G synonymous_variant 0.12
clpC1 4039178 c.1527G>C synonymous_variant 0.13
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.12
clpC1 4039187 c.1518G>T synonymous_variant 0.12
clpC1 4039199 p.Ala502Glu missense_variant 0.14
clpC1 4039223 c.1482C>T synonymous_variant 0.12
clpC1 4039427 p.Glu426Asp missense_variant 0.12
clpC1 4039430 c.1275T>C synonymous_variant 0.12
clpC1 4039484 c.1221T>C synonymous_variant 0.11
clpC1 4039553 c.1152C>G synonymous_variant 0.15
clpC1 4039559 c.1146C>G synonymous_variant 0.16
clpC1 4039570 p.Met379Leu missense_variant 0.13
clpC1 4039571 c.1134G>C synonymous_variant 0.12
clpC1 4039574 p.Ala377Gly missense_variant 0.12
clpC1 4039586 c.1119G>C synonymous_variant 0.13
clpC1 4039598 c.1107C>T synonymous_variant 0.12
clpC1 4039616 c.1089G>C synonymous_variant 0.14
clpC1 4039636 p.Glu357Lys missense_variant 0.12
clpC1 4039649 c.1056G>C synonymous_variant 0.19
clpC1 4039670 c.1035G>C synonymous_variant 0.19
clpC1 4039682 c.1023C>G synonymous_variant 0.16
clpC1 4039688 c.1017G>A synonymous_variant 0.18
clpC1 4039694 c.1011G>C synonymous_variant 0.24
clpC1 4039724 c.981A>G synonymous_variant 0.23
clpC1 4039733 c.972G>C synonymous_variant 0.17
clpC1 4039748 c.957G>C synonymous_variant 0.13
clpC1 4039751 c.954A>G synonymous_variant 0.2
clpC1 4039757 c.948A>G synonymous_variant 0.14
clpC1 4039760 c.945T>C synonymous_variant 0.14
clpC1 4039766 c.939T>C synonymous_variant 0.13
clpC1 4039769 c.936C>G synonymous_variant 0.15
clpC1 4039778 c.927A>G synonymous_variant 0.15
clpC1 4039817 c.888A>C synonymous_variant 0.13
clpC1 4039820 c.885T>G synonymous_variant 0.13
clpC1 4039831 c.874T>C synonymous_variant 0.13
clpC1 4039832 c.873C>G synonymous_variant 0.11
clpC1 4039865 c.840T>C synonymous_variant 0.14
clpC1 4039898 c.807C>G synonymous_variant 0.16
clpC1 4039904 c.801A>G synonymous_variant 0.15
clpC1 4039913 c.792C>T synonymous_variant 0.13
clpC1 4039931 c.774T>C synonymous_variant 0.13
clpC1 4039937 c.768G>C synonymous_variant 0.13
clpC1 4039943 c.762G>C synonymous_variant 0.12
clpC1 4039946 c.759A>T synonymous_variant 0.12
clpC1 4039952 c.753T>C synonymous_variant 0.12
clpC1 4039955 c.750G>C synonymous_variant 0.12
clpC1 4039958 c.747G>C synonymous_variant 0.12
clpC1 4040090 c.615T>C synonymous_variant 0.11
clpC1 4040108 c.597G>C synonymous_variant 0.13
clpC1 4040117 c.588A>G synonymous_variant 0.17
clpC1 4040124 p.Glu194Ser missense_variant 0.13
clpC1 4040138 c.567G>C synonymous_variant 0.17
clpC1 4040144 c.561G>C synonymous_variant 0.17
clpC1 4040158 p.Met183Leu missense_variant 0.16
clpC1 4040159 c.546G>C synonymous_variant 0.13
clpC1 4040162 c.543G>C synonymous_variant 0.13
clpC1 4040166 p.Ala180Gln missense_variant 0.14
clpC1 4040168 c.537G>C synonymous_variant 0.13
clpC1 4040171 c.534C>G synonymous_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0