EBG00000313325 - n.838T>C
Drug resistance types
70 Sensitive
47 RR-TB
42 HR-TB
29 MDR-TB
14 Pre-XDR-TB
2 XDR-TB
95 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 55 |
| lineage4.9 | 94 |
| lineage4.4.1.2 | 2 |
| lineage4.3.3;lineage4.8 | 3 |
| lineage4.6.2.2 | 2 |
| lineage3 | 10 |
| La1.8.1 | 9 |
| lineage4.6.5 | 2 |
| lineage4.1.2.1 | 5 |
| lineage1.1.1 | 2 |
| lineage4.3.4.1 | 3 |
| lineage4.2.1 | 4 |
| lineage4.8.1 | 1 |
| lineage2.2.1 | 33 |
| lineage4.1.1.3 | 7 |
| lineage4.6.1.2 | 3 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage4.3.2.1 | 3 |
| lineage1.2.2.2 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.3 | 5 |
| La1.7.X-unk4 | 1 |
| lineage3.1.1 | 4 |
| lineage4.2.1.1 | 1 |
| La1.7.1 | 2 |
| lineage4.7 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.8;lineage4.9 | 1 |
| lineage4.1.2 | 2 |
| La1.3 | 3 |
| lineage4 | 3 |
| La1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.2 | 3 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage1.2.1.2 | 2 |
| lineage2;lineage4 | 1 |
| 1 | |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.2 | 4 |
| lineage6.1.3 | 1 |
| lineage4.3.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage6.1.2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 5 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage1.1.3.2 | 1 |
| La1.2 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 299 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4816852 | Other | lineage4.9 | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR978756 | Other | lineage4.8 | None | SRR1180440 | Other | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | ERR4816964 | HR-TB | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR9786076 | Other | lineage3 | None | ERR978747 | Other | lineage4.8 | None | SRR11462861 | Other | La1.8.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR2229811 | Other | lineage4.8 | dk | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR6046141 | Other | lineage4.9 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR4816322 | Other | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR5908124 | Other | lineage4.8 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR3439489 | RR-TB | La1.8.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4769439 | HR-TB | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175474 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | SRR1792025 | Other | La1.8.1 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR2229148 | Other | lineage4.8 | dk | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR14801720 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR473323 | HR-TB | lineage4.9 | None | DRR034348 | Other | lineage2.2.1 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR21469202 | Other | La1.7.1 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR8600288 | Other | La1.8.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR1181403 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR978694 | Other | lineage4.8 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | ERR9786276 | Sensitive | lineage4.8 | None | SRR1180345 | Other | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR2228838 | Other | lineage4.8 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR7236134 | Other | La1.8.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR978735 | Other | lineage4.8 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR4769514 | Other | La1.3 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR978727 | Other | lineage4.8 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR911930 | Other | lineage4.8 | None | SRR7496471 | Sensitive | lineage4 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | ERR4796351 | Sensitive | lineage4.9 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR2228910 | Other | lineage4.8 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR1173421 | Other | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR4819546 | HR-TB | lineage3 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR2512423 | Other | lineage4.1.1.3 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR10614047 | Sensitive | lineage4.9 | None | ERR978752 | Other | lineage4.8 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR1184329 | Other | lineage4.9 | None | ERR270777 | HR-TB | lineage4.1.2 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR978734 | RR-TB | lineage4.8 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | ERR1023509 | MDR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR2100532 | Sensitive | lineage3 | None | ERR978761 | Other | lineage4.8 | None | ERR978760 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR18572455 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR2229436 | Other | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR4828879 | HR-TB | lineage3 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR4769423 | Other | La1.3 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR228175 | Sensitive | lineage3 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR8975044 | Other | lineage4.1.1.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR978748 | Other | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR5087596 | Other | La1.8.1 | None | ERR4798823 | HR-TB | lineage4 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR6152980 | HR-TB | lineage4.8 | ca | SRR023450 | RR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR5087846 | Other | La1.8.1 | None | ERR4812328 | Other | lineage4.3.3 | pe | SRR1181283 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR21469200 | Other | La1.7.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR4815816 | Other | lineage4.5 | gb | SRR20969475 | Other | lineage1.2.1.2 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4815471 | HR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR1180250 | Other | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR2229541 | Other | lineage4.8 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR2229366 | Other | lineage4.8 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR2228899 | Other | lineage4.8 | None | ERR2228900 | Other | lineage4.8 | None | ERR4769418 | Other | La1.2 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR4033549 | Other | lineage2.2.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR911929 | Other | lineage4.8 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR978746 | RR-TB | lineage4.8 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | ERR216978 | Sensitive | lineage4.3.4.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR2229147 | Other | lineage4.8 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | ERR4769442 | Sensitive | lineage4.9 | None | SAMEA3501046 | RR-TB | lineage4.8 | None |
|---|
