Run ID: ERR3439489
Sample name:
Date: 01-04-2023 02:09:15
Number of reads: 807185
Percentage reads mapped: 44.61
Strain: La1.8.1
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.26 | rifampicin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.87 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.6 | kanamycin, capreomycin, aminoglycosides, amikacin |
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5390 | p.Asp51Asn | missense_variant | 0.13 |
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8741 | c.1440C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 760713 | p.Ala303Thr | missense_variant | 0.15 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.19 |
rpoB | 761027 | c.1221A>C | synonymous_variant | 0.23 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.22 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.22 |
rpoB | 761046 | p.Ile414Val | missense_variant | 0.2 |
rpoB | 761051 | c.1245G>A | synonymous_variant | 0.19 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.19 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.2 |
rpoB | 761088 | c.1282_1284delAGCinsTCG | synonymous_variant | 0.2 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.19 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.2 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.28 |
rpoB | 761133 | c.1327_1329delTTGinsCTC | synonymous_variant | 0.28 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.28 |
rpoB | 761153 | c.1347G>C | synonymous_variant | 0.29 |
rpoB | 761162 | c.1356G>C | synonymous_variant | 0.26 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.16 |
rpoB | 761174 | c.1368T>C | synonymous_variant | 0.12 |
rpoB | 761177 | c.1371G>C | synonymous_variant | 0.12 |
rpoB | 761183 | c.1377T>C | synonymous_variant | 0.12 |
rpoB | 761186 | p.Glu460Asp | missense_variant | 0.12 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.13 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.13 |
rpoB | 761196 | p.Leu464Val | missense_variant | 0.12 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.12 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.12 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.14 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.14 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.15 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.16 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.16 |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.16 |
rpoB | 762084 | p.Ala760Lys | missense_variant | 0.16 |
rpoB | 762105 | p.Ile767Leu | missense_variant | 0.15 |
rpoC | 762854 | c.-516G>C | upstream_gene_variant | 0.2 |
rpoC | 762857 | c.-513C>G | upstream_gene_variant | 0.2 |
rpoB | 762858 | p.Thr1018Ser | missense_variant | 0.2 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.22 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.27 |
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 0.26 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.26 |
rpoC | 762932 | c.-438G>C | upstream_gene_variant | 0.27 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.32 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.31 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.28 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.14 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.13 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.12 |
rpoC | 763504 | c.135C>G | synonymous_variant | 0.12 |
rpoC | 763507 | c.138G>C | synonymous_variant | 0.12 |
rpoC | 763511 | p.Cys48Gly | missense_variant | 0.12 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.12 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.14 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.14 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.17 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.17 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.15 |
rpoC | 763600 | c.231C>G | synonymous_variant | 0.12 |
rpoC | 763606 | c.237C>G | synonymous_variant | 0.12 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.12 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.18 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.35 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.39 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.4 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.43 |
rpoC | 764722 | c.1353G>C | synonymous_variant | 0.41 |
rpoC | 764740 | p.Met457Ile | missense_variant | 0.36 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.36 |
rpoC | 764749 | c.1380G>C | synonymous_variant | 0.35 |
rpoC | 764750 | p.Val461Ile | missense_variant | 0.35 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.32 |
rpoC | 764760 | p.Asn464Ser | missense_variant | 0.32 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.32 |
rpoC | 764780 | p.Ser471Ala | missense_variant | 0.29 |
rpoC | 764797 | c.1428G>C | synonymous_variant | 0.2 |
rpoC | 766310 | p.Arg981Cys | missense_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.16 |
rpsL | 781685 | c.126G>C | synonymous_variant | 0.16 |
rpsL | 781706 | c.147T>C | synonymous_variant | 0.16 |
rpsL | 781709 | c.150G>C | synonymous_variant | 0.16 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.17 |
rpsL | 781721 | c.162C>T | synonymous_variant | 0.16 |
rpsL | 781728 | c.169_171delTTGinsCTC | synonymous_variant | 0.15 |
rpsL | 781731 | p.Thr58Ser | missense_variant | 0.15 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.21 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.22 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.21 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.38 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.37 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.35 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.35 |
rpsL | 781835 | c.276T>C | synonymous_variant | 0.36 |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.32 |
rpsL | 781860 | p.Ser101Ala | missense_variant | 0.32 |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.33 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.35 |
rpsL | 781876 | p.Gly106Ala | missense_variant | 0.36 |
rpsL | 781880 | c.321C>G | synonymous_variant | 0.38 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.39 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.38 |
rpsL | 781901 | c.342C>T | synonymous_variant | 0.32 |
rpsL | 781907 | c.348T>C | synonymous_variant | 0.33 |
rpsL | 781916 | c.357T>G | synonymous_variant | 0.24 |
rpsL | 781921 | p.Lys121Met | missense_variant | 0.24 |
rplC | 800612 | c.-197A>T | upstream_gene_variant | 0.25 |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.25 |
rplC | 800631 | c.-178_-176delTATinsGTG | upstream_gene_variant | 0.25 |
rplC | 800648 | c.-161A>G | upstream_gene_variant | 0.4 |
rplC | 800651 | c.-158G>C | upstream_gene_variant | 0.4 |
rplC | 800654 | c.-155T>C | upstream_gene_variant | 0.43 |
rplC | 800667 | c.-142_-140delTCGinsAGC | upstream_gene_variant | 0.46 |
rplC | 800672 | c.-137G>C | upstream_gene_variant | 0.46 |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.5 |
rplC | 800702 | c.-107G>T | upstream_gene_variant | 0.46 |
rplC | 800703 | c.-106T>G | upstream_gene_variant | 0.46 |
rplC | 800715 | c.-94_-92delATCinsGTG | upstream_gene_variant | 0.4 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.4 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.4 |
rplC | 800729 | c.-80G>C | upstream_gene_variant | 0.38 |
rplC | 800733 | c.-76A>G | upstream_gene_variant | 0.4 |
rplC | 800738 | c.-71T>C | upstream_gene_variant | 0.4 |
rplC | 800742 | c.-67G>T | upstream_gene_variant | 0.4 |
rplC | 800753 | c.-56C>T | upstream_gene_variant | 0.38 |
rplC | 800754 | c.-55A>C | upstream_gene_variant | 0.38 |
rplC | 800762 | c.-47T>C | upstream_gene_variant | 0.3 |
rplC | 800767 | c.-41_-36delCAGCGT | upstream_gene_variant | 0.33 |
rplC | 800893 | p.Val29Ile | missense_variant | 0.12 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
embR | 1417369 | c.-22C>A | upstream_gene_variant | 0.15 |
atpE | 1460860 | c.-185C>A | upstream_gene_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472582 | n.737G>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472666 | n.821G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472674 | n.829T>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472686 | n.841G>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472694 | n.849C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472956 | n.1111T>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472990 | n.1145A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.81 |
rrs | 1473101 | n.1256C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473109 | n.1264T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474265 | n.608G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474275 | n.618T>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474281 | n.624A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474284 | n.629_640delCTCCTTTTCCTC | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474301 | n.644G>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474303 | n.646A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474305 | n.648G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474306 | n.649A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474308 | n.653_654delTG | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474316 | n.659T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474354 | n.697C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474355 | n.698A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474359 | n.702C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474466 | n.809G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474675 | n.1018C>A | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474676 | n.1019T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474709 | n.1053_1056delTGGT | non_coding_transcript_exon_variant | 0.73 |
rrl | 1474717 | n.1060_1061insGTGAG | non_coding_transcript_exon_variant | 0.73 |
rrl | 1474722 | n.1065T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474723 | n.1066G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474736 | n.1079C>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1474751 | n.1094G>A | non_coding_transcript_exon_variant | 0.72 |
rrl | 1474752 | n.1096delA | non_coding_transcript_exon_variant | 0.72 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474770 | n.1113G>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.79 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474800 | n.1143T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474920 | n.1263G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475696 | n.2039T>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1475703 | n.2046A>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475747 | n.2090A>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475750 | n.2093A>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475758 | n.2101A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475760 | n.2103C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475764 | n.2107A>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475767 | n.2110G>A | non_coding_transcript_exon_variant | 0.79 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475781 | n.2124T>G | non_coding_transcript_exon_variant | 0.81 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476103 | n.2446C>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476105 | n.2450delA | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476540 | n.2883C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476544 | n.2887T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476566 | n.2909A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.5 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.14 |
rpsA | 1834261 | c.720A>C | synonymous_variant | 0.18 |
rpsA | 1834279 | p.Asp246Glu | missense_variant | 0.2 |
rpsA | 1834285 | c.744G>C | synonymous_variant | 0.15 |
rpsA | 1834286 | c.745_746delTCinsAG | synonymous_variant | 0.15 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.15 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.14 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.14 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.14 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.13 |
rpsA | 1834331 | p.Asp264Ser | missense_variant | 0.28 |
rpsA | 1834339 | p.Asp266Glu | missense_variant | 0.29 |
rpsA | 1834340 | p.Met267Leu | missense_variant | 0.29 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.25 |
rpsA | 1834354 | c.813G>C | synonymous_variant | 0.24 |
rpsA | 1834357 | c.816T>C | synonymous_variant | 0.24 |
rpsA | 1834361 | c.820_822delTTGinsCTC | synonymous_variant | 0.24 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.24 |
rpsA | 1834378 | c.837T>G | synonymous_variant | 0.24 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.2 |
rpsA | 1834397 | p.His286Val | missense_variant | 0.2 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.24 |
rpsA | 1834423 | c.882G>T | synonymous_variant | 0.21 |
rpsA | 1834427 | p.Ile296Val | missense_variant | 0.21 |
rpsA | 1834431 | p.Val297Ala | missense_variant | 0.2 |
rpsA | 1834447 | c.906C>G | synonymous_variant | 0.2 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.2 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168647 | p.Val656Met | missense_variant | 0.14 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
Rv2752c | 3065988 | p.Glu68Asp | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.14 |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.15 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.15 |
rpoA | 3878316 | p.Thr64Ser | missense_variant | 0.14 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.14 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.15 |
rpoA | 3878334 | c.174T>C | synonymous_variant | 0.15 |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.14 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.14 |
rpoA | 3878352 | c.156C>G | synonymous_variant | 0.14 |
rpoA | 3878364 | c.144A>G | synonymous_variant | 0.15 |
rpoA | 3878367 | c.141C>G | synonymous_variant | 0.15 |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.15 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.18 |
rpoA | 3878379 | c.129G>C | synonymous_variant | 0.17 |
rpoA | 3878382 | c.126G>C | synonymous_variant | 0.14 |
rpoA | 3878394 | c.114G>C | synonymous_variant | 0.14 |
rpoA | 3878400 | c.108T>C | synonymous_variant | 0.14 |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.14 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
ddn | 3986981 | c.138C>T | synonymous_variant | 0.17 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.14 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.2 |
clpC1 | 4039916 | c.789T>C | synonymous_variant | 0.2 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.19 |
clpC1 | 4039937 | p.Val256Ile | missense_variant | 0.21 |
clpC1 | 4039940 | c.765G>C | synonymous_variant | 0.21 |
clpC1 | 4039946 | c.759A>C | synonymous_variant | 0.21 |
clpC1 | 4039949 | c.756G>C | synonymous_variant | 0.2 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.2 |
clpC1 | 4039955 | c.750G>C | synonymous_variant | 0.23 |
clpC1 | 4039960 | p.Thr249Ser | missense_variant | 0.28 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.37 |
clpC1 | 4040000 | p.His235Lys | missense_variant | 0.44 |
clpC1 | 4040003 | c.702G>C | synonymous_variant | 0.44 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.44 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.41 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.4 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.4 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.41 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.35 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.36 |
clpC1 | 4040069 | c.636G>C | synonymous_variant | 0.36 |
clpC1 | 4040083 | p.Thr208Ser | missense_variant | 0.38 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 0.38 |
clpC1 | 4040090 | c.615T>C | synonymous_variant | 0.38 |
clpC1 | 4040096 | p.Val203Ile | missense_variant | 0.38 |
clpC1 | 4040117 | c.588A>G | synonymous_variant | 0.29 |
clpC1 | 4040129 | c.576C>G | synonymous_variant | 0.23 |
clpC1 | 4040135 | c.570C>G | synonymous_variant | 0.22 |
clpC1 | 4040330 | c.375C>G | synonymous_variant | 0.12 |
clpC1 | 4040357 | c.348T>C | synonymous_variant | 0.12 |
clpC1 | 4040363 | c.342A>C | synonymous_variant | 0.14 |
clpC1 | 4040387 | c.318A>G | synonymous_variant | 0.11 |
clpC1 | 4040393 | c.312G>C | synonymous_variant | 0.11 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embC | 4242981 | p.Met1040Thr | missense_variant | 1.0 |
embA | 4244183 | c.951G>T | synonymous_variant | 0.15 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246406 | c.-108G>A | upstream_gene_variant | 0.14 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4249626 | p.Gly1038Glu | missense_variant | 0.12 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |