lineage | Count |
---|---|
lineage4.8 | 22 |
lineage4.1.2.1 | 13 |
lineage4.3.2 | 1 |
lineage2.2.1 | 64 |
lineage3.1.1 | 12 |
lineage1.1.2 | 3 |
lineage4.3.1.1 | 4 |
lineage4.1.2 | 7 |
lineage4.3;lineage4.9 | 1 |
lineage4 | 2 |
lineage3 | 29 |
lineage4.3.3 | 14 |
lineage4.9 | 37 |
lineage4.1.1.3.1 | 2 |
lineage4.4.2 | 2 |
lineage3.1.2.1 | 3 |
La1.3 | 5 |
lineage4.1.1.1 | 5 |
lineage4.8.2 | 2 |
lineage4.1.1.3 | 7 |
lineage4.3.2.1 | 2 |
lineage4.4.1.1 | 7 |
lineage4.4.1.1.1 | 3 |
lineage1.2.1.2.1 | 2 |
lineage4.3.4.1;lineage4.9 | 2 |
lineage2.2.2 | 7 |
lineage4.6.2.2 | 4 |
lineage4.3.4.1 | 6 |
lineage4.3 | 1 |
lineage4.6.5 | 1 |
M.canetti;lineage4.9 | 1 |
La1.8.1 | 9 |
lineage4.3.4.2 | 1 |
La1;lineage4.9 | 1 |
lineage4.1.2.1;lineage4.9 | 1 |
lineage4.4.1.2 | 1 |
lineage4.8.1 | 2 |
lineage4.6.1.2 | 5 |
lineage4.1.1.3.1;lineage4.9 | 1 |
lineage4.2.1.1;lineage4.3.3 | 1 |
lineage4.2.2.2 | 5 |
lineage4.3.4.2.1 | 4 |
lineage3.1.2.2 | 2 |
lineage5.1.1 | 1 |
lineage1.2.2.2 | 6 |
lineage6.1.3 | 1 |
lineage3;lineage4 | 1 |
La2 | 1 |
La1.7.1 | 3 |
lineage4.5 | 2 |
lineage4.7 | 2 |
lineage4.2.1 | 4 |
lineage4.3.3;lineage4.8 | 4 |
lineage4.6.1.1 | 1 |
lineage4.2.2 | 2 |
lineage4.1.1.2 | 1 |
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
lineage1.1.2;lineage6.2.3 | 1 |
lineage2.2.1.1 | 3 |
lineage1.2.1.1 | 2 |
lineage4.6 | 1 |
lineage3.1.1;lineage4 | 1 |
lineage4.2.1.1 | 2 |
lineage6.1.2 | 1 |
lineage4.3.3;lineage4.9 | 1 |
lineage2.2.1.2 | 1 |
lineage3.1.2.1;lineage4.9 | 1 |
lineage1.1.1.1 | 1 |
lineage3.1.3 | 1 |
lineage1.1.3.1 | 1 |
lineage4.1.3 | 1 |
spoligotype | Count |
---|---|
None | 352 |
ID | Drug resistance | Lineage | Country iso2 | SRR6855695 | Sensitive | lineage4.8 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10796561 | Other | lineage4.3.2 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | ERR2446580 | Sensitive | lineage3.1.1 | nl | SRR11567803 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | ERR3275321 | Sensitive | lineage3.1.1 | nl | SRR11349193 | RR-TB | lineage4.1.2 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR10762318 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR3675565 | Other | lineage4 | None | SRR13180204 | Other | lineage3 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR7070080 | Pre-XDR-TB | lineage3 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR4769408 | Other | La1.3 | None | ERR9117740 | Other | lineage3.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR7131114 | Other | lineage4.1.2 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR7131121 | Other | lineage4.3.3 | None | ERR867567 | RR-TB | lineage3 | None | SRR18002976 | Other | lineage2.2.1 | None | ERR10796623 | Other | lineage4.1.1.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR10315696 | Sensitive | lineage4.3.2.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR10796563 | Other | lineage4.3.3 | None | SRR9971201 | MDR-TB | lineage4.4.1.1.1 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR7069128 | Other | lineage1.2.1.2.1 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | ERR4816667 | Other | lineage2.2.2 | None | SRR7131251 | Other | lineage2.2.1 | None | SRR16157123 | Other | lineage4.9 | None | ERR9117699 | Other | lineage4.1.2.1 | None | SRR11342689 | Other | lineage4.1.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | SRR7131004 | Other | lineage4.6.2.2 | None | ERR10796582 | Other | lineage4.3.4.1 | None | ERR10796593 | Other | lineage4.3 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR4769552 | Sensitive | La1.3 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6045705 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR4769516 | Sensitive | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR1180446 | Other | lineage4.9 | None | SRR1183080 | Other | lineage4.9 | None | SRR14179705 | Pre-XDR-TB | lineage3 | None | ERR10796554 | Sensitive | lineage4.1.2 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR3675527 | Other | lineage4.9 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR7069027 | MDR-TB | lineage4.3.4.2 | None | SRR1792012 | Other | La1.8.1 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR10796577 | Other | lineage4.9 | None | SRR6045743 | Other | lineage3 | None | SRR6153150 | Other | lineage3.1.1 | None | SRR19241806 | Sensitive | lineage4.1.2.1 | None | SRR11342695 | MDR-TB | lineage4.8 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR1181256 | Other | lineage4.9 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR7069249 | Sensitive | lineage3 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR6045565 | Other | lineage4.6.2.2 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR867544 | Other | lineage4.9 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | SRR7069314 | Other | lineage3 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | ERR10796591 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18213736 | Other | lineage3 | None | SRR10379910 | MDR-TB | lineage4.3.3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR5007165 | Other | lineage3 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR7069931 | Other | lineage4.2.2.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR176817 | Sensitive | lineage4.3.4.2.1 | mw | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR1173719 | Other | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR751345 | Other | lineage5.1.1 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6045957 | Other | lineage4.9 | None | SRR7070461 | Other | lineage3 | None | SRR7070609 | Other | lineage4.2.2.2 | None | ERR2600609 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | SRR7070320 | Other | lineage4.8 | None | SRR7131068 | Other | lineage4.8 | None | ERR171135 | Other | lineage2.2.1 | za | ERR867575 | Other | lineage4.9 | None | ERR228180 | Sensitive | lineage3 | None | SRR7070369 | Other | lineage1.2.2.2 | None | ERR10796618 | Other | lineage4.3.4.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR4769506 | Sensitive | lineage4.9 | None | SRR6044784 | Other | lineage3 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR4811708 | HR-TB | lineage4 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR6045056 | Other | lineage2.2.1 | gb | SRR6045516 | Other | lineage3.1.1 | None | SRR6046020 | Other | lineage3 | None | ERR5087846 | Other | La1.8.1 | None | ERR4812328 | Other | lineage4.3.3 | pe | SRR13888750 | Other | La2 | None | SRR21469201 | Other | La1.7.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4830887 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR6044841 | Other | lineage4.9 | None | SRR6046246 | Other | lineage3 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR10796595 | Other | lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR7070329 | Other | lineage3 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7069137 | Other | lineage4.8 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR7069957 | Sensitive | lineage4.1.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6045928 | Other | lineage4.9 | None | ERR10796583 | Other | lineage2.2.1 | None | SRR7069319 | Other | lineage4.5 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | SRR7069858 | Other | lineage1.2.1.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR18002961 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR10796553 | Other | lineage4.9 | None | ERR8975044 | Other | lineage4.1.1.2 | None | DRR188816 | Sensitive | lineage4.2.2 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR21469202 | Other | La1.7.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SRR7068863 | Sensitive | lineage4.6.2.2 | None | SRR1792011 | Other | La1.8.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | ERR4769555 | Sensitive | La1.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR6046291 | Other | lineage3 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | ERR10796635 | Other | lineage4.8 | None | SRR13423546 | Other | lineage4.4.2 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR228175 | Sensitive | lineage3 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR5007170 | Other | lineage4.9 | None | ERR038289 | Other | lineage4.3.3 | None | ERR10796599 | Other | lineage4.8 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR18002888 | RR-TB | lineage2.2.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | ERR4817915 | Other | lineage4.9 | None | SRR7069097 | Other | lineage3.1.2.1 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR6044936 | Other | lineage4.6 | None | SRR7068875 | Other | lineage3.1.2.2 | None | SRR6046275 | Other | lineage3.1.1;lineage4 | None | ERR10796562 | Other | lineage4.3.4.1 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR7070223 | HR-TB | lineage3 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR11342684 | HR-TB | lineage4.4.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1792025 | Other | La1.8.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6046815 | Other | lineage3 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR6045485 | Other | lineage4.9 | None | SRR21469200 | Other | La1.7.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | ERR4586795 | Other | La1.8.1 | None | SRR11342669 | Other | lineage4.8 | None | SRR7069954 | Other | lineage1.2.2.2 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675552 | Other | lineage4.9 | None | SRR7068873 | Other | lineage4.8 | None | SRR7069518 | Other | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR19304115 | Other | lineage4.1.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR19304094 | Other | lineage6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR5087596 | Other | La1.8.1 | None | SRR7131296 | Other | lineage4.3.3 | None | ERR10796615 | Other | lineage4.3.3;lineage4.9 | None | SRR7070293 | Other | lineage4.8 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR7070230 | Other | lineage2.2.1.2 | None | SRR7070479 | Other | lineage4.1.2 | None | SRR11349208 | MDR-TB | lineage2.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | SRR7069669 | Other | lineage3.1.1 | None | SRR7069030 | Other | lineage3 | None | ERR9117788 | Other | lineage3 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR1792024 | Other | La1.8.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213726 | Other | lineage3 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | SRR7070571 | Sensitive | lineage3 | None | SRR7069648 | Other | lineage4.6.2.2 | None | DRR185000 | Other | lineage1.1.1.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR14801720 | Other | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR7068998 | Sensitive | lineage3.1.3 | None | SRR9971144 | RR-TB | lineage2.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR4033549 | Other | lineage2.2.2 | None | SRR11349153 | RR-TB | lineage4.1.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR22048484 | Sensitive | lineage4.8 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR9971032 | RR-TB | lineage2.2.1 | None | ERR2509886 | Other | lineage3 | None | ERR10796598 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR7070515 | Other | lineage1.1.3.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR4830892 | Pre-XDR-TB | lineage2.2.1 | None | SRR7068927 | Other | lineage1.2.2.2 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR11342646 | HR-TB | lineage3 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR5818672 | Other | lineage1.2.2.2 | None | ERR9811805 | MDR-TB | lineage4.8 | None | ERR4820503 | Sensitive | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None |
---|