TB-Profiler result

Run: SRR5007170
Summary

Run ID: SRR5007170

Sample name:

Date: 04-04-2023 07:51:32

Number of reads: 30217

Percentage reads mapped: 2.52

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.89 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.5 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.73 streptomycin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.27 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 760313 c.507G>C synonymous_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 0.67
rpoB 761030 c.1224G>C synonymous_variant 0.75
rpoB 761037 c.1231T>C synonymous_variant 0.83
rpoB 761051 c.1245G>C synonymous_variant 0.86
rpoB 761054 c.1248G>C synonymous_variant 0.86
rpoB 761057 c.1251G>C synonymous_variant 0.86
rpoB 761060 c.1254C>G synonymous_variant 0.86
rpoB 761084 c.1278C>A synonymous_variant 0.86
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.86
rpoB 761096 c.1290G>C synonymous_variant 0.86
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.86
rpoB 761102 c.1296A>G synonymous_variant 0.88
rpoB 761123 c.1317G>C synonymous_variant 0.22
rpoB 761126 c.1320G>C synonymous_variant 0.44
rpoB 761132 c.1326G>C synonymous_variant 0.89
rpoB 761133 c.1327T>C synonymous_variant 0.89
rpoB 761138 c.1332C>T synonymous_variant 0.22
rpoB 761147 c.1341C>T synonymous_variant 0.33
rpoB 761150 c.1344A>C synonymous_variant 0.89
rpoB 761159 c.1353G>C synonymous_variant 0.89
rpoB 761165 c.1359G>C synonymous_variant 0.89
rpoB 761174 c.1368T>C synonymous_variant 0.67
rpoB 761180 c.1374A>C synonymous_variant 0.75
rpoB 761186 p.Glu460Asp missense_variant 0.6
rpoB 761189 c.1383T>C synonymous_variant 0.5
rpoB 761192 c.1386C>G synonymous_variant 0.5
rpoB 761195 c.1389G>C synonymous_variant 0.5
rpoB 761201 c.1395G>A synonymous_variant 0.5
rpoB 761207 c.1401C>A synonymous_variant 0.5
rpoB 761213 c.1407G>C synonymous_variant 0.5
rpoB 761219 c.1413G>C synonymous_variant 0.5
rpoB 761234 c.1428G>C synonymous_variant 0.5
rpoB 762080 c.2274G>C synonymous_variant 1.0
rpoB 762085 p.Ala760Glu missense_variant 1.0
rpoB 762089 c.2283G>A synonymous_variant 1.0
rpoB 762110 c.2304G>C synonymous_variant 1.0
rpoB 762114 p.Ile770Val missense_variant 1.0
rpoB 762122 p.Asp772Glu missense_variant 1.0
rpoB 762125 c.2319G>A synonymous_variant 1.0
rpoB 762126 p.Val774Ser missense_variant 1.0
rpoB 762134 c.2328C>T synonymous_variant 1.0
rpoB 762143 c.2337T>C synonymous_variant 1.0
rpoB 762149 c.2343G>C synonymous_variant 1.0
rpoB 762156 p.Val784Ile missense_variant 1.0
rpoB 762167 c.2361T>C synonymous_variant 1.0
rpoB 762176 c.2370T>C synonymous_variant 1.0
rpoB 762177 p.Arg791Thr missense_variant 1.0
rpoB 762181 p.Asp792Ala missense_variant 1.0
rpoB 762185 c.2379G>C synonymous_variant 1.0
rpoB 762194 c.2388G>C synonymous_variant 1.0
rpoB 762200 c.2394C>T synonymous_variant 1.0
rpoB 762218 c.2412T>C synonymous_variant 0.67
rpoB 762233 c.2427G>C synonymous_variant 0.75
rpoB 762234 p.Pro810Ser missense_variant 0.8
rpoB 762245 c.2439G>C synonymous_variant 0.8
rpoB 762254 c.2448T>C synonymous_variant 0.8
rpoC 762842 c.-528G>C upstream_gene_variant 0.5
rpoC 762854 c.-516G>C upstream_gene_variant 0.43
rpoB 762855 p.Val1017Ile missense_variant 0.86
rpoB 762858 p.Thr1018Ser missense_variant 1.0
rpoC 762863 c.-507T>G upstream_gene_variant 1.0
rpoB 762871 p.Met1022Thr missense_variant 0.43
rpoB 762878 p.Ile1024Met missense_variant 0.5
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762887 c.-483G>C upstream_gene_variant 1.0
rpoC 762896 c.-474G>C upstream_gene_variant 0.57
rpoC 762899 c.-471G>C upstream_gene_variant 0.43
rpoC 762926 c.-444C>G upstream_gene_variant 0.9
rpoC 762929 c.-441G>C upstream_gene_variant 1.0
rpoC 762938 c.-432G>C upstream_gene_variant 0.4
rpoC 762944 c.-426C>T upstream_gene_variant 0.2
rpoC 762947 c.-423C>G upstream_gene_variant 0.6
rpoC 762962 c.-408C>T upstream_gene_variant 0.27
rpoC 762971 c.-399G>C upstream_gene_variant 0.9
rpoC 762980 c.-390T>C upstream_gene_variant 0.78
rpoC 762983 c.-387C>T upstream_gene_variant 0.22
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>C upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoB 763014 p.Met1070Leu missense_variant 1.0
rpoB 763017 p.Gln1071Glu missense_variant 1.0
rpoC 763022 c.-348C>A upstream_gene_variant 0.67
rpoC 763028 c.-342T>C upstream_gene_variant 0.75
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 1.0
rpoC 763043 c.-327G>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoB 763077 p.Val1091Thr missense_variant 1.0
rpoC 763103 c.-267G>C upstream_gene_variant 1.0
rpoC 763468 c.99G>C synonymous_variant 0.4
rpoC 763483 c.114G>C synonymous_variant 0.29
rpoC 763486 c.117T>C synonymous_variant 0.43
rpoC 763492 c.123G>C synonymous_variant 0.5
rpoC 763528 c.159G>C synonymous_variant 0.6
rpoC 763531 c.162G>C synonymous_variant 0.6
rpoC 763534 c.165T>C synonymous_variant 0.6
rpoC 763537 c.168C>G synonymous_variant 0.4
rpoC 763546 c.177A>G synonymous_variant 0.6
rpoC 763550 p.Tyr61Ala missense_variant 0.6
rpoC 763570 c.201G>C synonymous_variant 0.67
rpoC 763578 p.Phe70Tyr missense_variant 0.67
rpoC 763589 p.Ile74Val missense_variant 0.33
rpoC 763615 c.246G>C synonymous_variant 0.67
rpoC 763618 c.249C>T synonymous_variant 0.67
rpoC 763622 p.Ala85Ser missense_variant 0.5
rpoC 763633 c.264T>C synonymous_variant 0.6
rpoC 763642 c.273G>C synonymous_variant 0.86
rpoC 763648 c.279C>T synonymous_variant 0.38
rpoC 763655 p.Glu96Asn missense_variant 0.22
rpoC 763660 c.291T>G synonymous_variant 0.71
rpoC 763666 c.297G>C synonymous_variant 0.67
rpoC 763669 c.300C>G synonymous_variant 0.2
rpoC 763675 c.306C>G synonymous_variant 0.67
rpoC 763699 c.330G>T synonymous_variant 0.67
rpoC 763708 c.339G>C synonymous_variant 0.78
rpoC 763714 c.345G>C synonymous_variant 0.75
rpoC 763717 c.348T>C synonymous_variant 0.75
rpoC 763718 p.Leu117Val missense_variant 0.5
rpoC 763723 c.354G>C synonymous_variant 0.75
rpoC 763724 p.Asp119Asn missense_variant 0.75
rpoC 763729 c.360G>C synonymous_variant 0.62
rpoC 763732 c.363C>G synonymous_variant 0.62
rpoC 763735 c.366G>C synonymous_variant 0.75
rpoC 763744 c.375G>C synonymous_variant 0.57
rpoC 763751 p.Ile128Val missense_variant 0.75
rpoC 763765 c.396T>C synonymous_variant 0.43
rpoC 763772 p.Val135Met missense_variant 0.86
rpoC 764347 c.978G>C synonymous_variant 1.0
rpoC 764353 c.984G>T synonymous_variant 1.0
rpoC 764359 c.990C>G synonymous_variant 1.0
rpoC 764371 c.1002G>T synonymous_variant 1.0
rpoC 764377 c.1008C>G synonymous_variant 1.0
rpoC 764380 c.1011G>C synonymous_variant 1.0
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 1.0
rpoC 764404 c.1035C>T synonymous_variant 0.67
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764410 c.1041G>C synonymous_variant 0.67
rpoC 764424 p.Asn352Thr missense_variant 1.0
rpoC 764428 c.1059G>A synonymous_variant 1.0
rpoC 764431 c.1062G>C synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066A>C synonymous_variant 1.0
rpoC 764441 p.Ile358Leu missense_variant 1.0
rpoC 764446 p.Asp359Glu missense_variant 1.0
rpoC 764452 c.1083T>C synonymous_variant 0.5
rpoC 764455 c.1086G>C synonymous_variant 0.75
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764485 c.1116G>C synonymous_variant 1.0
rpoC 764491 c.1122G>T synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 0.6
rpoC 764503 c.1134G>T synonymous_variant 1.0
rpoC 764509 c.1140G>C synonymous_variant 1.0
rpoC 764512 c.1143G>C synonymous_variant 0.8
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764524 c.1155C>T synonymous_variant 0.6
rpoC 764530 c.1161C>T synonymous_variant 0.6
rpoC 764536 c.1167G>C synonymous_variant 1.0
rpoC 764543 p.Thr392Ala missense_variant 0.83
rpoC 764548 c.1179G>T synonymous_variant 1.0
rpoC 764566 c.1197C>G synonymous_variant 0.71
rpoC 764573 p.Leu402Ile missense_variant 0.86
rpoC 764578 c.1209C>G synonymous_variant 0.86
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764582 p.Leu405Met missense_variant 1.0
rpoC 764602 c.1233C>T synonymous_variant 0.82
rpoC 764605 c.1236G>T synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764623 c.1254C>G synonymous_variant 0.33
rpoC 764632 c.1263T>A synonymous_variant 0.57
rpoC 764635 c.1266C>G synonymous_variant 0.38
rpoC 764647 c.1278C>T synonymous_variant 0.71
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764653 c.1284G>C synonymous_variant 0.86
rpoC 764656 c.1287C>T synonymous_variant 0.83
rpoC 764662 c.1293G>C synonymous_variant 1.0
rpoC 764671 c.1302G>C synonymous_variant 0.29
rpoC 764677 c.1308C>G synonymous_variant 0.6
rpoC 764678 p.Lys437Gln missense_variant 0.67
rpoC 764683 c.1314G>C synonymous_variant 0.83
rpoC 764692 c.1323C>T synonymous_variant 0.83
rpoC 764703 p.Lys445Ser missense_variant 0.33
rpoC 764705 p.Leu446Ala missense_variant 0.67
rpoC 764713 c.1344G>C synonymous_variant 1.0
rpoC 764731 c.1362G>C synonymous_variant 1.0
rpoC 764737 c.1368G>C synonymous_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.82
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.91
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.82
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.29
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.69
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.44
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.19
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.38
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.83
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.5
rrs 1472263 n.418C>T non_coding_transcript_exon_variant 0.33
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.67
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.57
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.41
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.53
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.53
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.63
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.67
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.64
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.64
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.33
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.65
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.68
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.55
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.38
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.29
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.71
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.7
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.4
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.27
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.72
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.28
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.7
rrs 1472687 n.842_843insC non_coding_transcript_exon_variant 0.89
rrs 1472687 n.843dupT non_coding_transcript_exon_variant 0.93
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.91
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.23
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.72
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.74
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.26
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.74
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.69
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.68
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.86
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.5
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.71
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.5
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.43
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.43
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.4
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.94
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.61
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.63
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.88
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.95
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.39
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.95
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.83
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.88
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.24
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.53
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.33
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.95
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.82
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.23
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.68
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.48
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.39
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.78
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.65
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.82
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.89
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.79
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.83
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.28
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 1.0
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.6
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.57
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 1.0
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.23
rrs 1473314 n.1469A>G non_coding_transcript_exon_variant 0.2
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.67
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.5
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.5
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.67
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.67
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.67
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.5
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.57
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.29
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.71
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.71
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.25
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.3
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.18
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.3
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 0.22
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.71
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.33
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.91
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.62
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.61
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.56
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.63
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.3
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.65
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.76
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.24
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.65
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.75
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.83
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.91
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.83
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 0.83
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.8
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.8
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.83
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.57
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.3
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.83
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.3
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.43
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.22
rrl 1475757 n.2101_2104delACCC non_coding_transcript_exon_variant 0.75
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.3
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.3
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.6
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.95
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.63
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.56
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.63
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.96
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.92
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.62
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.95
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.69
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.96
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.85
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.96
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.95
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.84
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.86
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.89
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.25
rrl 1475992 n.2335T>G non_coding_transcript_exon_variant 0.29
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.25
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 0.5
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.5
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.83
rrl 1475999 n.2342G>A non_coding_transcript_exon_variant 0.25
rrl 1476000 n.2343G>A non_coding_transcript_exon_variant 0.25
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.75
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.67
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.67
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.67
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.8
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.86
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.67
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.71
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.71
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.62
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.83
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.38
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.62
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.62
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.62
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.5
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.62
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.22
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.78
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.65
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.75
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.74
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.88
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.71
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.91
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.86
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.84
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.97
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.86
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.84
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.94
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.83
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.8
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.81
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.84
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.82
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.77
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.79
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.23
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.76
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.76
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.2
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.69
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.97
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.94
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.56
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.96
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.56
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.25
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.8
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.46
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.54
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.77
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.85
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.77
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.92
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.92
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.46
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.31
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.58
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.4
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.67
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.67
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.67
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476613 n.2956G>A non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
rpsA 1833646 c.105T>C synonymous_variant 0.5
rpsA 1833661 c.120A>G synonymous_variant 0.75
rpsA 1833667 c.126C>T synonymous_variant 0.75
rpsA 1833668 p.Ile43Val missense_variant 0.75
rpsA 1833676 c.135A>G synonymous_variant 0.75
rpsA 1833679 c.138G>C synonymous_variant 0.75
rpsA 1833685 c.144G>C synonymous_variant 0.67
rpsA 1833688 c.147C>T synonymous_variant 0.5
rpsA 1833694 c.153G>C synonymous_variant 0.75
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833732 p.Pro64Leu missense_variant 1.0
rpsA 1833736 c.195C>T synonymous_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833770 p.Asn77Asp missense_variant 1.0
rpsA 1833928 c.387G>C synonymous_variant 0.67
rpsA 1833943 c.402C>T synonymous_variant 0.33
rpsA 1833949 c.408T>C synonymous_variant 0.5
rpsA 1833952 c.411C>T synonymous_variant 0.33
rpsA 1833955 c.414G>C synonymous_variant 0.33
rpsA 1833970 c.429G>T synonymous_variant 0.8
rpsA 1833976 c.435C>T synonymous_variant 0.57
rpsA 1833979 c.438T>C synonymous_variant 0.83
rpsA 1833985 c.444G>A synonymous_variant 0.33
rpsA 1833991 c.450C>T synonymous_variant 0.6
rpsA 1833994 c.453G>C synonymous_variant 0.83
rpsA 1833997 c.456G>C synonymous_variant 0.5
rpsA 1834000 c.459G>T synonymous_variant 0.75
rpsA 1834003 c.462G>A synonymous_variant 0.33
rpsA 1834009 c.468C>T synonymous_variant 0.67
rpsA 1834012 c.471G>C synonymous_variant 0.83
rpsA 1834015 c.474G>C synonymous_variant 0.75
rpsA 1834024 c.483G>C synonymous_variant 0.67
rpsA 1834025 p.Gln162Ala missense_variant 0.4
rpsA 1834034 p.Ile165Val missense_variant 0.4
rpsA 1834039 c.498C>T synonymous_variant 0.6
rpsA 1834040 p.Lys167Arg missense_variant 1.0
rpsA 1834046 p.Ile169Leu missense_variant 0.4
rpsA 1834051 c.510G>A synonymous_variant 0.6
rpsA 1834054 c.513C>G synonymous_variant 0.5
rpsA 1834069 c.528G>C synonymous_variant 0.4
rpsA 1834183 c.642T>C synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834228 c.687C>T synonymous_variant 0.5
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834246 c.705G>T synonymous_variant 0.67
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834258 c.717G>A synonymous_variant 0.67
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 1.0
rpsA 1834298 p.Gln253Glu missense_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834307 p.Asp256Gln missense_variant 1.0
rpsA 1834312 c.771G>A synonymous_variant 1.0
rpsA 1834327 c.786G>T synonymous_variant 0.88
rpsA 1834345 c.804C>T synonymous_variant 0.8
rpsA 1834348 c.807T>C synonymous_variant 0.75
rpsA 1834354 c.813G>C synonymous_variant 0.75
rpsA 1834357 c.816T>C synonymous_variant 0.75
rpsA 1834360 c.819G>C synonymous_variant 0.75
rpsA 1834361 c.820T>C synonymous_variant 0.75
rpsA 1834366 c.825A>G synonymous_variant 0.75
rpsA 1834375 c.834G>C synonymous_variant 0.8
rpsA 1834378 c.837T>C synonymous_variant 0.8
rpsA 1834387 c.846C>T synonymous_variant 0.67
rpsA 1834395 p.Arg285Gln missense_variant 0.75
rpsA 1834397 p.His286Ala missense_variant 0.75
rpsA 1834411 c.870T>C synonymous_variant 0.6
rpsA 1834417 c.876G>C synonymous_variant 0.6
rpsA 1834423 c.882G>C synonymous_variant 0.6
rpsA 1834427 p.Ile296Val missense_variant 0.6
rpsA 1834435 c.894G>C synonymous_variant 0.6
rpsA 1834451 c.910T>C synonymous_variant 0.6
rpsA 1834459 c.918G>C synonymous_variant 0.6
rpsA 1834465 c.924T>C synonymous_variant 0.5
rpsA 1834468 c.927A>G synonymous_variant 0.67
rpsA 1834474 c.933C>G synonymous_variant 0.67
rpsA 1834486 p.Glu315Asp missense_variant 0.67
rpsA 1834489 c.948T>C synonymous_variant 0.5
rpsA 1834523 p.Glu328Gln missense_variant 0.6
rpsA 1834528 c.987T>C synonymous_variant 0.4
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0