EBG00000313325 - n.842_843insC
Drug resistance types
3 Sensitive
16 RR-TB
28 HR-TB
27 MDR-TB
11 Pre-XDR-TB
4 XDR-TB
247 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4.1.1.1 | 4 |
| lineage4.1.1 | 5 |
| lineage4.4.1.1 | 9 |
| lineage4.3.3 | 20 |
| lineage4.1.1.3 | 7 |
| lineage2.2.1 | 42 |
| lineage2.2.2 | 1 |
| 7 | |
| lineage4.3.4 | 1 |
| lineage1.1.3.1 | 2 |
| lineage4.9 | 10 |
| lineage2.2.1.1 | 5 |
| lineage4.7 | 8 |
| lineage4.8 | 24 |
| La1.6 | 2 |
| lineage4 | 4 |
| lineage4.3.4.2 | 5 |
| lineage1.1.2 | 6 |
| lineage4.6.2.2 | 8 |
| lineage1.2.1.1 | 2 |
| lineage3 | 43 |
| lineage4.3.4.1 | 4 |
| lineage3.1 | 2 |
| lineage2.2.1.2 | 2 |
| lineage4.4.1 | 1 |
| lineage4.2.2.2 | 4 |
| lineage4.1.2.1 | 33 |
| lineage3.1.1 | 4 |
| lineage2.2 | 1 |
| lineage1.1.3 | 3 |
| lineage4.3.1 | 1 |
| lineage6.2.3 | 1 |
| lineage3.1.2.1 | 2 |
| lineage1.2.2.2 | 4 |
| lineage4.1.2 | 6 |
| lineage4.5 | 3 |
| lineage3.1.2 | 6 |
| lineage4.1.1.3.1 | 3 |
| lineage1 | 2 |
| lineage4.8.1 | 4 |
| lineage4.3.2.1 | 4 |
| lineage4.2.1 | 2 |
| lineage1.2.1.2.1 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.2.2 | 2 |
| lineage3.1.3 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.1.1 | 6 |
| lineage4.6 | 1 |
| lineage5 | 1 |
| lineage4.8.2 | 2 |
| lineage4.2.1.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage6.1.3 | 6 |
| La1.7.1 | 1 |
| lineage4.9;lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 336 |
Geographic prevalence
Country level data for this variant is available for 84 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11349137 | RR-TB | lineage4.4.1.1.1 | None | SRR11342643 | MDR-TB | lineage4.1.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR11349138 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349152 | XDR-TB | lineage4.3.3 | None | SRR11349140 | MDR-TB | lineage4.1.1.3 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | SRR11349159 | MDR-TB | lineage2.2.2 | None | SRR11349160 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349173 | RR-TB | lineage2.2.1 | None | SRR11349185 | Other | lineage4.4.1.1.1 | None | SRR1140942 | Other | None | SRR11349208 | MDR-TB | lineage2.2.1 | None | SRR1173113 | RR-TB | lineage4.3.4 | None | SRR1172816 | MDR-TB | lineage4.3.3 | None | SRR12006586 | Other | lineage1.1.3.1 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR1175304 | MDR-TB | lineage4.3.3 | None | SRR18002929 | HR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002972 | Other | lineage2.2.1 | None | SRR18002934 | Other | lineage2.2.1 | None | SRR18002960 | XDR-TB | lineage2.2.1 | None | SRR18003052 | Other | lineage2.2.1.1 | None | SRR18003011 | Other | lineage2.2.1 | None | SRR19303964 | Other | lineage4.7 | None | SRR22048392 | Other | lineage4.8 | None | SRR21595927 | HR-TB | lineage2.2.1 | None | ERR4814355 | Other | La1.6 | gb | ERR4815130 | Other | lineage4.8 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815197 | Other | lineage4 | None | ERR4815208 | Other | lineage2.2.1.1 | gb | ERR4815641 | Other | lineage4.3.4.2 | gb | ERR4815299 | Other | lineage4.8 | gb | SRR3675491 | Other | lineage4.7 | None | ERR4815627 | Other | lineage4.1.1.3 | gb | SRR3675485 | Other | lineage2.2.1 | None | ERR4815795 | Other | lineage1.1.2 | None | ERR4814442 | Other | lineage4.4.1.1 | None | ERR4814399 | Other | lineage4.6.2.2 | gb | ERR4815784 | Other | lineage2.2.1 | gb | SRR3675496 | Other | lineage4.1.1.3 | gb | ERR4814572 | Other | lineage4.3.3 | None | ERR4815452 | Other | lineage4.3.3 | None | SRR3675220 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675213 | Other | lineage4 | None | ERR4814986 | Other | lineage4.3.4.2 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR4814700 | Other | lineage4.3.3 | None | ERR4814804 | Other | lineage2.2.1 | None | SRR3675261 | Other | lineage1.2.1.1 | None | ERR4814874 | MDR-TB | lineage1.1.2 | None | ERR4815738 | Other | lineage3 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4814912 | HR-TB | lineage4.3.4.1 | None | ERR4814932 | Other | lineage4.1.1 | None | ERR4814954 | Other | lineage3.1 | gb | ERR4815551 | Other | lineage2.2.1 | None | SRR3675225 | Other | lineage2.2.1.2 | None | ERR4815488 | HR-TB | lineage4.4.1 | None | ERR4814801 | Other | lineage4.8 | gb | SRR3675251 | Other | lineage4.3.3 | None | SRR3675256 | Other | lineage4.7 | None | ERR4815101 | Other | lineage3 | gb | ERR4815040 | Other | lineage4.2.2.2 | None | ERR4815080 | Other | lineage4.1.2.1 | None | ERR4815089 | HR-TB | lineage2.2.1 | gb | ERR4817464 | Other | lineage3.1.1 | None | ERR4815901 | Other | lineage2.2 | None | ERR4815917 | Other | lineage2.2.1 | gb | SRR3675538 | Other | lineage4.8 | None | ERR4815956 | Other | lineage1.1.2 | None | SRR3675512 | Other | lineage2.2.1 | None | ERR4816971 | HR-TB | lineage4.3.4.1 | None | ERR4816089 | Other | lineage4.2.2.2 | gb | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816093 | Other | lineage1.1.3 | None | ERR4817354 | Other | lineage3 | gb | ERR4816101 | Other | lineage4.1.2.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027293 | Other | lineage4.3.4.2 | None | ERR2027285 | MDR-TB | lineage4.6.2.2 | None | ERR2027277 | Other | lineage4.8 | None | SRR3675562 | Other | lineage4.3.1 | None | ERR4816403 | Other | lineage6.2.3 | None | ERR4817060 | RR-TB | None | ERR4816300 | Other | lineage4.1.2.1 | None | ERR4816350 | Other | lineage4.9 | gb | ERR4816258 | Other | lineage2.2.1.1 | gb | ERR4816476 | Other | lineage3.1.2.1 | None | ERR4817086 | Other | lineage1.2.2.2 | gb | ERR4817874 | Other | lineage3 | None | ERR4816510 | Other | lineage4.1.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4816677 | Other | lineage4.5 | None | ERR4817202 | MDR-TB | lineage3.1.2 | gb | ERR4816681 | Other | lineage4.1.2.1 | gb | ERR4816876 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR4819062 | Other | lineage3 | gb | ERR2513378 | Other | lineage3 | None | ERR4818988 | Other | lineage1 | None | ERR2512986 | Other | lineage3 | None | ERR4817853 | Other | lineage4.8.1 | None | ERR4817169 | Other | lineage4.7 | gb | ERR4817170 | Other | lineage4.1.2.1 | gb | ERR4816649 | Other | lineage3 | None | ERR4816718 | Other | lineage4.1.2.1 | gb | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4816890 | HR-TB | lineage4.6.2.2 | None | ERR2513392 | Other | lineage4.3.2.1 | gb | ERR4819002 | HR-TB | lineage4.8 | None | ERR2513054 | Other | lineage4.2.2.2 | None | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4817958 | Other | lineage4.2.1 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR4818084 | Other | lineage3.1.1 | gb | ERR4818752 | Other | lineage3 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818776 | Other | lineage2.2.1 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | ERR2513440 | Other | lineage4.1.1.3 | None | ERR4818801 | Other | lineage4.7 | gb | ERR4818964 | Other | lineage1.2.1.2.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR2512494 | Other | lineage4.3.3 | gb | ERR4818187 | Other | lineage4.6.1.1 | gb | ERR2513223 | Other | lineage4.1.2.1 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR4818952 | Other | lineage3 | None | ERR2512812 | HR-TB | lineage3 | gb | SRR5007182 | MDR-TB | lineage3 | None | ERR4818257 | Other | lineage4.1.2 | gb | ERR4818265 | Other | lineage4.1.2.1 | None | ERR4818874 | Other | lineage4.1.2.1 | gb | ERR2512630 | Other | lineage4.8 | gb | ERR4818471 | Other | lineage2.2.1 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR4818556 | Other | lineage3 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4817561 | Other | lineage4.7 | gb | SRR5007203 | Other | lineage2.2.1 | None | ERR4819082 | Other | lineage1.1.2 | gb | ERR2513364 | Sensitive | lineage4.1.2.1 | None | ERR2513717 | Other | lineage2.2.1 | None | ERR4819125 | Other | lineage2.2.1 | gb | ERR4819140 | Other | lineage4.1.2.1 | None | ERR4820231 | HR-TB | lineage4.6.1.2 | gb | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR2513699 | Other | lineage4.1.2 | gb | ERR2513700 | Other | lineage4.4.1.1 | gb | ERR4819191 | Other | lineage4.6.2.2 | None | ERR4820717 | Other | lineage1.1.3 | None | ERR4820247 | HR-TB | lineage4.9 | None | ERR4819183 | Other | lineage3 | None | ERR4820713 | HR-TB | lineage4.8 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4820290 | Other | lineage3 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR2513794 | Other | lineage4.8 | gb | ERR2513830 | RR-TB | lineage4.8 | None | ERR4819324 | Other | lineage4.8 | gb | ERR4820324 | Other | lineage4 | None | ERR4819347 | Other | lineage4.1.2.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR4819379 | Sensitive | lineage4.1.2.1 | gb | ERR4819424 | Other | lineage4.8 | gb | ERR4820719 | Other | lineage1.2.2.2 | None | ERR4819423 | Other | lineage4.6.2.2 | None | ERR4820338 | Other | lineage4.2.2.2 | None | ERR2515641 | Other | lineage2.2.1 | za | ERR4819456 | Other | lineage4.8 | None | ERR4820348 | Other | lineage4.1.2.1 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR2514315 | Other | lineage3 | gb | ERR4819821 | Other | lineage4.8 | None | ERR4820748 | Other | lineage3 | None | ERR4819555 | Other | lineage4.8 | None | ERR4819576 | Other | lineage4.2.2 | gb | ERR4820761 | Other | lineage4.3.4.2 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820771 | Other | lineage4.8 | None | ERR4819727 | Other | lineage1.1.3.1 | None | ERR4820471 | Other | lineage3 | gb | ERR2514550 | MDR-TB | lineage3 | gb | ERR4820478 | Other | lineage3.1.3 | None | ERR2514565 | Other | lineage3.1.2.1 | gb | ERR4819782 | Other | lineage1.2.1.2.1 | gb | ERR2514609 | HR-TB | lineage3 | gb | ERR2514608 | Other | lineage1.1.3 | gb | ERR2514668 | Other | lineage4.8.1 | gb | ERR2514673 | Other | lineage4.1.2.1 | gb | ERR4820498 | HR-TB | lineage4.8 | gb | ERR4819805 | Other | lineage4.1.2.1 | gb | ERR4819830 | Other | lineage2.2.1 | None | ERR4819867 | Other | lineage1.1.3.2 | None | ERR2514702 | Other | lineage4.1.2.1 | gb | ERR2514838 | Other | lineage4.8 | gb | ERR2514834 | Other | lineage4.7 | None | ERR2514854 | Other | lineage4.3.3 | None | ERR4820827 | Other | lineage4.1.2 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR2514968 | Other | lineage4.3.3 | None | ERR4819955 | Other | lineage3 | None | ERR2515062 | Other | lineage2.2.1.2 | gb | ERR4820033 | Other | lineage3 | gb | ERR4820833 | HR-TB | None | ERR4820622 | Other | lineage4.3.4.2 | None | ERR4820060 | Other | lineage4.3.3 | None | ERR4820132 | Other | lineage4.1.2 | None | SRR6045420 | Other | lineage4.1.2.1 | gb | ERR4820187 | Other | lineage4.3.3 | None | ERR4820941 | HR-TB | lineage3 | gb | ERR4820967 | HR-TB | None | ERR4820690 | Other | lineage4.1.1 | gb | ERR4820188 | Other | lineage3 | gb | ERR4821085 | Other | lineage2.2.1 | None | ERR4821054 | Other | lineage3 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6045485 | Other | lineage4.9 | None | ERR4821849 | Other | lineage4.5 | gb | ERR4821222 | Other | lineage4.3.2.1 | None | SRR6046090 | HR-TB | lineage4.6 | gb | ERR4822104 | RR-TB | lineage3 | None | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821995 | Other | lineage2.2.1 | gb | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821409 | Other | lineage4.8 | None | ERR4821958 | Other | lineage4.3.3 | gb | ERR4821310 | Other | lineage5 | None | ERR4822200 | Other | lineage4.3.4.1 | gb | ERR4821538 | Other | lineage3 | None | ERR4821543 | Other | lineage4.3.2.1 | gb | ERR4821561 | HR-TB | lineage4.6.2.2 | None | ERR4821641 | Other | lineage3 | gb | ERR4821584 | Other | lineage4.8.2 | None | SRR6046173 | Other | lineage3 | None | ERR4821650 | Other | lineage4.1.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045618 | Other | lineage3.1.2 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045768 | Other | lineage4.1.2.1 | gb | SRR6045833 | Other | lineage3.1 | gb | SRR6044817 | Other | lineage3 | None | SRR6044857 | Other | lineage4.8.1 | gb | SRR6044888 | Other | lineage4.1.1.3.1 | None | SRR6044936 | Other | lineage4 | None | SRR6044946 | Other | lineage4.1.2.1 | gb | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821773 | Other | La1.6 | None | SRR6045743 | Other | lineage3 | None | SRR6045744 | Other | lineage3.1.2 | None | SRR5818610 | Other | lineage3 | None | SRR5818666 | Other | lineage3 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6045846 | Other | lineage4.4.1.1 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044904 | Other | lineage3 | None | SRR6044916 | Other | lineage4.1.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045045 | Other | lineage2.2.1 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6045064 | Other | lineage4.3.1.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6045110 | Other | lineage3 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR6046016 | Other | lineage4.3.1.1 | gb | SRR6046189 | Other | lineage4.8 | None | SRR6045288 | Other | lineage3 | gb | SRR6045289 | Other | None | SRR6046291 | Other | lineage3 | None | SRR6045325 | Other | lineage4.8.1 | gb | SRR6045335 | Other | lineage4.1.2.1 | None | SRR6045396 | Other | lineage4.3.1.1 | None | SRR6046246 | Other | lineage3 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6046586 | Other | lineage4.1.1.3 | gb | SRR6046384 | Other | lineage4.3.1.1 | gb | SRR6046634 | Other | lineage3 | gb | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046710 | Other | lineage4.8.2 | None | SRR6046815 | Other | lineage3 | None | SRR6046891 | Other | lineage4.7 | None | SRR7131251 | Other | lineage2.2.1 | None | SRR6153170 | Other | lineage4.9 | ca | SRR6398013 | Other | lineage4.1.2 | ca | SRR6855774 | Other | lineage2.2.1 | None | SRR9971256 | MDR-TB | lineage2.2.1 | None | SRR7131169 | Other | lineage4.1.2.1 | None | SRR7131183 | MDR-TB | lineage2.2.1 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR9971339 | MDR-TB | lineage4.3.3 | None | SRR9971372 | MDR-TB | lineage4.1.1 | None | SRR9970996 | XDR-TB | lineage4.4.1.1 | None | SRR9971052 | MDR-TB | lineage4.4.1.1 | None | SRR9971059 | RR-TB | lineage2.2.1 | None | ERR10219868 | Other | lineage4.1.2.1 | None | SRR8651617 | Pre-XDR-TB | lineage4.5 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR8651662 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971153 | Pre-XDR-TB | lineage4.3.3 | None | ERR4192398 | Other | lineage6.1.3 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR10796630 | HR-TB | None | ERR3588222 | Other | La1.7.1 | None | ERR4192417 | Other | lineage6.1.3 | None | ERR4192556 | Other | lineage6.1.3 | None | ERR4192419 | Other | lineage6.1.3 | None | ERR6197034 | Other | lineage4.9 | None | ERR4192554 | Other | lineage6.1.3 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR4192396 | Other | lineage6.1.3 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR9117714 | Other | lineage3.1.2 | None | ERR9027228 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117763 | HR-TB | lineage3 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | ERR9117780 | Other | lineage4.1.2.1 | None | SRR10315499 | MDR-TB | lineage2.2.1 | None | SRR10315658 | RR-TB | lineage4.3.2.1 | None | SRR10315587 | RR-TB | lineage4.1.1.3 | None | SRR10315630 | MDR-TB | lineage4.3.3 | None | SRR10315745 | Sensitive | lineage2.2.1.1 | None | SRR10315674 | MDR-TB | lineage2.2.1 | None |
|---|
