Run ID: ERR9117780
Sample name:
Date: 02-04-2023 09:31:11
Number of reads: 1558459
Percentage reads mapped: 95.25
Strain: lineage4.1.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.42 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6438 | p.Pro400Arg | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.27 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779003 | p.Asp5Gly | missense_variant | 1.0 |
mmpR5 | 779009 | p.Val7Gly | missense_variant | 0.29 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474801 | n.1144G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474802 | n.1145T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4248506 | p.Gly665Trp | missense_variant | 1.0 |
embB | 4249766 | p.Arg1085Cys | missense_variant | 0.1 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |