EBG00000313325 - n.837_838delTT


Drug resistance types
15 Sensitive 24 RR-TB 30 HR-TB 33 MDR-TB 12 Pre-XDR-TB 4 XDR-TB 304 Other
lineage Counts
lineage Count
lineage3.1.2.2 1
lineage3 37
lineage4.3.1.1 4
lineage4.9 10
lineage1.2.2.1 1
lineage4.7 10
lineage2.2.1 52
lineage3.1.2.1 1
7
lineage4.1.1.3.1 5
lineage1.1.2 13
lineage4.6.2.2 12
lineage4.8 31
lineage4.8.2 5
lineage3.1.1 2
lineage4.3.2 4
lineage1.1.1.1 1
lineage4.1.2.1 45
lineage4.3.2.1;lineage2.2.1 2
lineage4.2.2.2 10
lineage4.3.3 24
lineage4.4.1.1 11
lineage2.2.2 1
lineage4.5 5
lineage2.2 4
lineage4.4.1.1.1 6
lineage6.1.3 6
lineage4.1.1.3 9
lineage4.3.4.1 6
lineage4.4 2
lineage3.1.2 6
lineage4.3.4.2.1 5
lineage1.1.1 1
lineage1.2.2.2 5
lineage4.9;lineage2.2 1
lineage4.3.2.1 3
lineage2.2.1.1 3
lineage4.3.4 1
lineage1.1.3.1 6
lineage4.1.4 1
lineage1.2.1.2 2
La1.8.1 1
lineage1.2.1.2.1 5
lineage4.2.2 3
lineage3.1.3 1
lineage4 6
lineage4.4.2 1
lineage4.6 2
lineage4.8.1 2
lineage4.4.1 1
lineage2.2.1.2 1
lineage4.1 3
lineage4.2.1 5
lineage4.1.1 3
lineage4.2 2
lineage4.8;lineage4.2.1.1 1
lineage1.1.3 2
lineage4.3.4.2 3
lineage4.3.1 1
lineage4.6.3 1
lineage4.1.2 3
lineage6.2.3 1
lineage1 1
lineage6 2
lineage4.2.2.1 1
lineage4.1.1.2 1
lineage4;lineage3.1.2.1 1
lineage4.2.1.1 2
lineage1.1.3.2 1
La3 1
lineage5 1
La1.6 1
lineage3.1 1
spoligotype Counts
spoligotype Count
None 422
Geographic prevalence
Country level data for this variant is available for 18 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6045308 Other lineage3.1.2.2 None
SRR6046291 Other lineage3 None
SRR6045396 Other lineage4.3.1.1 None
SRR6046281 Other lineage4.9 None
ERR4830479 RR-TB lineage1.2.2.1 None
SRR6046359 Other lineage4.7 None
ERR2843515 MDR-TB lineage2.2.1 None
ERR4829285 Other lineage2.2.1 None
ERR4830509 MDR-TB lineage2.2.1 None
SRR6046528 Other lineage3.1.2.1 None
SRR6046460 HR-TB None
SRR6046456 Other lineage4.1.1.3.1 None
SRR6046534 Other lineage1.1.2 None
ERR4872152 RR-TB lineage4.6.2.2 None
SRR6046641 Other lineage4.8 None
SRR6046710 Other lineage4.8.2 None
SRR6046766 Other lineage3.1.1 None
ERR3148546 Other lineage4.3.2 None
SRR6046612 Other lineage1.1.1.1 None
SRR6046739 Other lineage1.1.2 None
SRR6046891 Other lineage4.7 None
ERR4814399 Other lineage4.6.2.2 gb
SRR7131026 Other lineage2.2.1 None
ERR4817508 Other lineage4.1.2.1 gb
ERR4815917 Other lineage2.2.1 gb
SRR6855774 Other lineage2.2.1 None
SRR6855867 Sensitive lineage4.3.2.1;lineage2.2.1 None
ERR4816757 Other lineage2.2.1 gb
SRR7131169 Other lineage4.1.2.1 None
SRR7131031 Other lineage4.2.2.2 None
SRR9971256 MDR-TB lineage2.2.1 None
SRR7131098 MDR-TB lineage4.3.3 None
SRR7131122 Other lineage2.2.1 None
SRR9971200 MDR-TB lineage4.3.2 None
SRR9970996 XDR-TB lineage4.4.1.1 None
SRR9971029 MDR-TB lineage2.2.2 None
SRR9971059 RR-TB lineage2.2.1 None
SRR9971153 Pre-XDR-TB lineage4.3.3 None
SRR7131183 MDR-TB lineage2.2.1 None
SRR7131251 Other lineage2.2.1 None
SRR9971339 MDR-TB lineage4.3.3 None
SRR9971052 MDR-TB lineage4.4.1.1 None
SRR8651617 Pre-XDR-TB lineage4.5 None
SRR8651662 Pre-XDR-TB lineage2.2.1 None
ERR4819332 Other lineage3 gb
DRR034458 Other lineage2.2 None
SRR9971201 MDR-TB lineage4.4.1.1.1 None
ERR10219868 Other lineage4.1.2.1 None
ERR4818724 Other lineage4.1.2.1 gb
ERR10796630 HR-TB None
ERR4819630 Other lineage4.8 gb
ERR10796625 RR-TB lineage4.4.1.1 None
ERR4821849 Other lineage4.5 gb
ERR4192417 Other lineage6.1.3 None
ERR3957933 Sensitive lineage4.1.1.3 None
ERR4192396 Other lineage6.1.3 None
ERR4192419 Other lineage6.1.3 None
ERR4024667 Sensitive lineage4.3.3 None
ERR4192398 Other lineage6.1.3 None
ERR2515641 Other lineage2.2.1 za
ERR4192556 Other lineage6.1.3 None
ERR4192554 Other lineage6.1.3 None
ERR4457826 Sensitive lineage4.3.3 None
ERR4800095 Pre-XDR-TB lineage2.2.1 None
ERR6197026 RR-TB lineage4.9 None
ERR9117696 Other lineage4.1.2.1 None
ERR6197034 Other lineage4.9 None
ERR6197040 Other lineage4.9 None
ERR8650527 MDR-TB lineage4.3.4.1 None
ERR9117706 Other lineage4.4 None
ERR9027228 Pre-XDR-TB lineage2.2.1 None
ERR9117714 Other lineage3.1.2 None
ERR9117763 HR-TB lineage3 None
ERR9117711 Other lineage4.3.4.2.1 None
ERR9117792 Other lineage1.1.2 None
ERR9117780 Other lineage4.1.2.1 None
ERR9117837 Other lineage4.8.2 None
ERR9117823 Other lineage1.1.1 None
ERR9117827 Other lineage1.2.2.2 None
SRR1019127 Other lineage4.9;lineage2.2 None
ERR9117841 Other lineage4.8.2 None
SRR10315587 RR-TB lineage4.1.1.3 None
SRR10315499 MDR-TB lineage2.2.1 None
SRR10315630 MDR-TB lineage4.3.3 None
SRR10315674 MDR-TB lineage2.2.1 None
SRR10315658 RR-TB lineage4.3.2.1 None
SRR10315745 Sensitive lineage2.2.1.1 None
SRR10315705 MDR-TB lineage4.4.1.1.1 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR10726045 MDR-TB lineage4.3.3 None
SRR11342657 HR-TB lineage3 None
SRR11349135 XDR-TB lineage4.3.3 None
SRR11349140 MDR-TB lineage4.1.1.3 None
SRR11349137 RR-TB lineage4.4.1.1.1 None
SRR11349138 MDR-TB lineage4.4.1.1.1 None
SRR11349148 RR-TB lineage2.2.1 None
SRR11349152 XDR-TB lineage4.3.3 None
SRR11349160 MDR-TB lineage4.4.1.1.1 None
SRR11349150 MDR-TB lineage4.1.1.3 None
SRR11349149 RR-TB lineage2.2.1 None
SRR1173521 HR-TB lineage4.9 None
SRR11349173 RR-TB lineage2.2.1 None
SRR11349194 MDR-TB lineage4.3.3 None
SRR11349209 MDR-TB lineage4.1.2.1 None
SRR1140942 Other None
SRR1172816 MDR-TB lineage4.3.3 None
SRR1173113 RR-TB lineage4.3.4 None
SRR11349175 Other lineage2.2.1 None
SRR11349185 Other lineage4.4.1.1.1 None
SRR11349208 MDR-TB lineage2.2.1 None
SRR12006586 Other lineage1.1.3.1 None
SRR1175304 MDR-TB lineage4.3.3 None
SRR15368722 Pre-XDR-TB lineage2.2.1 None
SRR13180370 Other lineage4.1.4 None
SRR16370233 Other lineage1.2.1.2 None
SRR18002896 Pre-XDR-TB lineage2.2.1 None
SRR18002902 Other lineage2.2.1 None
SRR18002972 Other lineage2.2.1 None
SRR18002932 Pre-XDR-TB lineage2.2.1 None
SRR18002960 XDR-TB lineage2.2.1 None
SRR18002929 HR-TB lineage2.2.1 None
SRR18002934 Other lineage2.2.1 None
SRR18003011 Other lineage2.2.1 None
SRR18003035 Other La1.8.1 None
SRR19224247 Other lineage1.2.1.2 None
SRR18003052 Other lineage2.2.1.1 None
SRR19304114 Other lineage1.2.1.2.1 None
SRR19303964 Other lineage4.7 None
SRR21239946 Other lineage4.1.2.1 None
SRR20970048 Other lineage4.2.2 None
SRR21239801 Sensitive lineage4.1.2.1 None
SRR21595825 Other lineage1.2.1.2.1 None
SRR21240077 Other lineage4.1.2.1 None
SRR21240103 Other lineage4.1.2.1 None
SRR21686114 Other lineage3.1.3 None
SRR21595927 HR-TB lineage2.2.1 None
SRR21677887 HR-TB lineage4 None
SRR22048392 Other lineage4.8 None
ERR4815130 Other lineage4.8 None
ERR4815298 Other lineage4.3.4.2.1 None
ERR4815118 Other lineage2.2 None
ERR4815172 Other lineage1.2.2.2 None
ERR4815197 Other lineage4 None
ERR4815255 Other lineage4.4.2 None
SRR3675485 Other lineage2.2.1 None
ERR4815193 MDR-TB lineage4.8 None
SRR3675491 Other lineage4.7 None
SRR6045768 Sensitive lineage4.1.2.1 gb
ERR4815795 Other lineage1.1.2 None
SRR6046090 HR-TB lineage4.6 gb
ERR4814356 Pre-XDR-TB lineage3.1.2 None
ERR4815413 Other lineage4.3.4.2.1 None
ERR4814362 Other lineage4.8 None
ERR4814497 HR-TB lineage4.6.2.2 None
ERR4815777 Other lineage4.9 None
ERR4814442 Other lineage4.4.1.1 None
SRR6045325 Other lineage4.8.1 gb
SRR3675213 Other lineage4 None
ERR4815419 Other lineage4.8 None
ERR4814572 Other lineage4.3.3 None
ERR4814617 Other lineage1.1.3.1 None
ERR4815452 Other lineage4.3.3 None
ERR4815488 HR-TB lineage4.4.1 None
SRR3675220 Pre-XDR-TB lineage2.2.1 None
SRR3675225 Other lineage2.2.1.2 None
ERR4814681 Other lineage2.2.1 None
ERR4814700 Other lineage4.3.3 None
ERR4815467 Other lineage3 None
ERR4814748 Other lineage4.8 None
ERR4815502 Other lineage4.1 None
ERR4814790 Other lineage4.2.1 None
SRR3675256 Other lineage4.7 None
ERR4814804 Other lineage2.2.1 None
SRR3675252 RR-TB lineage1.1.2 None
ERR4814783 Other lineage4.7 None
SRR3675251 Other lineage4.3.3 None
ERR4814896 Other lineage2.2.1.1 None
ERR4814874 MDR-TB lineage1.1.2 None
SRR3675287 Other lineage3 None
ERR4814912 HR-TB lineage4.3.4.1 None
ERR4815040 Other lineage4.2.2.2 None
ERR4814932 Other lineage4.1.1 None
ERR4814938 Other lineage4.3.2.1 None
ERR4815551 Other lineage2.2.1 None
ERR4816944 RR-TB lineage2.2 None
SRR3675452 Other lineage3 None
ERR4815080 Other lineage4.1.2.1 None
ERR4815901 Other lineage2.2 None
ERR4815903 Other lineage4.1.2.1 None
ERR4815919 Other lineage4.8 None
ERR4816993 Other lineage4.3.4.2.1 None
ERR4816971 HR-TB lineage4.3.4.1 None
ERR4816969 Other lineage4.8 None
ERR4815956 Other lineage1.1.2 None
SRR3675512 Other lineage2.2.1 None
ERR2027218 Other lineage4.6.2.2 None
ERR4816043 Other lineage4.2 None
ERR2027248 Other lineage2.2.1 None
SRR3675538 Other lineage4.8 None
ERR4816086 Other lineage4.2.2.2 None
ERR2027252 Other lineage4.8;lineage4.2.1.1 None
ERR4816093 Other lineage1.1.3 None
ERR2027230 Other lineage4.2.2.2 None
ERR4816101 Other lineage4.1.2.1 None
ERR2027285 MDR-TB lineage4.6.2.2 None
ERR2027255 HR-TB lineage4.4.1.1 None
ERR2027293 Other lineage4.3.4.2 None
ERR2027277 Other lineage4.8 None
ERR2027292 HR-TB lineage3 None
ERR4817044 Other lineage4.1.1 None
ERR4816177 Other lineage4.1.2.1 None
SRR3675556 Other lineage3 None
ERR4816232 Other lineage4 None
ERR4817478 Other lineage3 None
ERR4817055 Other lineage4.1.2.1 None
SRR3675562 Other lineage4.3.1 None
ERR4816283 Other lineage4.1.2.1 None
ERR4817368 Other lineage4.6.3 None
ERR4816531 Other lineage4.1.2 None
ERR4816403 Other lineage6.2.3 None
ERR4816493 Other lineage4.1.2.1 None
ERR4816397 Other lineage1.1.2 None
ERR4816429 Other lineage1.1.2 None
ERR4816510 Other lineage4.1.2.1 None
ERR4816677 Other lineage4.5 None
ERR4817135 Other lineage4.1.2.1 None
ERR4816649 Other lineage3 None
ERR4816610 RR-TB lineage4.3.3 None
ERR4817275 Other lineage4.2.2 None
ERR4816782 Other lineage4.1.2.1 None
ERR4816690 Other None
ERR4817435 Other lineage1.1.3.1 None
ERR4816856 Other lineage4.1.2.1 None
ERR4816882 Other lineage4.8 None
ERR4816876 Pre-XDR-TB lineage4.1.1.3.1 None
ERR4816890 HR-TB lineage4.6.2.2 None
ERR4816883 Other lineage4.5 None
ERR2513378 Other lineage3 None
ERR4816933 Other lineage4.1.1.3 None
ERR4818691 Other lineage4.8 None
ERR4818988 Other lineage1 None
ERR4817822 Other lineage4.6 None
ERR4817799 Other lineage3 None
ERR4817826 RR-TB lineage4.5 None
ERR4817874 Other lineage3 None
ERR4817853 Other lineage4.8.1 None
ERR4819002 HR-TB lineage4.8 None
ERR4818726 Other lineage4.1.2.1 None
ERR4818752 Other lineage3 None
ERR4817958 Other lineage4.2.1 None
ERR4817976 HR-TB lineage4.1.2.1 None
ERR2513054 Other lineage4.2.2.2 None
ERR4819007 Other lineage2.2.1 None
ERR4817987 Other lineage4.7 None
ERR4818776 Other lineage2.2.1 None
ERR4818407 Other lineage4.3.2 None
ERR4818787 MDR-TB lineage6 None
SAMN02585982 MDR-TB lineage4.3.3 None
ERR2513440 Other lineage4.1.1.3 None
ERR4819073 Other lineage4.1.2.1 None
ERR4818261 Other lineage1.1.2 None
ERR4818274 Other lineage4 None
ERR2513467 Other lineage1.1.2 None
ERR4818471 Other lineage2.2.1 None
ERR4818522 Pre-XDR-TB lineage3 None
ERR3276005 Other lineage4.1.2.1 nl
SRR5007165 MDR-TB lineage3 None
ERR4818952 Other lineage3 None
ERR4818580 Other lineage4.7 None
ERR2509885 RR-TB lineage3 None
ERR4818570 Other lineage4.3.3 None
SRR5007171 Other lineage2.2.1 None
SRR5007182 MDR-TB lineage3 None
SRR5007174 Other lineage4.3.4.1 None
ERR2512849 RR-TB lineage1.1.3.1 None
SRR5007180 Other None
SRR5007203 Other lineage2.2.1 None
ERR4817547 Other lineage4.2.2.1 None
SRR5007201 HR-TB lineage3 None
ERR2512941 Other lineage1.1.2 None
ERR4818964 Other lineage1.2.1.2.1 None
ERR4817645 Other lineage4.8 None
ERR4817602 Sensitive lineage4.1.2.1 None
ERR2513364 Sensitive lineage4.1.2.1 None
ERR4820717 Other lineage1.1.3 None
ERR4819131 Other lineage4 None
ERR4819140 Other lineage4.1.2.1 None
ERR2513717 Other lineage2.2.1 None
ERR4819096 Other lineage4.4.1.1 None
ERR4819191 Other lineage4.6.2.2 None
ERR4819183 Other lineage3 None
ERR4820720 Other lineage4.1.2.1 None
ERR4820247 HR-TB lineage4.9 None
ERR4819198 Other lineage2.2.1 None
ERR4820713 HR-TB lineage4.8 None
ERR4820723 RR-TB lineage4.4.1.1 None
ERR4819242 HR-TB lineage4.6.2.2 None
ERR4819262 Other lineage4.1.2.1 None
ERR4819211 Other lineage4.7 None
ERR4819217 Other lineage1.2.2.2 None
ERR4819228 Sensitive lineage4.1.1.2 None
ERR4820318 Other lineage4.2.2 None
ERR4819265 HR-TB lineage4.3.4.1 None
ERR4819284 Other lineage4.3.4.1 None
ERR4820297 Other lineage4.2.1 None
ERR4819347 Other lineage4.1.2.1 None
ERR4820719 Other lineage1.2.2.2 None
ERR4819377 Other lineage4;lineage3.1.2.1 None
ERR4819456 Other lineage4.8 None
ERR4820338 Other lineage4.2.2.2 None
ERR4819423 Other lineage4.6.2.2 None
ERR4820348 Other lineage4.1.2.1 None
ERR4820748 Other lineage3 None
ERR4819555 Other lineage4.8 None
ERR4819491 Other lineage4.1.2.1 None
ERR4819533 Other lineage1.1.2 None
SRR6152949 Other lineage1.2.1.2.1 ca
ERR4820404 Other lineage4.3.2 None
ERR4820408 Other lineage4.1.2.1 None
ERR4820761 Other lineage4.3.4.2 None
ERR4819727 Other lineage1.1.3.1 None
ERR4819636 Other lineage3.1.2 None
ERR4819640 RR-TB lineage4.6.2.2 None
ERR4819641 HR-TB lineage4.6.2.2 None
ERR4820771 Other lineage4.8 None
ERR2514455 Other lineage3 None
ERR2515823 Sensitive lineage4.3.2.1;lineage2.2.1 None
ERR4819730 Other lineage4.8 None
SRR6398097 Other lineage4.2.1.1 ca
SRR6152666 Sensitive lineage4.7 ca
ERR4819784 Other lineage4.1.2.1 None
SRR6153166 Other lineage1.2.1.2.1 ca
ERR4819821 Other lineage4.8 None
ERR4819830 Other lineage2.2.1 None
ERR2514962 Other lineage4.4 None
ERR4820827 Other lineage4.1.2 None
ERR4819867 Other lineage1.1.3.2 None
SRR6153170 Other lineage4.9 ca
ERR4820543 Other La3 None
ERR4819948 Other lineage4.4.1.1 None
ERR4819955 Other lineage3 None
ERR2514968 Other lineage4.3.3 None
ERR4820622 Other lineage4.3.4.2 None
ERR4820614 Other lineage3.1.2 None
ERR4820833 HR-TB None
ERR4820624 Other lineage4.8 None
ERR4820122 Other lineage4.3.1.1 None
ERR4820060 Other lineage4.3.3 None
ERR4820059 Other lineage3 None
ERR4820187 Other lineage4.3.3 None
ERR4820132 Other lineage4.1.2 None
ERR4820151 RR-TB lineage4.8 None
ERR4820679 Other lineage4.8 None
ERR4821776 Sensitive lineage4.2.2.2 None
ERR4821054 Other lineage3 None
ERR4820967 HR-TB None
ERR4821011 Other lineage6 None
SRR6046089 Other lineage4.1.2.1 None
ERR4821791 HR-TB lineage4.1.2.1 None
ERR4821020 Other lineage4.1.1.3.1 None
ERR4821853 Other lineage4.3.3 None
SRR6045445 Other lineage4.3.1.1 None
ERR4821085 Other lineage2.2.1 None
ERR4821417 Other lineage1.1.3.1 None
SRR6045485 Other lineage4.9 None
ERR4821222 Other lineage4.3.2.1 None
ERR4821245 Other lineage4.1.2.1 None
ERR4821286 Other lineage4.8 None
ERR4821310 Other lineage5 None
ERR4821372 Other lineage4.1.2.1 None
ERR4821899 Other lineage4.1 None
ERR4821932 Other lineage2.2.1 None
ERR4821940 Other lineage4.9 None
ERR4821981 Other lineage4.1.2.1 None
ERR4821325 Other lineage3 None
ERR4822035 Other lineage4.8 None
ERR4821409 Other lineage4.8 None
ERR4822114 Other lineage4.1.2.1 None
ERR4822104 RR-TB lineage3 None
ERR4822105 Other lineage4.1 None
ERR4821538 Other lineage3 None
ERR4822154 Other lineage4.1.2.1 None
ERR4821477 Other lineage4.8 None
ERR4821595 Other lineage4.1.1.3 None
ERR4821561 HR-TB lineage4.6.2.2 None
ERR4821568 Other lineage4.3.4.2.1 None
ERR4822193 Sensitive lineage4.2.1 None
ERR4821584 Other lineage4.8.2 None
ERR4821773 Other La1.6 None
ERR4821650 Other lineage4.1.2.1 None
ERR4821704 MDR-TB lineage4.3.3 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6045618 Other lineage3.1.2 None
SRR6045621 Other lineage4.1.1.3 None
SRR5818666 Other lineage3 None
SRR6045744 Other lineage3.1.2 None
SRR5818610 Other lineage3 None
SRR5818612 Other lineage4.2.2.2 None
SRR6045664 Other lineage4.2.1 None
SRR6045726 Other lineage3 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR5818622 Sensitive lineage4.2.2.2 None
SRR5818672 Other lineage1.2.2.2 None
SRR6045846 Other lineage4.4.1.1 None
SRR6045909 Other lineage4.8 None
SRR6045849 Other lineage4.4.1.1 None
SRR6044817 Other lineage3 None
SRR6044888 Other lineage4.1.1.3.1 None
SRR6045910 Other lineage3.1 None
SRR6045925 Other lineage4.2 None
SRR6044873 Other lineage4.1.1.3.1 None
SRR6045052 HR-TB lineage4.2.1.1 None
SRR6044916 Other lineage4.1.1 None
SRR6044957 Other lineage4.8.2 None
SRR6044993 Other lineage3 None
SRR6045045 Other lineage2.2.1 None
SRR6045064 Other lineage4.3.1.1 None
SRR6045110 Other lineage3 None
SRR6045159 Other lineage3.1.1 None
SRR6046173 Other lineage3 None
SRR6045163 Other lineage2.2.1 None
SRR6046189 Other lineage4.8 None