Run ID: ERR4815419
Sample name:
Date: 01-04-2023 13:51:20
Number of reads: 2894243
Percentage reads mapped: 91.03
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.71 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8933 | c.1632G>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472706 | n.861C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474372 | n.715C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474528 | n.871T>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474529 | n.872A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474535 | n.878A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474540 | n.883T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474541 | n.884G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476187 | n.2530T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |