lineage | Count |
---|---|
lineage4.8 | 77 |
lineage4.1.2.1 | 65 |
lineage2.2.1 | 115 |
lineage3 | 63 |
lineage4.6 | 1 |
lineage4.5 | 6 |
lineage4.1.1 | 11 |
lineage4.1.2 | 12 |
lineage4.1 | 3 |
lineage4.1.1.3 | 20 |
lineage4.9 | 61 |
lineage4.6.2.2 | 14 |
lineage4.3.2.1 | 7 |
lineage4.3.3 | 30 |
lineage5 | 2 |
lineage4.7 | 14 |
lineage4.3.4.1 | 9 |
lineage4.8.2 | 4 |
lineage3.1.2.2 | 1 |
La1.6 | 2 |
lineage4.1.1.3.1 | 4 |
lineage3.1.2 | 6 |
lineage4.2.2.2 | 10 |
lineage4.4.1.1 | 16 |
lineage3.1 | 3 |
lineage1.2.2.2 | 4 |
lineage3.1.1 | 8 |
lineage4.2.1.1 | 5 |
lineage3.1.3 | 2 |
La3 | 1 |
lineage4.3.1.1 | 4 |
lineage4.8.1 | 2 |
lineage4 | 21 |
lineage4.4.1.2 | 4 |
lineage4.2.2 | 5 |
lineage4.3.2 | 1 |
lineage4.3.2.1;lineage2.2.1 | 2 |
La1.8.1 | 16 |
lineage4.3 | 2 |
lineage1.2.2.1 | 1 |
lineage4.6.1.1 | 2 |
12 | |
lineage1.2.1.2.1 | 5 |
lineage2.2.2 | 2 |
lineage4.2.1 | 6 |
lineage4.3.4.2.1 | 4 |
lineage4.4.1.1.1 | 7 |
lineage2.2 | 6 |
lineage4.3.4.2 | 9 |
lineage4.9;lineage4.1 | 1 |
lineage4.9;lineage4.3.4 | 1 |
lineage6.2.3;lineage1.1.2 | 1 |
lineage6.1.3 | 6 |
lineage4.3.4 | 2 |
La1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.4 | 2 |
lineage2.2.1.1 | 7 |
lineage6 | 3 |
lineage1.2.1.2 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage4.6.1.2 | 6 |
lineage4.8;lineage4.3.3 | 4 |
lineage1.1.3.1 | 5 |
lineage4.1.4 | 1 |
La2 | 1 |
lineage4.4.2 | 6 |
lineage4.2.2.1 | 1 |
La1.7.1 | 3 |
lineage1.1.2 | 12 |
lineage4.9;lineage3.1.1 | 1 |
lineage2.2.1.2 | 2 |
lineage4.6.5 | 1 |
lineage4.4.1 | 1 |
lineage4.3.1 | 1 |
lineage4.3.3;lineage3 | 1 |
lineage4.2 | 1 |
lineage1.1.3 | 3 |
lineage6.2.3 | 2 |
lineage3.1.2.1 | 6 |
lineage1 | 1 |
lineage4.1.1.3.1;lineage3.1.2 | 1 |
lineage1.1.3.2 | 2 |
lineage4.9;lineage4.6.2 | 1 |
spoligotype | Count |
---|---|
None | 778 |
ID | Drug resistance | Lineage | Country iso2 | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR6045420 | Other | lineage4.1.2.1 | gb | SRR6046089 | Other | lineage4.1.2.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821085 | Other | lineage2.2.1 | None | ERR4821082 | Sensitive | lineage3 | gb | SRR6046090 | HR-TB | lineage4.6 | gb | SRR6046092 | HR-TB | lineage4.8 | gb | ERR4821849 | Other | lineage4.5 | gb | ERR4821906 | Other | lineage4.1.1 | None | ERR270777 | HR-TB | lineage4.1.2 | None | ERR4821899 | Other | lineage4.1 | None | ERR4821907 | Other | lineage4.1.1.3 | gb | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821887 | Other | lineage4.1.2.1 | None | ERR4821924 | HR-TB | lineage4.6.2.2 | gb | ERR4821220 | Other | lineage3 | None | ERR4821222 | Other | lineage4.3.2.1 | None | ERR4821940 | Other | lineage4.9 | None | ERR4821958 | Other | lineage4.3.3 | gb | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4821310 | Other | lineage5 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4821286 | Other | lineage4.8 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821331 | HR-TB | lineage4.8 | None | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4822105 | Other | lineage4.1 | None | ERR4821409 | Other | lineage4.8 | None | ERR4822104 | RR-TB | lineage3 | None | ERR4821543 | Other | lineage4.3.2.1 | gb | ERR4821538 | Other | lineage3 | None | ERR4822200 | Other | lineage4.3.4.1 | gb | ERR4821550 | Other | lineage2.2.1 | None | ERR4821556 | HR-TB | lineage4.6.2.2 | gb | ERR4822171 | Other | lineage3 | gb | ERR4821561 | HR-TB | lineage4.6.2.2 | None | ERR4821584 | Other | lineage4.8.2 | None | ERR4821641 | Other | lineage3 | gb | ERR4821595 | Other | lineage4.1.1.3 | None | ERR4822222 | Other | lineage3.1.2.2 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821650 | Other | lineage4.1.2.1 | None | ERR4821719 | Other | lineage3 | gb | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821773 | Other | La1.6 | None | ERR4821731 | Other | lineage3 | gb | SRR6045655 | Other | lineage4.1.1.3.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6046113 | Other | lineage4.1.1.3 | None | SRR5818385 | Other | lineage4.9 | None | SRR5818440 | Other | lineage4.9 | None | SRR5818409 | Other | lineage4.9 | None | SRR5818393 | Other | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | SRR5818423 | MDR-TB | lineage4.9 | None | SRR6045759 | RR-TB | lineage2.2.1 | gb | SRR6045744 | Other | lineage3.1.2 | None | SRR5818457 | Other | lineage4.9 | None | SRR5818612 | Other | lineage4.2.2.2 | None | SRR6045768 | Other | lineage4.1.2.1 | gb | SRR5818610 | Other | lineage3 | None | SRR5818662 | Sensitive | lineage4.2.2.2 | dj | SRR5818648 | Sensitive | lineage4.2.2.2 | dj | SRR5818644 | Sensitive | lineage4.2.2.2 | dj | SRR6045846 | Other | lineage4.4.1.1 | None | SRR5818684 | Other | lineage4.2.2.2 | None | SRR6045833 | Other | lineage3.1 | gb | SRR5818666 | Other | lineage3 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR5818690 | Other | lineage4.2.2.2 | None | SRR5818683 | Sensitive | lineage3.1.1 | dj | SRR6044916 | Other | lineage4.1.1 | None | SRR6044817 | Other | lineage3 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044991 | Sensitive | lineage4.8 | gb | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045045 | Other | lineage2.2.1 | None | SRR6045997 | Other | lineage3.1.3 | gb | SRR6045962 | Sensitive | La3 | gb | SRR6045104 | Sensitive | lineage4.9 | None | SRR6046173 | Other | lineage3 | None | SRR6046016 | Other | lineage4.3.1.1 | gb | SRR6045159 | Other | lineage3.1.1 | None | SRR6046189 | Other | lineage4.8 | None | SRR6045163 | Other | lineage2.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045325 | Other | lineage4.8.1 | gb | SRR6045263 | Sensitive | lineage4.9 | None | SRR6045396 | Other | lineage4.3.1.1 | None | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6046391 | Other | lineage4.1.1.3 | gb | SRR6046384 | Other | lineage4.3.1.1 | gb | ERR2851354 | RR-TB | lineage4.9 | None | ERR4830493 | MDR-TB | lineage2.2.1 | None | ERR2179840 | Sensitive | lineage3 | cn | ERR4828843 | MDR-TB | lineage4.2.2.2 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR4829333 | RR-TB | lineage4 | None | ERR4830509 | MDR-TB | lineage2.2.1 | None | ERR4828550 | MDR-TB | lineage2.2.1 | None | SRR6046442 | Other | lineage3 | None | ERR4828879 | MDR-TB | lineage3 | None | SRR6046586 | Other | lineage4.1.1.3 | gb | SRR6046457 | Other | lineage3 | gb | SRR6046641 | Other | lineage4.8 | None | SRR6046710 | Other | lineage4.8.2 | None | SRR6046646 | Other | lineage4.7 | gb | SRR6046907 | Other | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046891 | Other | lineage4.7 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | SRR6152980 | HR-TB | lineage4.8 | ca | SRR6397815 | Other | lineage4.4.1.1 | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR6153170 | Other | lineage4.9 | ca | SRR6153221 | Other | lineage4.2.2 | ca | ERR502470 | RR-TB | lineage4.9 | None | SRR6398097 | Other | lineage4.2.1.1 | ca | SRR6398013 | Other | lineage4.1.2 | ca | ERR3276155 | Other | lineage4.1.2.1 | nl | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR6896545 | Other | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR6964650 | Sensitive | lineage3 | None | SRR6855774 | Other | lineage2.2.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR6855867 | Sensitive | lineage4.3.2.1;lineage2.2.1 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | ERR3014599 | Pre-XDR-TB | lineage4.1.2.1 | tn | ERR5087846 | Other | La1.8.1 | None | ERR5087596 | Other | La1.8.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR6982530 | Other | lineage1.2.2.1 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | SRR7131109 | Pre-XDR-TB | lineage4.8 | None | SRR7131221 | Other | lineage4.6.2.2 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131169 | Other | lineage4.1.2.1 | None | SRR7131183 | MDR-TB | lineage2.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | SRR9971339 | MDR-TB | lineage4.3.3 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7517755 | HR-TB | lineage1.2.1.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR9970996 | XDR-TB | lineage4.4.1.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR8600288 | Other | La1.8.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971052 | MDR-TB | lineage4.4.1.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR8651662 | Pre-XDR-TB | lineage2.2.1 | None | SRR8651617 | Pre-XDR-TB | lineage4.5 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR8651655 | Pre-XDR-TB | lineage2.2.1 | cn | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971153 | Pre-XDR-TB | lineage4.3.3 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9971201 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | DRR034348 | Other | lineage2.2.1 | None | ERR017781 | Other | lineage3 | None | ERR036207 | Other | lineage4.9 | None | ERR10219868 | Other | lineage4.1.2.1 | None | DRR034458 | Other | lineage2.2 | None | ERR10395965 | MDR-TB | lineage4.3.4.2 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR10796556 | Other | lineage4.3.4.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796557 | Other | lineage4 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796569 | Other | lineage4.9 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796588 | Other | lineage4 | None | ERR10796592 | Other | lineage4 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796615 | Other | lineage4 | None | ERR10796597 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR10796630 | HR-TB | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3439260 | Other | La1.8.1 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3468602 | Other | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797067 | Other | La1.8.1 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR3797068 | Other | La1.8.1 | None | ERR400319 | Other | lineage4.8 | gb | ERR4192396 | Other | lineage6.1.3 | None | ERR4188286 | Other | La1.8.1 | None | ERR4192417 | Other | lineage6.1.3 | None | ERR4192398 | Other | lineage6.1.3 | None | ERR4407473 | HR-TB | lineage4.3.4 | None | ERR4192554 | Other | lineage6.1.3 | None | ERR4192419 | Other | lineage6.1.3 | None | ERR4192556 | Other | lineage6.1.3 | None | ERR4407536 | Sensitive | lineage4.4.1.1 | None | ERR4769423 | Other | La1.3 | None | ERR4553562 | MDR-TB | None | ERR4553651 | HR-TB | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4812328 | Other | lineage4.3.3 | pe | ERR4769554 | RR-TB | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4800095 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864927 | MDR-TB | lineage2.2.1 | None | ERR5530526 | MDR-TB | lineage4.3.3 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR5866420 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | ERR9027228 | Pre-XDR-TB | lineage2.2.1 | None | ERR736816 | Other | lineage4.9 | None | ERR6866918 | Other | lineage4.1.2 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9117690 | Other | lineage4.8 | None | ERR9117759 | Other | lineage3 | None | ERR9117706 | Other | lineage4.4 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9117837 | Other | lineage4.8.2 | None | ERR9117780 | Other | lineage4.1.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9787033 | Sensitive | lineage6 | None | SRR10272566 | Other | lineage4.3.3 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | ERR9907785 | RR-TB | lineage4.3.2.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | SRR10315596 | RR-TB | lineage4.7 | None | SRR10315499 | MDR-TB | lineage2.2.1 | None | SRR10315587 | RR-TB | lineage4.1.1.3 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315674 | MDR-TB | lineage2.2.1 | None | SRR10315658 | RR-TB | lineage4.3.2.1 | None | SRR10380127 | Other | lineage4.3.3 | None | SRR10315745 | Sensitive | lineage2.2.1.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR11349137 | RR-TB | lineage4.4.1.1.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR10726045 | MDR-TB | lineage4.3.3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349138 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349152 | XDR-TB | lineage4.3.3 | None | SRR11349140 | MDR-TB | lineage4.1.1.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349150 | MDR-TB | lineage4.1.1.3 | None | SRR11349175 | Other | lineage2.2.1 | None | SRR11349153 | RR-TB | lineage4.1.1 | None | SRR11349149 | RR-TB | lineage2.2.1 | None | SRR11349160 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349173 | RR-TB | lineage2.2.1 | None | SRR11349189 | MDR-TB | lineage4.1.1 | None | SRR11349185 | Other | lineage4.4.1.1.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR11349208 | MDR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140942 | Other | None | SRR1173833 | Other | lineage4.9 | None | SRR1172816 | MDR-TB | lineage4.3.3 | None | SRR1173113 | RR-TB | lineage4.3.4 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173719 | HR-TB | lineage3 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175304 | MDR-TB | lineage4.3.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR12006586 | Other | lineage1.1.3.1 | None | SRR13180370 | Other | lineage4.1.4 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR13180301 | HR-TB | lineage3 | None | SRR13180325 | HR-TB | lineage4.3.4.2 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR14519772 | Sensitive | lineage4.4.2 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR14801720 | RR-TB | lineage4.8 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR15368722 | Pre-XDR-TB | lineage2.2.1 | None | SRR15600379 | MDR-TB | lineage2.2.1.1 | None | SRR16149183 | MDR-TB | lineage4.2.2.1 | None | SRR16156832 | RR-TB | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR16370404 | HR-TB | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR1792025 | Other | La1.8.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR18002892 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002888 | RR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002934 | Other | lineage2.2.1 | None | SRR18002929 | HR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002960 | XDR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002972 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003035 | Other | La1.8.1 | None | SRR18003052 | Other | lineage2.2.1.1 | None | SRR18003048 | XDR-TB | lineage2.2.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR18003040 | MDR-TB | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18572455 | Sensitive | lineage4.9 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19303903 | Other | lineage2.2.1 | None | SRR19303964 | Other | lineage4.7 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR19304104 | Other | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR2100877 | HR-TB | lineage4.1.2 | None | SRR20970048 | Other | lineage4.2.2 | None | SRR21279393 | Sensitive | lineage2.2.1 | None | SRR21239946 | Other | lineage4.1.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21240103 | Other | lineage4.1.2.1 | None | SRR21239801 | Sensitive | lineage4.1.2.1 | None | SRR21240077 | Other | lineage4.1.2.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21595825 | Other | lineage1.2.1.2.1 | None | SRR22048550 | Other | lineage1.1.3.1 | None | SRR21595927 | HR-TB | lineage2.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22048392 | Other | lineage4.8 | None | SRR21677887 | HR-TB | lineage4 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815197 | Other | lineage4 | None | ERR4815130 | Other | lineage4.8 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815241 | Other | lineage3.1.2 | gb | ERR4815208 | Other | lineage2.2.1.1 | gb | ERR4815627 | Other | lineage4.1.1.3 | gb | SRR3675485 | Other | lineage2.2.1 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4815310 | Other | None | ERR4815641 | Other | lineage4.3.4.2 | gb | ERR4815299 | Other | lineage4.8 | gb | ERR4815680 | Other | lineage1.1.2 | gb | ERR4814355 | Other | La1.6 | gb | ERR4815319 | Other | lineage4.1.1.3 | gb | ERR4814410 | Other | lineage2.2.1 | None | ERR4814442 | Other | lineage4.4.1.1 | None | ERR4815419 | Other | lineage4.8 | None | ERR4814497 | HR-TB | lineage4.6.2.2 | None | ERR4815784 | Other | lineage2.2.1 | gb | ERR4814572 | Other | lineage4.3.3 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR4815427 | HR-TB | lineage3.1 | gb | ERR4815698 | RR-TB | lineage4.7 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3675220 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814617 | Other | lineage1.1.3.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815452 | Other | lineage4.3.3 | None | SRR3675213 | Other | lineage4 | None | SRR3675219 | Other | lineage4.9 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR4814697 | Sensitive | lineage4.4.1.1 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814700 | Other | lineage4.3.3 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4814748 | Other | lineage4.8 | None | ERR4814730 | Other | lineage4.8 | gb | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR1750907 | RR-TB | None | ERR4815467 | Other | lineage3 | None | SRR3675225 | Other | lineage2.2.1.2 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4815486 | Other | lineage4.2.2 | gb | ERR4815488 | HR-TB | lineage4.4.1 | None | ERR4814804 | Other | lineage2.2.1 | None | ERR4814813 | Sensitive | lineage4.3.1 | gb | ERR4814801 | Other | lineage4.8 | gb | SRR3675251 | Other | lineage4.3.3 | None | SRR3675239 | Sensitive | lineage4.3.4.1 | gb | SRR3675256 | Other | lineage4.7 | None | ERR1750944 | Other | lineage4.1.2 | za | ERR4814824 | Other | lineage3 | None | ERR4814874 | MDR-TB | lineage1.1.2 | None | SRR3675265 | Other | lineage4 | None | ERR4814881 | Other | lineage2.2.1 | gb | ERR4814939 | Other | lineage4.3.3;lineage3 | gb | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4814932 | Other | lineage4.1.1 | None | ERR4815532 | Other | lineage3 | gb | ERR4814912 | HR-TB | lineage4.3.4.1 | None | ERR4814954 | Other | lineage3.1 | gb | ERR4815550 | Other | lineage4 | None | ERR4815551 | Other | lineage2.2.1 | None | ERR4815040 | Other | lineage4.2.2.2 | None | ERR4815005 | Other | lineage4.1.2.1 | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675286 | Other | lineage4.1.2.1 | gb | ERR4815065 | Other | lineage4.1.2.1 | gb | ERR4815101 | Other | lineage3 | gb | ERR4815079 | RR-TB | lineage3 | None | ERR4815089 | HR-TB | lineage2.2.1 | gb | ERR4815080 | Other | lineage4.1.2.1 | None | ERR2229541 | Other | lineage4.8 | None | ERR4815849 | Other | lineage3.1.1 | None | ERR2228965 | Other | lineage4.8 | None | ERR2229540 | Other | lineage4.8 | None | ERR4815901 | Other | lineage2.2 | None | ERR4816955 | Other | lineage4.3.3 | gb | SAMEA3501015 | Other | lineage4.8 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4815919 | Other | lineage4.8 | None | ERR4815956 | Other | lineage1.1.2 | None | ERR4816988 | Other | lineage3 | gb | SRR3675513 | Other | lineage4.8 | None | ERR4816971 | HR-TB | lineage4.3.4.1 | None | ERR4816043 | Other | lineage4.2 | None | ERR4816009 | Other | lineage1.1.2 | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | ERR4817342 | Other | lineage4.1.1 | None | ERR4816093 | Other | lineage1.1.3 | None | ERR2027250 | Other | lineage3.1.2 | None | SRR3675538 | Other | lineage4.8 | None | ERR4816089 | Other | lineage4.2.2.2 | gb | ERR2027253 | Other | lineage6.2.3 | None | ERR4816101 | Other | lineage4.1.2.1 | None | ERR2027285 | MDR-TB | lineage4.6.2.2 | None | ERR4816103 | Sensitive | lineage3 | gb | ERR4817354 | Other | lineage3 | gb | ERR4817044 | Other | lineage4.1.1 | None | ERR4816182 | Other | lineage3.1.2.1 | gb | ERR2027277 | Other | lineage4.8 | None | ERR4816258 | Other | lineage2.2.1.1 | gb | ERR4816231 | Other | lineage4 | None | ERR4817478 | Other | lineage3 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR4816283 | Other | lineage4.1.2.1 | None | ERR4817069 | RR-TB | None | ERR2229147 | Other | lineage4.8 | None | ERR4816350 | Other | lineage4.9 | gb | ERR4816353 | Other | lineage2.2.1 | gb | ERR4816403 | Other | lineage6.2.3 | None | ERR4816397 | Other | lineage1.1.2 | None | ERR4817086 | Other | lineage1.2.2.2 | gb | ERR4816419 | HR-TB | lineage2.2.1 | gb | SRR3675587 | Sensitive | lineage3 | None | ERR4816464 | Other | lineage3 | None | ERR4816429 | Other | lineage1.1.2 | None | ERR4816437 | Other | lineage3 | gb | ERR4816510 | Other | lineage4.1.2.1 | None | ERR4817488 | Other | lineage4.3.4.2.1 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR2229204 | Other | lineage4.8 | None | ERR4816511 | Other | lineage3 | gb | ERR2229811 | Other | lineage4.8 | dk | ERR4817134 | HR-TB | lineage2.2.1 | None | ERR4817135 | Other | lineage4.1.2.1 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816562 | Other | lineage4 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4817169 | Other | lineage4.7 | gb | ERR4816677 | Other | lineage4.5 | None | ERR4816649 | Other | lineage3 | None | ERR4817497 | Other | lineage1.1.2 | None | ERR2229366 | Other | lineage4.8 | None | ERR4816681 | Other | lineage4.1.2.1 | gb | ERR4816718 | Other | lineage4.1.2.1 | gb | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816760 | Sensitive | lineage4.1.2.1 | None | ERR4817426 | Other | lineage4.1 | gb | ERR2229436 | Other | lineage4.8 | None | ERR4817278 | Other | lineage4.8 | gb | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4817434 | Other | lineage3 | None | ERR4817274 | Other | lineage4.9 | gb | ERR4816846 | Other | lineage6 | gb | ERR2228810 | RR-TB | lineage4 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR2228813 | Other | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR4817294 | Other | lineage4.1.2 | None | ERR4817301 | Other | lineage4.9 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4816876 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR2229804 | Other | lineage4 | None | ERR4816890 | HR-TB | lineage4.6.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4815816 | Other | lineage4.5 | gb | ERR4815811 | HR-TB | lineage4.2.1.1 | None | ERR2228899 | RR-TB | lineage4.8 | None | SRR4033523 | Other | lineage2.2 | None | ERR2229810 | Other | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR2228910 | Other | lineage4.8 | None | ERR4815814 | Other | lineage3 | gb | ERR4817863 | Other | La1.8.1 | None | ERR4819062 | Other | lineage3 | gb | ERR4818669 | Sensitive | lineage4.8 | gb | ERR2513378 | Other | lineage3 | None | ERR4818988 | Other | lineage1 | None | ERR4818691 | Other | lineage4.8 | None | ERR4817853 | Other | lineage4.8.1 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR2513018 | Other | lineage3 | gb | ERR4817874 | Other | lineage3 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4817977 | Other | lineage4.8 | gb | ERR2513392 | Other | lineage4.3.2.1 | gb | ERR4817915 | RR-TB | lineage4.9 | None | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR4817958 | Other | lineage4.2.1 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR2510759 | Other | lineage4.8 | it | ERR4819007 | Other | lineage2.2.1 | None | ERR2510768 | Other | lineage4.8 | it | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR2513413 | Other | lineage3.1.2.1 | None | ERR4818752 | Other | lineage3 | None | ERR2510794 | Other | lineage4.3.4.2 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR2510792 | Sensitive | lineage4.9 | it | ERR2510796 | HR-TB | lineage4.3.4.2 | it | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818064 | Other | lineage4.8 | None | ERR4818776 | Other | lineage2.2.1 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR2513430 | Other | lineage4.1.2.1 | gb | ERR4818072 | Other | lineage4.1.2.1 | gb | ERR4818801 | Other | lineage4.7 | gb | ERR4819017 | RR-TB | lineage3 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | ERR4818084 | Other | lineage3.1.1 | gb | ERR2512423 | Other | lineage4.1.1.3 | None | ERR2513201 | Sensitive | lineage3 | gb | ERR2512494 | Other | lineage4.3.3 | gb | ERR4818187 | Other | lineage4.6.1.1 | gb | ERR4818188 | Other | lineage4.1.2.1 | None | ERR4818192 | Other | lineage4.1.2.1 | gb | ERR4818200 | Other | lineage3.1.2 | gb | ERR4818261 | Other | lineage1.1.2 | None | ERR4818846 | Other | lineage4.1.2.1 | gb | ERR4818224 | Sensitive | lineage4.4.1.1 | None | ERR4818257 | Other | lineage4.1.2 | gb | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818874 | Other | lineage4.1.2.1 | gb | ERR4818918 | Other | lineage1.1.2 | gb | ERR2513231 | RR-TB | lineage4.3.4.2 | None | ERR4818890 | Other | lineage4.7 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR2512630 | Other | lineage4.8 | gb | ERR2512739 | Sensitive | lineage4.1.1 | gb | ERR4818471 | Other | lineage2.2.1 | None | ERR4818370 | Other | lineage4.1.1 | None | ERR4818499 | Sensitive | lineage4.9 | None | ERR4818952 | Other | lineage3 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | ERR2512812 | HR-TB | lineage3 | gb | ERR4817619 | Other | lineage4.1.2.1 | gb | ERR4819080 | Other | lineage4.1.2.1 | gb | SRR5007182 | MDR-TB | lineage3 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4817561 | Other | lineage4.7 | gb | SRR5007203 | Other | lineage2.2.1 | None | SRR5007199 | Other | lineage4.1.2.1 | None | ERR2512884 | Other | lineage4.6.2.2 | gb | ERR2513589 | Other | lineage3.1.3 | None | ERR4818964 | Other | lineage1.2.1.2.1 | None | ERR2513364 | Sensitive | lineage4.1.2.1 | None | ERR2513356 | Other | lineage4.5 | gb | ERR4817645 | Other | lineage4.8 | None | ERR4819125 | Other | lineage2.2.1 | gb | ERR4819093 | Other | lineage4.3.3 | None | ERR4819082 | Other | lineage1.1.2 | gb | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4819140 | Other | lineage4.1.2.1 | None | ERR4819131 | Other | lineage4 | None | ERR2513680 | Other | lineage3 | gb | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4820231 | HR-TB | lineage4.6.1.2 | gb | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR2513699 | Other | lineage4.1.2 | gb | ERR4819176 | Other | lineage3.1.1 | gb | ERR2513700 | Other | lineage4.4.1.1 | gb | ERR2513717 | Other | lineage2.2.1 | None | ERR4820717 | Other | lineage1.1.3 | None | ERR2513734 | Other | lineage4.1.2.1 | gb | ERR4820247 | HR-TB | lineage4.9 | None | ERR2513794 | Other | lineage4.8 | gb | ERR4819183 | Other | lineage3 | None | ERR4819196 | Other | lineage4.1.1 | gb | ERR4820713 | HR-TB | lineage4.8 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4819191 | Other | lineage4.6.2.2 | None | ERR4819209 | Sensitive | lineage4.3.4.2.1 | gb | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR4819423 | Other | lineage4.6.2.2 | None | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | ERR4819347 | Other | lineage4.1.2.1 | None | ERR4819404 | Other | lineage4.1.2.1 | gb | ERR4819284 | Other | lineage4.3.4.1 | None | ERR4819293 | Other | lineage4.1.1 | gb | ERR4820318 | Other | lineage4.2.2 | None | ERR4819379 | Sensitive | lineage4.1.2.1 | gb | ERR4820719 | Other | lineage1.2.2.2 | None | ERR4819458 | Other | lineage4.1.1.3.1 | gb | ERR4820338 | Other | lineage4.2.2.2 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4820348 | Other | lineage4.1.2.1 | None | ERR4819576 | Other | lineage4.2.2 | gb | ERR2514315 | Other | lineage3 | gb | ERR4819555 | Other | lineage4.8 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4820761 | Other | lineage4.3.4.2 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | ERR2514404 | Other | lineage3.1.2.1 | gb | ERR4819699 | HR-TB | lineage4.6.2.2 | gb | ERR2514479 | Other | lineage4.8.2 | gb | ERR4819727 | Other | lineage1.1.3.1 | None | ERR2515823 | Sensitive | lineage4.3.2.1;lineage2.2.1 | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819766 | Other | lineage4.4.1.1 | None | ERR4819770 | Other | lineage4.8 | gb | ERR2514608 | Other | lineage1.1.3 | gb | ERR4819782 | Other | lineage1.2.1.2.1 | gb | ERR2514609 | HR-TB | lineage3 | gb | ERR4820498 | HR-TB | lineage4.8 | gb | ERR4820492 | Other | lineage2.2.1 | None | ERR4819821 | Other | lineage4.8 | None | ERR4819805 | Other | lineage4.1.2.1 | gb | ERR4820503 | Other | lineage2.2.1 | None | ERR2514702 | Other | lineage4.1.2.1 | gb | ERR4819830 | Other | lineage2.2.1 | None | ERR4819867 | Other | lineage1.1.3.2 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR2514838 | Other | lineage4.8 | gb | ERR4819899 | Other | lineage3.1.2.1 | None | ERR4820827 | Other | lineage4.1.2 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4820001 | Other | lineage4.8 | gb | ERR4820572 | Other | lineage1.2.1.2.1 | None | ERR4820586 | Other | lineage3 | gb | ERR2514968 | Other | lineage4.3.3 | None | ERR4819955 | Other | lineage3 | None | ERR4820580 | Sensitive | lineage4.9;lineage4.6.2 | None | ERR4820033 | Other | lineage3 | gb | ERR4820614 | Other | lineage3.1.2 | None | ERR4820833 | HR-TB | None | ERR2515062 | Other | lineage2.2.1.2 | gb | ERR4820624 | Other | lineage4.8 | None | ERR4820122 | Other | lineage4.3.1.1 | None | ERR4820060 | Other | lineage4.3.3 | None | ERR4820131 | Sensitive | lineage4.9 | None | ERR4820666 | Other | lineage4.8 | gb | ERR4820853 | Sensitive | lineage4.1.2.1 | gb | ERR4820132 | Other | lineage4.1.2 | None | ERR4820684 | Other | lineage3 | gb | ERR4820184 | MDR-TB | lineage3 | gb | ERR4820188 | Other | lineage3 | gb | ERR4820187 | Other | lineage4.3.3 | None | ERR4820907 | Other | lineage4.1.2.1 | gb | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4820967 | HR-TB | None |
---|