EBG00000313325 - n.828T>G
Drug resistance types
16 Sensitive
54 RR-TB
22 HR-TB
50 MDR-TB
27 Pre-XDR-TB
4 XDR-TB
181 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.2.1 | 3 |
| lineage4.8 | 63 |
| lineage4.3.3;lineage4.8 | 3 |
| lineage4.4.1.1.1 | 5 |
| lineage4.2.1 | 4 |
| lineage4.7 | 5 |
| lineage4.9 | 42 |
| lineage2.2.1 | 71 |
| lineage4.3.3 | 15 |
| lineage6.1.3 | 3 |
| lineage3 | 10 |
| lineage4.4.1.1 | 7 |
| La1.7.1 | 3 |
| lineage4.1.2.1 | 17 |
| lineage4.2.1.1 | 4 |
| lineage2.2.1.1 | 3 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.4.1.2 | 3 |
| lineage4.2.2 | 1 |
| lineage4.1.2 | 2 |
| La2 | 1 |
| lineage4 | 2 |
| La1.8.1 | 11 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.5 | 3 |
| lineage1.2.1.2 | 2 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage4.1.1.3 | 9 |
| lineage2.2.2 | 3 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage4.8;lineage4.9 | 1 |
| lineage4.3.2 | 2 |
| lineage4.4.2 | 4 |
| lineage6.1.2 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.6.2.2 | 1 |
| La3 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.1.4 | 1 |
| lineage4.6.1.1 | 1 |
| lineage3.1.1 | 4 |
| lineage1.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.6.1.2 | 4 |
| lineage1.2.2.2 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.4.2 | 2 |
| lineage1.1.3.2 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage6.2.3 | 1 |
| lineage4.3 | 2 |
| La1.3 | 1 |
| lineage4.3.1.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4.4 | 1 |
| lineage4.8.1 | 1 |
| lineage4.1.1.1 | 3 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 354 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR11349137 | RR-TB | lineage4.4.1.1.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR7645928 | Other | lineage4.7 | None | ERR10796560 | Other | lineage4.9 | None | SRR19303903 | Other | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR2851354 | Other | lineage4.9 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | ERR4192398 | Other | lineage6.1.3 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5007165 | Other | lineage3 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR10315674 | MDR-TB | lineage2.2.1 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | SRR11342684 | HR-TB | lineage4.4.1.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR3675513 | Other | lineage4.8 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR1173421 | Other | lineage4.9 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR4828879 | HR-TB | lineage3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | SRR11349175 | Other | lineage2.2.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR20970048 | Other | lineage4.2.2 | None | ERR270777 | HR-TB | lineage4.1.2 | None | SRR10315499 | MDR-TB | lineage2.2.1 | None | SRR3675389 | Other | lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR13888750 | Other | La2 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR21469201 | Other | La1.7.1 | None | SRR7496471 | Sensitive | lineage4 | None | SRR10380127 | Other | lineage4.3.3 | None | SRR6855774 | Other | lineage2.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR11349208 | MDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7236134 | Other | La1.8.1 | None | SRR21279393 | Sensitive | lineage2.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | SAMEA3450033 | Other | lineage4.8 | None | SRR1173113 | Other | lineage4.3;lineage4.9 | None | ERR4815816 | Other | lineage4.5 | gb | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR2229366 | Other | lineage4.8 | None | ERR5311077 | Other | La1.8.1 | None | ERR4800095 | Pre-XDR-TB | lineage2.2.1 | None | SRR1019127 | Other | lineage4.9 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR10796568 | Other | lineage4.9 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR3675256 | Other | lineage4.7 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR978735 | Other | lineage4.8 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR4821849 | Other | lineage4.5 | gb | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | DRR034348 | Other | lineage2.2.1 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR978694 | Other | lineage4.8 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR5818610 | Other | lineage3 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR9027228 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR7069754 | Other | lineage4.3.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4820187 | Other | lineage4.3.3 | None | ERR4192419 | Other | lineage6.1.3 | None | ERR4821085 | Other | lineage2.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR11349185 | Other | lineage4.4.1.1.1 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069802 | Other | lineage3 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR3675220 | Pre-XDR-TB | lineage2.2.1 | None | SRR15368722 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007203 | Other | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | ERR9907785 | RR-TB | lineage4.3.2.1 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR7068939 | Other | lineage4.2.2.2 | None | SRR7070170 | Sensitive | lineage4.8 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | ERR978693 | Other | lineage4.8 | None | ERR3468613 | Other | La1.8.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4812328 | Other | lineage4.3.3 | pe | SRR6398097 | Other | lineage4.2.1.1 | ca | ERR4814497 | HR-TB | lineage4.6.2.2 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR911930 | Other | lineage4.8 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | ERR3014599 | Pre-XDR-TB | lineage4.1.2.1 | tn | SRR6045962 | Sensitive | La3 | gb | ERR9117780 | Sensitive | lineage4.1.2.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR13180301 | HR-TB | lineage3 | None | SRR11349149 | RR-TB | lineage2.2.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | ERR2229541 | Other | lineage4.8 | None | DRR034458 | Other | lineage2.2.2 | None | SRR13180370 | Other | lineage4.1.4 | None | ERR978747 | Other | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR2228899 | Other | lineage4.8 | None | SRR7236330 | Other | La1.8.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR10614047 | Sensitive | lineage4.9 | None | SRR14801720 | Other | lineage4.8 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070482 | Other | lineage4.1.2.1 | None | SRR7069430 | Other | lineage3.1.1 | None | SRR7069523 | Other | lineage1.1.3 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR978746 | RR-TB | lineage4.8 | None | SRR18003052 | Other | lineage2.2.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR22048392 | Other | lineage4.8 | None | SRR11349152 | XDR-TB | lineage4.3.3 | None | ERR2229147 | Other | lineage4.8 | None | SRR1175304 | HR-TB | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR21469202 | Other | La1.7.1 | None | SRR1173833 | Other | lineage4.9 | None | SRR7069199 | Other | lineage4.8 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | SRR18003048 | XDR-TB | lineage2.2.1 | None | ERR10219868 | Other | lineage4.1.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR3675538 | Other | lineage4.8 | None | ERR2027250 | Other | lineage3.1.2 | None | SRR6046442 | Other | lineage3 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR5007182 | MDR-TB | lineage3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR5818684 | Other | lineage4.2.2.2 | None | SRR1173521 | Other | lineage4.9 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR21239801 | Sensitive | lineage4.1.2.1 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10395965 | MDR-TB | lineage4.3.4.2 | None | SRR21240077 | Other | lineage4.1.2.1 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR19303964 | Other | lineage4.7 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR1140942 | Other | lineage2.2.1;lineage4 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR13180325 | HR-TB | lineage4.3.4.2 | None | ERR978761 | Other | lineage4.8 | None | SRR1181403 | Other | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR7236399 | Other | La1.8.1 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4192556 | Other | lineage6.1.3 | None | SRR1792025 | Other | La1.8.1 | None | SRR1180440 | Other | lineage4.9 | None | ERR4816403 | Other | lineage6.2.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR2229436 | Other | lineage4.8 | None | ERR10796594 | Other | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR6046117 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR978752 | Other | lineage4.8 | None | SRR5818385 | Other | lineage4.9 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | ERR4769423 | Other | La1.3 | None | SRR7070469 | Other | lineage4.3.1.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR3675225 | Other | lineage2.2.1.2 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR5818457 | Other | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR10796556 | Other | lineage4.3.4.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR2228838 | Other | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR978748 | Other | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR9970996 | XDR-TB | lineage4.4.1.1 | None | ERR5087596 | Other | La1.8.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR6152980 | HR-TB | lineage4.8 | ca | SRR6045325 | Other | lineage4.8.1 | gb | SRR19304104 | Other | lineage4.8 | None | ERR5087846 | Other | La1.8.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR2228815 | Other | lineage4.8 | None | SRR12062547 | HR-TB | lineage2.2.1 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR1172816 | MDR-TB | lineage4.3.3 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR736816 | Other | lineage4.9 | None | ERR4815040 | Other | lineage4.2.2.2 | None | SRR6046189 | Other | lineage4.8 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR10726045 | MDR-TB | lineage4.3.3 | None | ERR2600422 | MDR-TB | lineage2.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | SRR11349189 | MDR-TB | lineage4.1.1.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR11349138 | MDR-TB | lineage4.4.1.1.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR4033549 | Other | lineage2.2.2 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR11349153 | RR-TB | lineage4.1.1.1 | None | ERR911929 | Other | lineage4.8 | None | SRR1184329 | Other | lineage4.9 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR5818409 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR4815419 | Other | lineage4.8 | None | SRR1792022 | Other | La1.8.1 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR7069880 | MDR-TB | lineage3 | None | ERR867519 | Other | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR6045045 | Other | lineage2.2.1 | None | ERR2229811 | Other | lineage4.8 | dk | SRR1792011 | Other | La1.8.1 | None | ERR3276155 | Other | lineage4.1.2.1 | nl | ERR10796566 | Other | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR21239946 | Other | lineage4.1.2.1 | None | SRR5818440 | Other | lineage4.9 | None | SRR21240103 | Other | lineage4.1.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002929 | HR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR10796625 | Other | lineage4.4.1.1 | None | ERR4819867 | Other | lineage1.1.3.2 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR1181256 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR7068919 | Sensitive | lineage4.4.1.1 | None | SRR7131061 | Other | lineage2.2.1 | None | ERR10796592 | Other | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR5163959 | Other | lineage4.9 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR5818423 | RR-TB | lineage4.9 | None |
|---|
