TB-Profiler result

Run: SRR5818457
Summary

Run ID: SRR5818457

Sample name:

Date: 04-04-2023 11:37:29

Number of reads: 826627

Percentage reads mapped: 99.75

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.19 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 0.98
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.73
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.75
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.69
rrs 1472282 n.437T>G non_coding_transcript_exon_variant 0.18
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 0.18
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.18
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.18
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.19
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.17
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.23
rrs 1472332 n.487A>G non_coding_transcript_exon_variant 0.24
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.23
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.27
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.28
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.31
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.31
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.18
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.16
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.36
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.34
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.39
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.15
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 0.19
rrs 1472579 n.734G>A non_coding_transcript_exon_variant 0.16
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.31
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.15
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.23
rrs 1472585 n.740A>C non_coding_transcript_exon_variant 0.14
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.33
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.19
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.13
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.25
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.22
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.15
rrs 1472674 n.829T>G non_coding_transcript_exon_variant 0.18
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.14
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.14
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.22
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.2
tlyA 1917972 c.33A>G synonymous_variant 1.0
eis 2715270 c.63G>C synonymous_variant 0.98
ahpC 2726184 c.-9A>C upstream_gene_variant 0.41
ethA 4326764 p.Ala237Val missense_variant 0.25