lineage | Count |
---|---|
lineage4.9 | 113 |
lineage4.7 | 10 |
lineage3.1.2.2 | 4 |
18 | |
lineage4.1.1.3 | 14 |
lineage4.6.5 | 1 |
La1.3 | 5 |
lineage4.2.1.1 | 3 |
lineage2.2.1.1 | 6 |
lineage4.1.2.1 | 62 |
lineage4.3.2 | 5 |
lineage2.2.2 | 9 |
lineage4.6 | 4 |
lineage4.3.3 | 23 |
lineage4.1 | 2 |
lineage4.6.1.1 | 5 |
lineage4.3.4.1 | 6 |
lineage5.1.1 | 2 |
lineage2.2.1 | 125 |
lineage3 | 73 |
lineage4.3 | 2 |
La1.8.1 | 7 |
lineage4.3.4.2 | 13 |
lineage4.8 | 41 |
lineage4.1.2 | 11 |
lineage4.6.2.2 | 9 |
lineage3.1.2.1 | 8 |
lineage1.2.1.2 | 4 |
lineage4.3.2.1 | 4 |
lineage4.2.1 | 16 |
lineage4.2.1;lineage2.2.1 | 1 |
La1.2 | 3 |
lineage1.1.2 | 17 |
lineage4.3.4.2.1 | 10 |
lineage1.1.1.1 | 2 |
lineage4.9.1 | 1 |
lineage4.9;lineage1.1 | 1 |
lineage4.9;lineage4.1 | 1 |
lineage4.9;lineage4.3.4 | 1 |
lineage4 | 19 |
lineage4.1.1 | 10 |
lineage4.3.4 | 1 |
lineage4.4.1.2 | 2 |
lineage1.1.3.1 | 4 |
La1.7.X-unk4 | 1 |
lineage4.4.1.1 | 14 |
lineage4.9;La1.3 | 1 |
lineage1.1.3.3 | 2 |
lineage1.2.2.2 | 4 |
lineage3.1.3 | 3 |
lineage3.1.1 | 8 |
lineage4.4.1.1.1 | 2 |
lineage4.6.1.2 | 6 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
La1.6 | 1 |
La2 | 1 |
lineage4.4.2 | 5 |
La1.7.1 | 2 |
lineage4.2.2.1 | 6 |
lineage4.4 | 2 |
La1.4 | 1 |
lineage4.4.2;lineage4.2.2;lineage2.2.1 | 1 |
lineage2.2.2;lineage2.2.1 | 1 |
lineage2.2 | 4 |
lineage4.5 | 4 |
lineage4.2.2 | 1 |
lineage6 | 2 |
lineage1.1.1 | 3 |
lineage4.1.3 | 3 |
lineage4.9;lineage3.1.1 | 1 |
lineage4.3.3;lineage3 | 1 |
lineage3.1 | 2 |
lineage5 | 2 |
lineage1.2.1.1 | 1 |
lineage4.2.2.2 | 4 |
lineage1.2.1.2.1 | 1 |
La1.2.BCG | 2 |
lineage4;lineage3 | 1 |
lineage4.1.1.3.1 | 3 |
lineage3.1.2 | 2 |
La3 | 1 |
lineage6.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage2.1 | 1 |
lineage4.8.2 | 2 |
lineage4.2.2.2;lineage3 | 1 |
lineage4.6.3 | 1 |
spoligotype | Count |
---|---|
None | 785 |
ID | Drug resistance | Lineage | Country iso2 | SRR6046497 | Other | lineage4.9 | None | SRR6046646 | Other | lineage4.7 | gb | SRR6046737 | Other | lineage4.9 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046729 | Other | None | SRR6046839 | Other | lineage4.9 | None | SAMN02585928 | Other | lineage4.1.1.3 | za | SRR6046848 | Other | lineage4.6.5 | None | ERR3077969 | Other | La1.3 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR6152838 | Other | lineage2.2.1.1 | ca | ERR502479 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR3276155 | Other | lineage4.1.2.1 | nl | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4831727 | MDR-TB | lineage2.2.2 | None | ERR4872193 | MDR-TB | lineage4.6 | None | SRR6896545 | Other | lineage4.9 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR7131061 | Other | lineage2.2.1 | None | ERR3275190 | Other | lineage3 | nl | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131104 | HR-TB | lineage4.3.4.2 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131114 | Other | lineage4.1.2 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131196 | Other | lineage4.8 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131198 | Other | lineage4.3.3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131221 | Other | lineage4.6.2.2 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131234 | Other | lineage4.9 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR7131232 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131288 | Other | lineage4.6.2.2 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7517720 | MDR-TB | lineage3.1.2.1 | None | SRR7131297 | Other | lineage1.2.1.2 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR8600046 | Other | La1.8.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645895 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645929 | MDR-TB | lineage2.2.1 | None | SRR8600288 | Other | La1.8.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7645973 | Other | lineage4.3.4.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755642 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755652 | Pre-XDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755657 | Other | lineage4.8 | None | SRR7851312 | Other | La1.2 | None | SRR7755695 | MDR-TB | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9217359 | MDR-TB | lineage1.1.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | DRR185048 | Other | lineage2.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185000 | Other | lineage1.1.1.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR037504 | Other | lineage4.9.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1035327 | Pre-XDR-TB | lineage4.7 | br | ERR10748474 | MDR-TB | lineage4.3.3 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796556 | Other | lineage4.3.4.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796569 | Other | lineage4.9 | None | ERR10796588 | Other | lineage4 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796599 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796627 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796629 | Other | lineage4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796634 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR123943 | HR-TB | lineage1.1.3.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283053 | Other | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3439265 | Other | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3797035 | Other | lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797068 | Other | La1.8.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR400319 | Other | lineage4.8 | gb | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4769436 | Other | La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769480 | Other | La1.3 | None | ERR4772215 | Other | La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4798852 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4800297 | Other | lineage4.1.1.3 | in | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811708 | HR-TB | lineage4 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR5908124 | Other | lineage4.8 | None | ERR5979407 | Other | lineage3 | None | ERR5865106 | MDR-TB | lineage4.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR6197026 | RR-TB | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197028 | Other | lineage4.9 | None | ERR6197032 | Other | lineage4.9 | None | ERR6197040 | Other | lineage4.9 | None | ERR6197036 | Other | lineage4 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR6197042 | RR-TB | lineage4.9 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR6866918 | Other | lineage4.1.2 | None | ERR751345 | Other | lineage5.1.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9117728 | Other | lineage3 | None | ERR9117699 | Other | lineage4.1.2.1 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117759 | Other | lineage3 | None | ERR9117799 | Sensitive | lineage4.8 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR9119591 | MDR-TB | lineage4.6 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | SRR10272566 | Other | lineage4.3.3 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315715 | MDR-TB | lineage4.4.1.1.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10869285 | Pre-XDR-TB | lineage2.2.2 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140736 | RR-TB | None | SRR1172282 | Other | lineage4.9 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172213 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173182 | Other | lineage4.6.1.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR13888750 | Other | La2 | None | SRR1180440 | Other | lineage4.9 | None | SRR1183034 | Sensitive | lineage4.9 | None | SRR1182985 | Pre-XDR-TB | lineage3 | None | SRR1184012 | Other | lineage4.1.1.3 | None | SRR11972159 | MDR-TB | lineage2.2.1 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181130 | Other | lineage4.1.1.3 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR11972447 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR13986566 | Other | La1.7.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR14782555 | Pre-XDR-TB | lineage2.2.1 | None | SRR16149117 | MDR-TB | lineage4.2.2.1 | None | SRR16058124 | Sensitive | lineage3 | None | SRR16058726 | Other | lineage2.2.1 | None | SRR16149126 | MDR-TB | lineage4.2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR16370694 | Sensitive | lineage4.1.1 | None | SRR18002873 | Pre-XDR-TB | lineage4.4.2;lineage4.2.2;lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002888 | RR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002892 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002986 | MDR-TB | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18213685 | HR-TB | lineage1.1.3.1 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303775 | Other | lineage3 | None | SRR19233762 | Sensitive | lineage4.1.1 | None | SRR19303784 | Other | lineage4.2.1 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19304096 | Other | La1.2 | None | SRR19303899 | Other | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19304094 | Other | lineage6 | None | SRR19303916 | Other | lineage4.1.2.1 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR21727888 | Other | lineage1.2.1.2 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR2101087 | Other | lineage4.4.2 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR22424905 | RR-TB | lineage4.9 | None | ERR4815278 | Other | lineage4.8 | None | ERR4815104 | Other | lineage4.8 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR4815204 | Other | lineage2.2.1.1 | gb | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4814291 | Sensitive | lineage4.3.2 | gb | ERR4815310 | Other | None | ERR4814415 | Other | lineage3.1.1 | None | ERR4815281 | Other | lineage4.4.2 | None | ERR4814341 | Other | lineage4.7 | None | ERR4814438 | HR-TB | lineage4.1.2.1 | gb | SRR3105797 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814496 | RR-TB | lineage4.1.2 | None | ERR1815538 | Other | La1.7.1 | None | ERR4815680 | Other | lineage1.1.2 | gb | ERR4815775 | Other | lineage4.3.4.2 | gb | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4814671 | Other | lineage3 | gb | ERR4815443 | HR-TB | lineage4.1 | gb | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4814700 | Other | lineage4.3.3 | None | ERR4814699 | HR-TB | lineage4.1.2.1 | gb | ERR4814789 | Other | lineage3 | gb | ERR4815787 | Other | lineage2.2.1 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4818401 | HR-TB | lineage2.2.1 | gb | ERR4814821 | Other | lineage2.2.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR4815499 | Other | lineage4.3.4.2 | None | ERR4815738 | Other | lineage3 | None | ERR4814874 | MDR-TB | lineage1.1.2 | None | ERR4815532 | Other | lineage3 | gb | ERR176605 | HR-TB | lineage4.3.4.2.1 | mw | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675282 | Other | None | ERR4814905 | Other | lineage4.8 | gb | ERR4814976 | Other | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | ERR4814939 | Other | lineage4.3.3;lineage3 | gb | ERR4814954 | Other | lineage3.1 | gb | ERR4815905 | Other | lineage1.2.2.2 | gb | ERR4815556 | RR-TB | lineage3 | None | ERR4815849 | Other | lineage3.1.1 | None | ERR2446456 | HR-TB | lineage4.4.1.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR4815869 | Other | lineage3 | gb | ERR4815901 | Other | lineage2.2 | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4815065 | Other | lineage4.1.2.1 | gb | ERR4815079 | RR-TB | lineage3 | None | ERR1198990 | Other | lineage4.6.1.1 | ug | ERR4816944 | RR-TB | lineage2.2 | None | SRR3675513 | Other | lineage4.8 | None | ERR4815919 | Other | lineage4.8 | None | SRR3675510 | Other | None | ERR4816967 | RR-TB | lineage5 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR1949966 | Sensitive | lineage4 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR4817466 | Other | lineage1.1.1 | gb | ERR4816031 | Other | lineage4.3.3 | gb | ERR4816074 | Other | lineage1.2.2.2 | None | ERR4817342 | Other | lineage4.1.1 | None | ERR4816988 | Other | lineage3 | gb | ERR4816009 | Other | lineage1.1.2 | None | ERR2027232 | Other | lineage4.3.4.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817047 | Other | lineage4.2.2.1 | gb | ERR4816198 | Sensitive | lineage4.1.3 | None | SRR3675557 | Other | lineage4.9 | None | ERR4816293 | Other | lineage4.1.2.1 | None | ERR4816231 | Other | lineage4 | None | ERR4816249 | Other | lineage1.1.2 | gb | ERR4816310 | HR-TB | lineage4.6.1.2 | None | SRR3675565 | Other | lineage3 | None | ERR4816303 | Other | lineage4.1.1.3 | gb | ERR2229760 | Other | lineage4.8 | dk | ERR4816417 | Other | lineage4.9 | None | ERR4816441 | Sensitive | lineage3 | None | ERR4816437 | Other | lineage3 | gb | ERR2446509 | Other | lineage3 | nl | ERR4816322 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4817071 | Sensitive | lineage4.3.3 | gb | ERR4817475 | Other | lineage4.1.1.3 | gb | ERR4816464 | Other | lineage3 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR4816476 | Other | lineage3.1.2.1 | None | ERR4817488 | Other | lineage4.3.4.2.1 | None | ERR4817109 | Other | lineage3 | None | ERR4816510 | Other | lineage4.1.2.1 | None | ERR4817127 | Other | lineage4.1.2.1 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4816562 | Other | lineage4 | None | ERR4817135 | Other | lineage4.1.2.1 | None | ERR4816627 | Other | lineage2.2 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816571 | Other | lineage1.1.2 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4816604 | RR-TB | lineage4.1.2 | None | ERR4816699 | Other | lineage4.6 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4816713 | Other | lineage1.1.2 | gb | SRR5818426 | Other | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR2229791 | RR-TB | lineage4.9 | None | SRR5818386 | Other | None | ERR4817434 | Other | lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817301 | Other | lineage4.9 | None | ERR4816868 | Other | lineage4.4.1.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4817665 | Other | lineage4.8 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR4818663 | Other | lineage3 | None | ERR4817672 | Other | lineage1.1.2 | None | ERR4818654 | Sensitive | lineage4.1.1 | gb | ERR4818696 | Other | lineage4.8 | None | ERR4817730 | Other | lineage4.2.1.1 | gb | ERR4817735 | Other | lineage4.8 | None | ERR4817948 | Other | lineage3 | gb | ERR4817826 | RR-TB | lineage4.5 | None | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR2512991 | Other | lineage1.2.1.2.1 | gb | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR2513059 | Other | lineage4.1.1 | gb | ERR2510746 | Other | lineage2.2.1 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR2510765 | Pre-XDR-TB | lineage4.8 | None | ERR2510768 | Other | lineage4.8 | it | ERR4818752 | Other | lineage3 | None | ERR2510794 | Other | lineage4.3.4.2 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR2510796 | HR-TB | lineage4.3.4.2 | it | ERR4818831 | Other | lineage3 | None | ERR2513152 | Sensitive | lineage1.1.2 | gb | ERR2512433 | Other | lineage3 | gb | ERR4818825 | HR-TB | lineage4.1.2.1 | None | ERR3276144 | Other | lineage3 | nl | ERR4818176 | Other | lineage4.1.2.1 | None | SRR4035998 | Sensitive | lineage4.4.1.1.1 | None | ERR4818219 | Other | lineage4.3.2.1 | gb | ERR4818214 | Sensitive | lineage4.1.2.1 | gb | ERR4818187 | Other | lineage4.6.1.1 | gb | ERR4818192 | Other | lineage4.1.2.1 | gb | ERR4818261 | Other | lineage1.1.2 | None | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818853 | Other | lineage4.1.2 | gb | ERR4818371 | Other | lineage4.3.4.1 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR4818892 | MDR-TB | lineage4.2.2.1 | None | ERR4818918 | Other | lineage1.1.2 | gb | ERR4818874 | Other | lineage4.1.2.1 | gb | ERR4818890 | Other | lineage4.7 | None | ERR4818313 | Other | lineage2.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR2513243 | Other | lineage3 | gb | ERR4818370 | Other | lineage4.1.1 | None | ERR4818574 | Other | lineage6 | None | ERR4818432 | HR-TB | lineage4.5 | gb | ERR4818431 | Other | lineage1.1.2 | gb | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4818509 | RR-TB | La1.2.BCG | gb | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR4819080 | Other | lineage4.1.2.1 | gb | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4818952 | Other | lineage3 | None | SRR5007172 | Sensitive | lineage4.1.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817555 | RR-TB | lineage3 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR2513589 | Other | lineage3.1.3 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4819093 | Other | lineage4.3.3 | None | ERR4817619 | Other | lineage4.1.2.1 | gb | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4820699 | Other | lineage4.1.1 | gb | ERR4819139 | RR-TB | La1.2.BCG | None | SRR5152914 | MDR-TB | lineage2.2.1 | None | ERR2513794 | Other | lineage4.8 | gb | SRR5818458 | Other | None | ERR2513728 | Other | lineage3 | gb | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4819196 | Other | lineage4.1.1 | gb | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | ERR4820264 | Other | lineage1.1.2 | None | ERR2513903 | Other | lineage4.4.1.1 | gb | ERR4820290 | Other | lineage3 | None | ERR2513910 | Other | lineage3 | gb | ERR4819458 | Other | lineage4.1.1.3.1 | gb | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819456 | Other | lineage4.8 | None | SRR5153833 | Other | lineage2.2.1 | None | ERR4820729 | Other | lineage2.2.1 | None | ERR2514179 | Sensitive | lineage3.1.1 | gb | ERR2514173 | Other | lineage4.5 | gb | ERR4820742 | Other | lineage4.3.4.2.1 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR4820369 | Other | lineage2.2.1 | None | ERR4819524 | Other | lineage3 | None | ERR4819567 | Other | lineage2.2.1 | None | ERR4819615 | Other | lineage4.3.4.2.1 | None | ERR2514389 | Other | lineage3 | None | ERR2514394 | Other | lineage4.3.4.2 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR2514550 | MDR-TB | lineage3 | gb | ERR4819723 | Other | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR2514515 | Other | lineage4.2.1 | None | ERR4819724 | Other | lineage4.9 | None | ERR4820478 | Other | lineage3.1.3 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819766 | Other | lineage4.4.1.1 | None | ERR2514576 | Other | lineage4.8 | gb | ERR2514613 | Other | lineage4.8 | gb | ERR4819770 | Other | lineage4.8 | gb | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR4820503 | Other | lineage2.2.1 | None | ERR4820492 | Other | lineage2.2.1 | None | ERR4819804 | Sensitive | lineage3.1.1 | gb | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820889 | Other | lineage3 | gb | ERR1023509 | Other | None | ERR4819910 | Other | lineage4.9 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR4819948 | Other | lineage4.4.1.1 | None | ERR2514834 | Other | lineage4.7 | None | ERR4819980 | Other | lineage4.1.2.1 | None | ERR2514926 | Other | lineage4.6.2.2 | gb | ERR4819950 | RR-TB | lineage4.1.1.3 | gb | ERR4820012 | Other | lineage4.1.2.1 | None | ERR4820028 | Other | lineage4.3.3 | None | ERR2515011 | Other | lineage4.1.2.1 | gb | ERR2515013 | Sensitive | lineage2.2.1 | None | ERR4820030 | Other | lineage4.9 | None | ERR4820841 | Sensitive | lineage4.9 | None | ERR4820057 | Other | lineage4.4.1.1 | gb | ERR4820130 | Other | lineage3 | None | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | ERR4820926 | Other | lineage4.8 | gb | ERR4820690 | Other | lineage4.1.1 | gb | ERR4820193 | Other | lineage3 | None | ERR4820188 | Other | lineage3 | gb | ERR4820907 | Other | lineage4.1.2.1 | gb | ERR4820667 | MDR-TB | lineage1.2.1.2 | gb | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820953 | Other | lineage4.3.3 | None | ERR4821802 | Other | La3 | gb | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6046087 | Other | None | ERR4821054 | Other | lineage3 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR5818445 | Other | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821136 | Other | lineage4.2.1 | gb | ERR4821288 | Other | lineage4.7 | None | ERR4821139 | Other | lineage4.8 | gb | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821167 | Other | lineage4.8 | gb | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821176 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6045544 | Other | lineage2.2.1 | gb | ERR270771 | HR-TB | lineage3 | None | ERR4821198 | Other | lineage3 | gb | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4821310 | Other | lineage5 | None | ERR4821979 | Other | lineage4.1.2.1 | gb | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821410 | Other | lineage2.2.1 | gb | ERR4822021 | Other | lineage4.8 | gb | ERR4822034 | Other | lineage3.1.2.1 | None | ERR4821523 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4821519 | Other | lineage3 | gb | ERR4821402 | Other | lineage4.3.3 | gb | ERR4822110 | Other | lineage3.1.2.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4822169 | Other | lineage4.1.1.3 | gb | ERR4822176 | Other | lineage4.1.1.2 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4822190 | Other | lineage1.1.3.1 | gb | ERR4821572 | Other | lineage2.1 | None | ERR4822222 | Other | lineage3.1.2.2 | None | ERR4821578 | Other | lineage4.1.2.1 | None | ERR4821584 | Other | lineage4.8.2 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821725 | Other | lineage4.8.2 | gb | ERR4821712 | HR-TB | None | ERR4821719 | Other | lineage3 | gb | ERR4821718 | Other | lineage4.2.2.2 | gb | ERR4821731 | Other | lineage3 | gb | ERR4821736 | HR-TB | lineage2.2.1 | gb | ERR4821722 | Other | lineage2.2.1 | None | ERR4821761 | Other | lineage3 | gb | ERR4821746 | Other | lineage4.4.1.1 | gb | SRR6045614 | Other | lineage4.8 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR5818385 | Other | lineage4.9 | None | SRR6045642 | Other | lineage3.1.2.2 | None | SRR5818391 | Other | lineage4.9 | None | SRR5818394 | Other | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818393 | Other | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818396 | Other | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818400 | Other | lineage4.9 | None | SRR5818411 | MDR-TB | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None | SRR5818409 | Other | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | SRR5818414 | Other | lineage4.9 | None | SRR5818410 | Sensitive | lineage4.9 | None | SRR5818423 | MDR-TB | lineage4.9 | None | SRR5818437 | MDR-TB | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR5818440 | Other | lineage4.9 | None | SRR5818452 | Other | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR5818441 | Other | lineage4.9 | None | SRR5818442 | Other | lineage4.9 | None | SRR5818456 | Other | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR6045743 | Other | lineage3 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818466 | Other | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | SRR5818463 | Sensitive | lineage4.9 | None | SRR5818457 | Other | lineage4.9 | None | SRR5818660 | Sensitive | lineage4.1.1.3 | dj | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818684 | Other | lineage4.2.2.2 | None | SRR5818677 | Sensitive | lineage1.1.2 | dj | SRR6045843 | Other | lineage4.2.2.2 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR5818685 | Sensitive | None | SRR6044769 | Other | lineage1.1.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044904 | Other | lineage3 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044946 | Other | lineage4.1.2.1 | gb | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044978 | Sensitive | lineage4.1.1.3.1 | gb | SRR6044983 | Other | lineage3.1.1 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045135 | Other | lineage3 | None | SRR6045056 | Other | lineage2.2.1 | gb | SRR6045986 | Other | lineage3 | None | SRR6046173 | Other | lineage3 | None | SRR6046020 | Other | lineage3 | None | SRR6046177 | Other | lineage3.1.2 | None | SRR6045365 | Other | lineage3 | gb | SRR6045178 | Other | lineage3 | None | SRR6045261 | Other | lineage1.1.2 | gb | SRR6045295 | Other | lineage4.7 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045248 | Other | lineage3.1.1 | None | SRR6045264 | Sensitive | lineage2.2.1 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046217 | Other | lineage3 | gb | ERR4829907 | HR-TB | lineage4.1.2.1 | it | SRR6046343 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | ERR4829207 | Other | lineage2.2.1 | None | ERR4829333 | RR-TB | lineage4 | None | ERR4829289 | Other | lineage4.1.2.1 | None | ERR4829360 | Sensitive | lineage4.7 | None | ERR4829359 | Other | lineage4.7 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046433 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046483 | Other | lineage4.6.3 | None |
---|