Run ID: SRR1049673
Sample name:
Date: 02-04-2023 18:14:38
Number of reads: 1415029
Percentage reads mapped: 22.37
Strain: lineage3
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7570 | p.Ala90Val | missense_variant | 0.16 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
gyrA | 7572 | p.Ser91Pro | missense_variant | 0.36 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
gyrA | 7581 | p.Asp94Asn | missense_variant | 0.39 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.23 | rifampicin |
rpsL | 781822 | p.Lys88Arg | missense_variant | 0.42 | streptomycin |
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.31 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.43 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.36 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 619825 | c.-66G>T | upstream_gene_variant | 0.22 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 0.95 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 0.16 |
rpoB | 761003 | c.1197C>G | synonymous_variant | 0.15 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.2 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.29 |
rpoB | 761037 | c.1231_1233delTTGinsCTC | synonymous_variant | 0.25 |
rpoB | 761051 | c.1245G>T | synonymous_variant | 0.3 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.3 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.28 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.3 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.29 |
rpoB | 761088 | c.1282_1284delAGCinsTCG | synonymous_variant | 0.26 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.25 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.24 |
rpoB | 761111 | c.1305C>T | synonymous_variant | 0.24 |
rpoB | 761126 | c.1320G>C | synonymous_variant | 0.23 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.24 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.24 |
rpoB | 761147 | c.1341C>T | synonymous_variant | 0.24 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.22 |
rpoB | 761156 | c.1350G>T | synonymous_variant | 0.25 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.16 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.14 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.15 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.21 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.26 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.21 |
rpoB | 761255 | c.1449T>C | synonymous_variant | 0.19 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.19 |
rpoB | 761264 | c.1458C>G | synonymous_variant | 0.18 |
rpoB | 761276 | c.1470G>C | synonymous_variant | 0.18 |
rpoB | 761282 | c.1476C>T | synonymous_variant | 0.19 |
rpoB | 761304 | p.Val500Ile | missense_variant | 0.15 |
rpoB | 761961 | p.Pro719Ser | missense_variant | 0.27 |
rpoB | 761973 | p.His723Tyr | missense_variant | 0.36 |
rpoB | 761980 | p.Tyr725Phe | missense_variant | 0.42 |
rpoB | 761987 | c.2181C>T | synonymous_variant | 0.49 |
rpoB | 761999 | c.2193G>C | synonymous_variant | 0.47 |
rpoB | 762002 | c.2196C>G | synonymous_variant | 0.47 |
rpoB | 762003 | p.Asn733Gln | missense_variant | 0.48 |
rpoB | 762015 | p.Glu737Gln | missense_variant | 0.49 |
rpoB | 762020 | p.Glu738Asp | missense_variant | 0.47 |
rpoB | 762026 | c.2220G>C | synonymous_variant | 0.48 |
rpoB | 762030 | p.Thr742Ser | missense_variant | 0.48 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.46 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.4 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.33 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.3 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.22 |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.13 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.37 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.43 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.53 |
rpoB | 762245 | c.2439G>T | synonymous_variant | 0.52 |
rpoB | 762251 | c.2445G>C | synonymous_variant | 0.52 |
rpoB | 762254 | c.2448T>G | synonymous_variant | 0.52 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.53 |
rpoB | 762273 | p.Ala823Ser | missense_variant | 0.52 |
rpoB | 762278 | c.2472C>T | synonymous_variant | 0.42 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.36 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.27 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762452 | c.-918G>C | upstream_gene_variant | 0.13 |
rpoC | 762470 | c.-900G>C | upstream_gene_variant | 0.16 |
rpoB | 762474 | p.Gly890Ser | missense_variant | 0.17 |
rpoB | 762478 | p.Lys891Thr | missense_variant | 0.17 |
rpoC | 762491 | c.-879T>C | upstream_gene_variant | 0.18 |
rpoC | 762509 | c.-861T>C | upstream_gene_variant | 0.15 |
rpoB | 762855 | p.Val1017Ile | missense_variant | 0.24 |
rpoB | 762858 | p.Thr1018Ser | missense_variant | 0.25 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.23 |
rpoC | 762866 | c.-504C>A | upstream_gene_variant | 0.25 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.28 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.27 |
rpoC | 762887 | c.-483G>C | upstream_gene_variant | 0.38 |
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 0.46 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.48 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.49 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.46 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.44 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.51 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.49 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.48 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.45 |
rpoB | 763002 | c.3197dupA | frameshift_variant | 0.39 |
rpoB | 763006 | c.3201delC | frameshift_variant | 0.38 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.42 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.42 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.43 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.37 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.32 |
rpoC | 763058 | c.-312C>G | upstream_gene_variant | 0.25 |
rpoC | 763085 | c.-285C>T | upstream_gene_variant | 0.27 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.38 |
rpoC | 763100 | c.-270G>A | upstream_gene_variant | 0.38 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.39 |
rpoB | 763122 | p.Ile1106Leu | missense_variant | 0.43 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.42 |
rpoB | 763130 | p.Glu1108Asp | missense_variant | 0.39 |
rpoC | 763136 | c.-234C>A | upstream_gene_variant | 0.36 |
rpoC | 763157 | c.-213G>C | upstream_gene_variant | 0.32 |
rpoC | 763160 | c.-210G>C | upstream_gene_variant | 0.3 |
rpoB | 763161 | p.Leu1119Ile | missense_variant | 0.29 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 0.29 |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.29 |
rpoB | 763170 | p.Leu1122Met | missense_variant | 0.29 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.24 |
rpoC | 763483 | c.114G>C | synonymous_variant | 0.34 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.39 |
rpoC | 763504 | c.135C>A | synonymous_variant | 0.58 |
rpoC | 763507 | c.138G>C | synonymous_variant | 0.62 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.64 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.63 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.63 |
rpoC | 763537 | c.168C>T | synonymous_variant | 0.65 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.65 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.65 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.71 |
rpoC | 763585 | c.216C>G | synonymous_variant | 0.72 |
rpoC | 763621 | c.252C>T | synonymous_variant | 0.72 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.68 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.69 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.66 |
rpoC | 763666 | c.297G>T | synonymous_variant | 0.65 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.62 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.57 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.49 |
rpoC | 763709 | c.340C>T | synonymous_variant | 0.48 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.48 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.47 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.47 |
rpoC | 763726 | c.357C>T | synonymous_variant | 0.49 |
rpoC | 763729 | c.360G>C | synonymous_variant | 0.51 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.52 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.5 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.46 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.29 |
rpoC | 763768 | c.399C>A | synonymous_variant | 0.24 |
rpoC | 764455 | c.1086G>T | synonymous_variant | 0.21 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.27 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.41 |
rpoC | 764491 | c.1122G>C | synonymous_variant | 0.54 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.52 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.54 |
rpoC | 764507 | p.Ala380Ser | missense_variant | 0.55 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.62 |
rpoC | 764524 | c.1155C>T | synonymous_variant | 0.59 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.59 |
rpoC | 764533 | c.1164C>T | synonymous_variant | 0.64 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.66 |
rpoC | 764542 | c.1173C>G | synonymous_variant | 0.7 |
rpoC | 764548 | c.1179G>A | synonymous_variant | 0.73 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.73 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.68 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.67 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.67 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.68 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.68 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.61 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.58 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.56 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.46 |
rpoC | 764679 | p.Lys437Ser | missense_variant | 0.36 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.34 |
rpoC | 764690 | p.Cys441Ala | missense_variant | 0.29 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.42 |
rpoC | 764705 | p.Leu446Thr | missense_variant | 0.43 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.6 |
rpoC | 764737 | c.1368G>C | synonymous_variant | 0.61 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.61 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.59 |
rpoC | 764755 | c.1386C>T | synonymous_variant | 0.59 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.6 |
rpoC | 764780 | c.1411_1413delAGCinsTCG | synonymous_variant | 0.62 |
rpoC | 764797 | c.1428G>C | synonymous_variant | 0.65 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.62 |
rpoC | 764808 | p.Arg480His | missense_variant | 0.59 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.55 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.54 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.53 |
rpoC | 764843 | p.Ala492Thr | missense_variant | 0.44 |
rpoC | 764848 | c.1479G>A | synonymous_variant | 0.45 |
rpoC | 764858 | c.1489_1491delTTGinsCTC | synonymous_variant | 0.37 |
rpoC | 764863 | c.1494G>C | synonymous_variant | 0.39 |
rpoC | 764875 | c.1506C>G | synonymous_variant | 0.31 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.16 |
rpoC | 764948 | c.1579_1581delTTGinsCTC | synonymous_variant | 0.16 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.17 |
rpoC | 764957 | p.Glu530Ser | missense_variant | 0.17 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.22 |
rpoC | 764998 | c.1629G>C | synonymous_variant | 0.25 |
rpoC | 765007 | c.1638T>G | synonymous_variant | 0.3 |
rpoC | 765008 | c.1639T>C | synonymous_variant | 0.29 |
rpoC | 765014 | p.Ala549Pro | missense_variant | 0.29 |
rpoC | 765019 | c.1650A>G | synonymous_variant | 0.32 |
rpoC | 765034 | c.1665T>C | synonymous_variant | 0.12 |
rpoC | 765923 | p.Asn852Ala | missense_variant | 0.19 |
rpoC | 765926 | p.Thr853Ser | missense_variant | 0.19 |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.28 |
rpoC | 765940 | c.2571A>C | synonymous_variant | 0.29 |
rpoC | 765947 | c.2578_2580delTTGinsCTC | synonymous_variant | 0.25 |
rpoC | 765958 | c.2589C>G | synonymous_variant | 0.29 |
rpoC | 765962 | c.2593T>C | synonymous_variant | 0.29 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.29 |
rpoC | 765973 | c.2604C>T | synonymous_variant | 0.29 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.24 |
rpoC | 765997 | c.2628T>C | synonymous_variant | 0.21 |
rpoC | 766000 | c.2631G>C | synonymous_variant | 0.23 |
rpoC | 766003 | c.2634G>C | synonymous_variant | 0.23 |
rpoC | 766012 | c.2643C>G | synonymous_variant | 0.19 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781748 | c.189C>G | synonymous_variant | 0.14 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.18 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.32 |
rpsL | 781766 | c.207C>T | synonymous_variant | 0.38 |
rpsL | 781772 | c.213C>A | synonymous_variant | 0.41 |
rpsL | 781796 | p.Met79Ile | missense_variant | 0.4 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.41 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.4 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.41 |
rpsL | 781820 | c.261G>C | synonymous_variant | 0.42 |
rpsL | 781829 | c.270G>T | synonymous_variant | 0.43 |
rpsL | 781832 | c.273T>G | synonymous_variant | 0.43 |
rpsL | 781845 | p.Lys96Arg | missense_variant | 0.35 |
rpsL | 781851 | p.Ile98Val | missense_variant | 0.38 |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.23 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.17 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.17 |
fbiC | 1303386 | c.460_461dupCG | frameshift_variant | 0.13 |
fbiC | 1304946 | c.2022_2024dupCGA | disruptive_inframe_insertion | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472120 | n.275G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472223 | n.378C>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472228 | n.383G>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472245 | n.400C>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472279 | n.434T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472380 | n.535G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472506 | n.661A>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472572 | n.727T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472591 | n.746G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473047 | n.1202C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473122 | n.1278A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1473157 | n.1312C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473298 | n.1453A>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1473832 | n.175C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1473833 | n.176_177insT | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473884 | n.227C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473887 | n.230T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473888 | n.231T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473889 | n.232G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473898 | n.241C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474155 | n.498G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474171 | n.514C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474202 | n.545T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474263 | n.606G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474287 | n.630T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474290 | n.633T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474806 | n.1149A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474822 | n.1165G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474905 | n.1248T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475672 | n.2015C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475696 | n.2039T>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475697 | n.2040C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475703 | n.2046A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475963 | n.2306G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475989 | n.2332T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475990 | n.2333G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476130 | n.2473G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476519 | n.2862C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476534 | n.2877A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476628 | n.2971T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.16 |
inhA | 1673816 | c.-386G>A | upstream_gene_variant | 1.0 |
rpsA | 1833668 | p.Ile43Val | missense_variant | 0.41 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 0.46 |
rpsA | 1833679 | c.138G>C | synonymous_variant | 0.46 |
rpsA | 1833682 | c.141C>T | synonymous_variant | 0.45 |
rpsA | 1833685 | c.144G>C | synonymous_variant | 0.45 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.41 |
rpsA | 1833698 | p.Leu53Val | missense_variant | 0.36 |
rpsA | 1833709 | c.168C>A | synonymous_variant | 0.36 |
rpsA | 1833718 | c.177C>G | synonymous_variant | 0.29 |
rpsA | 1834039 | c.498C>G | synonymous_variant | 0.26 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.26 |
rpsA | 1834043 | p.Glu168Gln | missense_variant | 0.26 |
rpsA | 1834046 | p.Ile169Val | missense_variant | 0.29 |
rpsA | 1834054 | c.513C>G | synonymous_variant | 0.26 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.24 |
rpsA | 1834090 | c.549G>C | synonymous_variant | 0.26 |
rpsA | 1834093 | c.552G>C | synonymous_variant | 0.24 |
rpsA | 1834096 | c.555G>C | synonymous_variant | 0.23 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.23 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.23 |
rpsA | 1834114 | c.573G>C | synonymous_variant | 0.24 |
rpsA | 1834189 | c.648G>C | synonymous_variant | 0.21 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.27 |
rpsA | 1834213 | c.672G>C | synonymous_variant | 0.27 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.26 |
rpsA | 1834228 | c.687C>T | synonymous_variant | 0.23 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.24 |
rpsA | 1834240 | c.699T>A | synonymous_variant | 0.24 |
rpsA | 1834243 | c.702G>C | synonymous_variant | 0.24 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.26 |
rpsA | 1834255 | c.714C>G | synonymous_variant | 0.23 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.21 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.21 |
rpsA | 1834279 | c.738C>T | synonymous_variant | 0.2 |
rpsA | 1834327 | c.786G>T | synonymous_variant | 0.41 |
rpsA | 1834348 | c.807T>G | synonymous_variant | 0.41 |
rpsA | 1834354 | c.813G>C | synonymous_variant | 0.41 |
rpsA | 1834357 | c.816T>C | synonymous_variant | 0.4 |
rpsA | 1834361 | c.820_822delTTGinsCTC | synonymous_variant | 0.41 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.49 |
rpsA | 1834378 | c.837T>G | synonymous_variant | 0.64 |
rpsA | 1834387 | c.846C>T | synonymous_variant | 0.66 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.68 |
rpsA | 1834408 | c.867C>G | synonymous_variant | 0.67 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.65 |
rpsA | 1834416 | p.Ala292Val | missense_variant | 0.66 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.71 |
rpsA | 1834451 | c.910_912delTTGinsCTC | synonymous_variant | 0.74 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.7 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 0.66 |
rpsA | 1834486 | p.Glu315Asp | missense_variant | 0.58 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.57 |
rpsA | 1834501 | c.960G>C | synonymous_variant | 0.43 |
rpsA | 1834504 | c.963G>C | synonymous_variant | 0.42 |
rpsA | 1834519 | c.978G>C | synonymous_variant | 0.32 |
rpsA | 1834524 | p.Glu328Val | missense_variant | 0.28 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.24 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.95 |
katG | 2155957 | p.Pro52Gln | missense_variant | 0.12 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.17 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
folC | 2747671 | c.-73C>A | upstream_gene_variant | 0.11 |
pepQ | 2859477 | c.942T>C | synonymous_variant | 0.2 |
pepQ | 2859870 | p.His183Gln | missense_variant | 0.18 |
thyX | 3067987 | c.-42C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449848 | p.Asp449Asn | missense_variant | 0.12 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640913 | p.Pro124His | missense_variant | 0.15 |
rpoA | 3877803 | c.705G>C | synonymous_variant | 0.2 |
rpoA | 3877824 | c.684G>A | synonymous_variant | 0.21 |
rpoA | 3877836 | c.672A>G | synonymous_variant | 0.21 |
rpoA | 3877839 | c.669G>T | synonymous_variant | 0.21 |
rpoA | 3877842 | c.666A>C | synonymous_variant | 0.21 |
rpoA | 3877845 | c.663G>C | synonymous_variant | 0.21 |
rpoA | 3877848 | c.660C>A | synonymous_variant | 0.22 |
rpoA | 3877856 | c.652T>C | synonymous_variant | 0.21 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.23 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.23 |
rpoA | 3877878 | c.630G>T | synonymous_variant | 0.21 |
rpoA | 3877884 | p.Leu208Ile | missense_variant | 0.18 |
rpoA | 3877887 | c.621G>C | synonymous_variant | 0.16 |
clpC1 | 4039714 | p.Tyr331His | missense_variant | 0.28 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.33 |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.34 |
clpC1 | 4039736 | c.969C>G | synonymous_variant | 0.34 |
clpC1 | 4039739 | c.966C>G | synonymous_variant | 0.34 |
clpC1 | 4039742 | c.963C>T | synonymous_variant | 0.35 |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.39 |
clpC1 | 4039754 | c.951G>C | synonymous_variant | 0.41 |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.41 |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.42 |
clpC1 | 4039773 | p.Lys311Met | missense_variant | 0.42 |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.39 |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.39 |
clpC1 | 4039790 | c.915C>A | synonymous_variant | 0.32 |
clpC1 | 4039802 | c.903G>C | synonymous_variant | 0.23 |
clpC1 | 4039808 | c.897G>A | synonymous_variant | 0.17 |
clpC1 | 4039875 | p.Asn277Arg | missense_variant | 0.12 |
clpC1 | 4039955 | c.750G>C | synonymous_variant | 0.17 |
clpC1 | 4039976 | p.Lys243Thr | missense_variant | 0.4 |
clpC1 | 4039982 | p.Thr241Ile | missense_variant | 0.4 |
clpC1 | 4039991 | c.714G>T | synonymous_variant | 0.52 |
clpC1 | 4040002 | p.His235Asn | missense_variant | 0.54 |
clpC1 | 4040003 | c.702G>C | synonymous_variant | 0.54 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.57 |
clpC1 | 4040021 | c.684A>T | synonymous_variant | 0.57 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.56 |
clpC1 | 4040030 | c.675C>G | synonymous_variant | 0.55 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.57 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.53 |
clpC1 | 4040066 | c.639G>T | synonymous_variant | 0.52 |
clpC1 | 4040081 | c.624C>G | synonymous_variant | 0.43 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 0.31 |
clpC1 | 4040090 | c.615T>C | synonymous_variant | 0.21 |
clpC1 | 4040096 | p.Val203Ile | missense_variant | 0.19 |
embC | 4242075 | p.Arg738Gln | missense_variant | 0.94 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246851 | c.342_344dupGTT | disruptive_inframe_insertion | 0.17 |
embB | 4247358 | p.Val282Ala | missense_variant | 0.74 |
embB | 4249064 | c.2554_2555dupGC | frameshift_variant | 0.12 |
aftB | 4267713 | c.1122_1123dupGC | frameshift_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |