Rv0668 - c.2634G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
37 Sensitive
4 RR-TB
29 HR-TB
16 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9 | 10 |
| La2;lineage4.9 | 1 |
| lineage4.9 | 54 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1 | 2 |
| La1.7.1 | 1 |
| lineage1.1.3.2 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage5.1.4 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.8 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3 | 3 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.5 | 2 |
| lineage4.3.4.1 | 3 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.8.1 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.4 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7 | 1 |
| lineage1;lineage4.9 | 2 |
| La1.7.1;lineage4.9 | 1 |
| La1.8.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 114 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR28868888 | Other | lineage1.1.3.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR752229 | Other | lineage4.5 | None | ERR11465801 | Other | lineage4.3.4.1 | None | ERR400326 | Other | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR29097023 | Sensitive | lineage4.9 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR29097004 | Other | lineage3 | None | SRR29096276 | Sensitive | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR13285191 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR29096166 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None |
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