Rv1630 - c.846C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
67 Sensitive
25 RR-TB
48 HR-TB
23 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 8 |
| lineage2.2.1 | 18 |
| lineage4.3.4.2 | 2 |
| lineage4.2.1 | 3 |
| lineage4.9 | 98 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 7 |
| lineage3 | 11 |
| La1.2.BCG;lineage4.9 | 1 |
| La1.8.1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.8.1 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage1.1.1.1 | 2 |
| lineage4.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage6 | 1 |
| La1.6 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.2 | 1 |
| La1.2.BCG | 3 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| 2 | |
| lineage1.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage1.1.2 | 3 |
| lineage4.4.1.2 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.4.1.1 | 2 |
| lineage4.3.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.2.2 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.3.3 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3;lineage4 | 1 |
| M.canetti;lineage4.9 | 4 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La3;lineage4 | 1 |
| La2;lineage2.2 | 1 |
| La2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 231 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283011 | Other | La3;lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR926163 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR5311077 | Other | La1.8.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140716 | Other | lineage3 | None | ERR176651 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1915479 | Other | La1.2.BCG | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675552 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR22251268 | Sensitive | lineage1.1.2 | None | ERR4820266 | Sensitive | lineage3 | None | ERR867575 | Other | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4816476 | Other | lineage3.1.2.1 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR473332 | Other | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR867573 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR4815954 | Sensitive | lineage1.1.1.1 | gb | ERR4769530 | RR-TB | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR7070223 | HR-TB | lineage3 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR2512606 | HR-TB | lineage3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
